# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 6.88e-14 2oqrA 230 6.96e-14 1w25A 459 7.20e-14 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3c3mA 138 1.14e-13 3dgfC 122 1.18e-13 3gl9A 122 1.20e-13 1ys7A 233 1.53e-13 a.4.6.1,c.23.1.1 123961,123962 2zwmA 130 1.76e-13 3h1gA 129 1.87e-13 3h1fA 129 1.92e-13 3cg4A 142 2.41e-13 3gwgA 129 2.44e-13 3cfyA 137 2.77e-13 1s8nA 205 2.90e-13 c.23.1.1 105374 2jbaA 127 2.91e-13 1kgsA 225 3.09e-13 a.4.6.1,c.23.1.1 68596,68597 3lteA 132 3.49e-13 2zayA 147 4.02e-13 1l5zA 155 4.16e-13 c.23.1.1 77722 1u8tA 129 4.29e-13 c.23.1.1 113192 3crnA 132 4.55e-13 3lufA 259 4.55e-13 2pl1A 121 4.60e-13 c.23.1.1 149610 2qzjA 136 4.64e-13 1qkkA 155 4.83e-13 c.23.1.1 31104 1ab6A 125 5.13e-13 c.23.1.1 31054 1yioA 208 5.28e-13 a.4.6.2,c.23.1.1 123326,123327 3c97A 140 5.50e-13 3f6pA 120 5.61e-13 1zh2A 121 5.79e-13 c.23.1.1 125069 3khtA 144 6.01e-13 1zesA 125 6.26e-13 c.23.1.1 124994 1ab5A 125 6.86e-13 c.23.1.1 31056 1mvoA 136 6.88e-13 c.23.1.1 79513 3a10A 116 7.29e-13 1mb3A 124 7.54e-13 c.23.1.1 78907 3cnbA 143 8.30e-13 1e6mA 128 8.57e-13 c.23.1.1 31039 3grcA 140 9.98e-13 1jbeA 128 1.04e-12 c.23.1.1 62845 1dbwA 126 1.11e-12 c.23.1.1 31095 2a9oA 120 1.16e-12 c.23.1.1 126444 1b00A 127 1.19e-12 c.23.1.1 31122 2qr3A 140 1.26e-12 2gkgA 127 1.32e-12 2r25B 133 1.33e-12 c.23.1.1 151530 1zgzA 122 1.36e-12 c.23.1.1 125065 1xhfA 123 1.36e-12 c.23.1.1 122003 3i5aA 334 1.41e-12 3h5iA 140 1.46e-12 3cg0A 140 1.50e-12 3kcnA 151 1.52e-12 3hdgA 137 1.58e-12 3hv2A 153 1.61e-12 1p2fA 220 1.70e-12 a.4.6.1,c.23.1.1 87720,87721 3chy 128 1.70e-12 2qxyA 142 1.94e-12 1dcfA 136 2.09e-12 c.23.1.2 31124 1a04A 215 2.12e-12 a.4.6.2,c.23.1.1 16234,31089 1i3cA 149 2.22e-12 c.23.1.1 71112 1srrA 124 2.26e-12 c.23.1.1 31110 3hebA 152 2.30e-12 1tmyA 120 2.45e-12 c.23.1.1 31083 2jk1A 139 2.52e-12 3eulA 152 2.65e-12 3hdvA 136 2.80e-12 2vuhB 139 2.91e-12 3f6cA 134 2.94e-12 2plnA 137 2.97e-12 1k68A 140 3.03e-12 c.23.1.1 90943 3b2nA 133 3.19e-12 3luaA 140 3.53e-12 3hzhA 157 3.63e-12 1oxkB 134 3.91e-12 c.23.1.1 93691 2rjnA 154 3.94e-12 3cz5A 153 4.19e-12 3jteA 143 4.22e-12 1k66A 149 4.24e-12 c.23.1.1 90941 2qvgA 143 5.05e-12 3i42A 127 5.28e-12 3breA 358 6.17e-12 1u0sY 118 7.56e-12 c.23.1.1 107566 1dc7A 124 7.87e-12 c.23.1.1 31093 3ktoA 136 8.47e-12 1dz3A 130 1.11e-11 c.23.1.1 31105 2qv0A 143 2.54e-11 1a2oA 349 2.87e-11 c.23.1.1,c.40.1.1 31120,32479 3eqzA 135 4.09e-11 3cu5A 141 4.75e-11 2b4aA 138 5.00e-11 c.23.1.1 127817 2rdmA 132 5.41e-11 3ilhA 146 1.39e-10 3eodA 130 1.88e-10 3kyjB 145 2.78e-10 2qsjA 154 3.79e-09 3kloA 225 5.66e-09 1qo0D 196 3.09e-08 c.23.1.3 31125 3cloA 258 1.85e-06 2ch4A 320 7.74e-06 b.40.7.1,d.122.1.3 130447,130448 1mu5A 471 0.000626 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 3gbgA 276 0.07732 1b3qA 379 0.1098 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 1cs0B 382 0.3621 c.8.3.1,c.23.16.1 30740,31417 3memA 457 0.3629 1c3oB 382 0.4700 c.8.3.1,c.23.16.1 