# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 2.33e-14 2oqrA 230 2.54e-14 1w25A 459 2.67e-14 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3c3mA 138 3.02e-14 3dgfC 122 3.58e-14 1ys7A 233 3.94e-14 a.4.6.1,c.23.1.1 123961,123962 3gl9A 122 4.18e-14 2zwmA 130 5.64e-14 3h1gA 129 6.00e-14 3h1fA 129 6.24e-14 3cg4A 142 6.68e-14 3gwgA 129 7.89e-14 3cfyA 137 8.94e-14 1s8nA 205 9.97e-14 c.23.1.1 105374 2jbaA 127 1.01e-13 1kgsA 225 1.04e-13 a.4.6.1,c.23.1.1 68596,68597 3lteA 132 1.17e-13 3lufA 259 1.32e-13 2pl1A 121 1.36e-13 c.23.1.1 149610 2zayA 147 1.43e-13 2qzjA 136 1.57e-13 3crnA 132 1.68e-13 1yioA 208 1.70e-13 a.4.6.2,c.23.1.1 123326,123327 1u8tA 129 1.75e-13 c.23.1.1 113192 1l5zA 155 1.75e-13 c.23.1.1 77722 1ab6A 125 1.78e-13 c.23.1.1 31054 1mvoA 136 1.80e-13 c.23.1.1 79513 3c97A 140 1.83e-13 3f6pA 120 1.96e-13 1zesA 125 2.19e-13 c.23.1.1 124994 1zh2A 121 2.19e-13 c.23.1.1 125069 1qkkA 155 2.23e-13 c.23.1.1 31104 3khtA 144 2.38e-13 1ab5A 125 2.63e-13 c.23.1.1 31056 3cnbA 143 2.65e-13 1mb3A 124 2.70e-13 c.23.1.1 78907 3grcA 140 2.85e-13 3a10A 116 2.87e-13 1e6mA 128 2.92e-13 c.23.1.1 31039 2qr3A 140 3.42e-13 1b00A 127 3.88e-13 c.23.1.1 31122 1dbwA 126 4.12e-13 c.23.1.1 31095 2a9oA 120 4.16e-13 c.23.1.1 126444 2gkgA 127 4.27e-13 1zgzA 122 4.31e-13 c.23.1.1 125065 1jbeA 128 4.33e-13 c.23.1.1 62845 2r25B 133 4.79e-13 c.23.1.1 151530 1xhfA 123 4.84e-13 c.23.1.1 122003 3h5iA 140 5.09e-13 3kcnA 151 5.34e-13 3i5aA 334 5.85e-13 3hv2A 153 5.98e-13 3hdgA 137 6.05e-13 1p2fA 220 6.18e-13 a.4.6.1,c.23.1.1 87720,87721 3chy 128 6.66e-13 2qxyA 142 6.81e-13 1srrA 124 7.38e-13 c.23.1.1 31110 1dcfA 136 7.42e-13 c.23.1.2 31124 3cg0A 140 7.54e-13 3eulA 152 7.82e-13 2jk1A 139 8.11e-13 1a04A 215 8.26e-13 a.4.6.2,c.23.1.1 16234,31089 1i3cA 149 8.81e-13 c.23.1.1 71112 3hebA 152 9.09e-13 1tmyA 120 9.74e-13 c.23.1.1 31083 3b2nA 133 1.05e-12 3hdvA 136 1.09e-12 3f6cA 134 1.09e-12 1k68A 140 1.11e-12 c.23.1.1 90943 2plnA 137 1.14e-12 2vuhB 139 1.17e-12 3luaA 140 1.23e-12 3hzhA 157 1.29e-12 1k66A 149 1.33e-12 c.23.1.1 90941 2rjnA 154 1.45e-12 3jteA 143 1.47e-12 1oxkB 134 1.51e-12 c.23.1.1 93691 3cz5A 153 1.68e-12 3i42A 127 2.31e-12 2qvgA 143 2.36e-12 3breA 358 2.50e-12 3ktoA 136 2.80e-12 1u0sY 118 2.81e-12 c.23.1.1 107566 1dc7A 124 3.82e-12 c.23.1.1 31093 1dz3A 130 4.08e-12 c.23.1.1 31105 2qv0A 143 8.70e-12 3eqzA 135 1.49e-11 1a2oA 349 1.64e-11 c.23.1.1,c.40.1.1 31120,32479 2b4aA 138 1.66e-11 c.23.1.1 127817 3cu5A 141 1.80e-11 2rdmA 132 2.13e-11 3ilhA 146 5.70e-11 3eodA 130 8.28e-11 3kyjB 145 1.46e-10 2qsjA 154 2.01e-09 3kloA 225 3.19e-09 1qo0D 196 1.86e-08 c.23.1.3 31125 3cloA 258 1.43e-06 2ch4A 320 7.20e-06 b.40.7.1,d.122.1.3 130447,130448 1mu5A 471 0.000626 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 3gbgA 276 0.1360 1b3qA 379 0.1581 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 1cs0B 382 0.2879 c.8.3.1,c.23.16.1 30740,31417 1c3oB 382 0.3831 c.8.3.1,c.23.16.1 30744,31421 1xm3A 264 0.6662 c.1.31.1 115461 1gpmA 525 0.6991 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1bqg 451 1.024 3memA 457 1.068 1ec7A 446 1.320 c.1.11.2,d.54.1.1 29218,38862 3kyiB 145 1.440 1h5yA 253 1.606 c.1.2.1 65638 1wv2A 265 1.638 c.1.31.1 114910 1bqgA 451 1.690 c.1.11.2,d.54.1.1 29217,38861 2tpsA 227 2.167 c.1.3.1 28591 1jdfA 447 2.254 c.1.11.2,d.54.1.1 62897,62898 2a0nA 265 2.336 c.1.2.1 125961 1thfD 253 2.905 c.1.2.1 28535 1a9xB 379 2.935 c.8.3.1,c.23.16.1 30732,31409 1a53 247 3.049 1vh7A 265 3.094 c.1.2.1 100646 1c30B 382 3.764 c.8.3.1,c.23.16.1 30736,31413 3iipA 256 3.929 1sjdA 368 4.122 c.1.11.2,d.54.1.1 105632,105633 2gjlA 328 4.277 2z6iA 332 4.326 3bw2A 369 5.301 3iioA 262 5.420 3mznA 450 5.480 1m1nB 522 5.568 c.92.2.3 78418 1wl8A 189 5.667 c.23.16.1 120997 2htmA 268 5.707 3ekgA 404 5.944 1r0mA 375 5.958 c.1.11.2,d.54.1.1 104747,104748 3iivA 263 6.073 1y0eA 223 6.358 c.1.2.5 116297 1wueA 386 7.056 c.1.11.2,d.54.1.1 114892,114893 1qh8B 519 7.208 c.92.2.3 35634 1jjeA 222 7.466 d.157.1.1 63117 1reqA 727 8.155 c.1.19.1,c.23.6.1 29620,31247 2oo6A 409 8.300 1qdlB 195 8.302 c.23.16.1 31437 3fz9A 112 8.497 2tysA 268 9.118 c.1.2.4 28572 2og9A 393 9.160 1ep3A 311 9.337 c.1.4.1 28597 2yzrA 330 9.380 2qddA 378 10.08 3cniA 156 10.18 2hxtA 441 10.18 1xi3A 215 10.55 c.1.3.1 109601 1tkkA 366 10.79 c.1.11.2,d.54.1.1 107089,107090 2p8bA 369 11.30 1kbjA 412 11.51 c.1.4.1 72280 2qdeA 397 11.78 5reqA 727 11.88 c.1.19.1,c.23.6.1 29632,31259 1g8aA 227 12.18 c.66.1.3 90506 2vwsA 267 12.78 1ccwA 137 13.14 c.23.6.1 31238 3igsA 232 13.50 1jr1A 514 13.60 d.37.1.1,c.1.5.1 144358,63241 3aekA 437 14.02 2pp3A 398 14.55 1dl5A 317 14.59 c.66.1.7,d.197.1.1 64720,64721 3ce9A 354 14.71 1yeyA 444 14.90 c.1.11.2,d.54.1.1 116664,116665 3h7vA 330 15.28 2pgwA 384 15.35 1i1qB 192 15.60 c.23.16.1 61544 3go2A 409 16.02 1sqgA 429 16.12 a.79.1.3,c.66.1.38 105912,105913 2zc8A 369 16.31 2ox4A 403 16.32 2oz3A 404 16.65 2qr6A 393 17.56 1j97A 211 17.84 c.108.1.4 62753 1mdlA 359 18.13 c.1.11.2,d.54.1.1 29247,38891 1he2A 206 18.34 c.2.1.2 60966 2oz8A 389 18.77 2ovlA 371 18.86 1i7qB 193 18.91 c.23.16.1 61902 3fv9A 386 18.98 1yxyA 234 19.03 c.1.2.5 124203 2gdqA 382 19.29 c.1.11.2,d.54.1.1 135020,135021 1tb3A 352 19.37 c.1.4.1 119205 1nt2A 210 19.89 c.66.1.3 86149 2yweA 600 20.50 1o54A 277 20.62 c.66.1.13 92482 2yxeA 215 21.47 3mkcA 394 22.18 3iieA 401 22.58 1twdA 256 22.81 c.1.30.1 107397 3lhdA 253 23.21 2yxbA 161 23.48 1jg1A 235 23.64 c.66.1.7 66661 3hl0A 353 23.65 1mucA 373 24.41 c.1.11.2,d.54.1.1 29236,38880 3mb5A 255 24.76 3c3pA 210 25.59 1o1yA 239 25.72 c.23.16.1 86554 1qopA 268 25.95 c.1.2.4 28570 3i6eA 385 26.43 1y80A 210 26.59 3ct2A 382 26.61 2hneA 436 26.98 2pceA 386 27.90 2vycA 755 29.02 3dg6A 367 29.41 1lst 239 30.02 2gl5A 410 30.91 c.1.11.2,d.54.1.1 135336,135337 3hojA 248 30.95 1g8sA 230 31.31 c.66.1.3 90507 2oqhA 385 31.33 1liiA 363 31.63 c.72.1.1 73921 3mqtA 394 31.75 1hyuA 521 32.96 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1mioB 458 33.02 c.92.2.3 35602 3k94A 223 33.38 1qguB 519 34.11 c.92.2.3 35626 2ps2A 371 34.36 3kp1A 763 36.42 3ik4A 365 36.66 3h12A 397 37.08 3es7A 391 37.12 1rd5A 262 37.24 c.1.2.4 111772 3ic5A 118 37.49 2oztA 332 37.68 1o5oA 221 38.07 c.61.1.1 92509 2jacA 110 38.17 3fbsA 297 38.39 2o56A 407 38.85 1jvsA 400 39.74 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 3cbgA 232 40.33 2v5jA 287 40.91 1pii 452 41.25 1geqA 248 41.65 c.1.2.4 28589 3i4kA 383 42.53 2qgyA 391 42.63 2nyuA 196 42.82 2nliA 368 43.08 2rexB 197 43.23 1q0qA 406 43.54 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1hslA 238 43.81 c.94.1.1 35804 2pozA 392 45.74 1goxA 369 45.87 c.1.4.1 28607 2pmqA 377 46.58 3dfhA 394 47.21 1efaA 333 48.66 a.35.1.5,c.93.1.1 17106,35691 2zadA 345 49.11 2qjjA 402 49.22 2rduA 387 50.80 3fcpA 381 51.26 3h2bA 203 51.30 1ta9A 450 51.54 2pwyA 258 51.98 3dgbA 382 52.42 1rfeA 162 53.13 b.45.1.1 111796 1izcA 339 53.33 c.1.12.5 83838 1kfcA 268 54.21 c.1.2.4 77371 3iv6A 261 54.63 2rdxA 379 55.16 2du2A 374 56.18 3fyyA 391 58.35 1r0kA 388 59.07 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1tqxA 227 59.13 c.1.2.2 112614 2i2xB 258 59.36 1nrwA 288 59.53 c.108.1.10 86128 1lstA 239 59.90 c.94.1.1 35755 1yadA 221 60.23 3fxgA 455 60.69 2oqyA 391 63.42 3lm8A 222 63.63 2xdqA 460 64.62 1qpoA 284 64.64 c.1.17.1,d.41.2.1 29561,38597 2yvlA 248 65.41 2voyI 128 65.56 2hzgA 401 65.74 2dztA 248 67.75 2nqlA 388 68.35 1nu5A 370 69.94 c.1.11.2,d.54.1.1 92183,92184 1k7yA 577 70.74 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 1igs 248 71.47 1wmdA 434 74.18 b.18.1.20,c.41.1.1 109408,109409 2wa7A 245 75.09 2pqmA 343 75.22 3gy1A 408 75.37 3gd6A 391 75.47 1uirA 314 75.88 c.66.1.17 99429 1x1oA 286 77.41 3c6kA 381 77.52 1s2oA 244 79.20 c.108.1.10 118846 1zx0A 236 80.00 c.66.1.16 125757 1o6cA 388 81.14 c.87.1.3 92565 1jubA 311 81.44 c.1.4.1 90908 2dkjA 407 81.52 1cb6A 691 81.59 c.94.1.2,c.94.1.2 35840,35841 3mwcA 400 82.71 1vr5A 547 83.66 c.94.1.1 120437 1b0lA 691 84.63 c.94.1.2,c.94.1.2 35847,35848 1l2tA 235 85.60 c.37.1.12 73514 3gjyA 317 85.88 1ixkA 315 86.57 c.66.1.38 90716 3d5jA 112 86.65 1vhcA 224 87.66 c.1.10.1 100661 2i6xA 211 88.21 2gffA 106 88.60 1o4uA 285 89.10 c.1.17.1,d.41.2.1 86624,86625 3l0gA 300 89.31 3kjxA 344 89.46 1xrsB 262 89.54 c.23.6.1,d.230.4.1 115884,115885 1bmtA 246 89.89 a.46.1.1,c.23.6.1 17757,31235