30744,31421 1xm3A 264 0.6981 c.1.31.1 115461 1gpmA 525 0.8967 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1bqg 451 1.159 1bqgA 451 1.672 c.1.11.2,d.54.1.1 29217,38861 1h5yA 253 1.686 c.1.2.1 65638 3kyiB 145 1.819 1ec7A 446 1.976 c.1.11.2,d.54.1.1 29218,38862 1wv2A 265 2.079 c.1.31.1 114910 2a0nA 265 2.805 c.1.2.1 125961 2tpsA 227 2.815 c.1.3.1 28591 1vh7A 265 2.880 c.1.2.1 100646 1jdfA 447 2.956 c.1.11.2,d.54.1.1 62897,62898 1a9xB 379 3.063 c.8.3.1,c.23.16.1 30732,31409 1thfD 253 3.094 c.1.2.1 28535 3iipA 256 3.870 1c30B 382 4.156 c.8.3.1,c.23.16.1 30736,31413 2gjlA 328 4.349 2z6iA 332 4.432 1a53 247 4.526 1y0eA 223 4.784 c.1.2.5 116297 1sjdA 368 4.854 c.1.11.2,d.54.1.1 105632,105633 3iioA 262 5.412 2htmA 268 6.025 3mznA 450 6.250 3iivA 263 6.603 3ekgA 404 7.506 1wueA 386 7.619 c.1.11.2,d.54.1.1 114892,114893 1r0mA 375 7.899 c.1.11.2,d.54.1.1 104747,104748 1m1nB 522 8.056 c.92.2.3 78418 3bw2A 369 8.332 1wl8A 189 8.980 c.23.16.1 120997 2oo6A 409 9.717 1jjeA 222 9.921 d.157.1.1 63117 1qdlB 195 9.97 c.23.16.1 31437 3fz9A 112 9.98 2og9A 393 10.34 2yzrA 330 10.36 3igsA 232 10.48 2hxtA 441 10.72 3cniA 156 10.77 1ep3A 311 11.04 c.1.4.1 28597 1xi3A 215 11.80 c.1.3.1 109601 1qh8B 519 11.93 c.92.2.3 35634 2tysA 268 12.83 c.1.2.4 28572 1g8aA 227 13.01 c.66.1.3 90506 2pp3A 398 13.33 1tkkA 366 13.49 c.1.11.2,d.54.1.1 107089,107090 2p8bA 369 13.84 1kbjA 412 14.23 c.1.4.1 72280 2qddA 378 14.60 3aekA 437 14.62 2qdeA 397 14.68 3ce9A 354 14.91 2vwsA 267 15.70 1reqA 727 15.73 c.1.19.1,c.23.6.1 29620,31247 1dl5A 317 16.12 c.66.1.7,d.197.1.1 64720,64721 2ox4A 403 16.64 2oz3A 404 16.80 2pgwA 384 17.49 1yeyA 444 17.59 c.1.11.2,d.54.1.1 116664,116665 2ovlA 371 17.60 3go2A 409 18.13 1mdlA 359 18.19 c.1.11.2,d.54.1.1 29247,38891 1yxyA 234 18.51 c.1.2.5 124203 2zc8A 369 18.60 1ccwA 137 18.61 c.23.6.1 31238 1j97A 211 19.03 c.108.1.4 62753 1sqgA 429 19.04 a.79.1.3,c.66.1.38 105912,105913 2yweA 600 19.13 2yxeA 215 19.69 5reqA 727 19.81 c.1.19.1,c.23.6.1 29632,31259 1i1qB 192 19.96 c.23.16.1 61544 3lhdA 253 20.24 1mucA 373 20.68 c.1.11.2,d.54.1.1 29236,38880 3fv9A 386 20.92 1jr1A 514 21.38 d.37.1.1,c.1.5.1 144358,63241 2oz8A 389 21.41 1nt2A 210 22.53 c.66.1.3 86149 3mkcA 394 23.16 1twdA 256 23.22 c.1.30.1 107397 1i7qB 193 23.73 c.23.16.1 61902 3mb5A 255 23.74 1o54A 277 23.89 c.66.1.13 92482 3h7vA 330 24.44 2gdqA 382 25.24 c.1.11.2,d.54.1.1 135020,135021 3i6eA 385 25.47 2hneA 436 26.61 1tb3A 352 26.62 c.1.4.1 119205 2pceA 386 27.52 1he2A 206 28.14 c.2.1.2 60966 2qr6A 393 28.52 3hl0A 353 29.06 1g8sA 230 29.62 c.66.1.3 90507 1pii 452 29.77 3dg6A 367 30.67 3c3pA 210 31.09 2ps2A 371 31.11 2jacA 110 31.18 1o1yA 239 31.33 c.23.16.1 86554 3hojA 248 31.49 1jg1A 235 31.73 c.66.1.7 66661 3ct2A 382 32.17 3mqtA 394 32.76 3ic5A 118 34.29 1y80A 210 35.01 3k94A 223 35.68 1hyuA 521 35.78 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 3iieA 401 36.99 3ik4A 365 38.18 2vycA 755 39.66 1tqxA 227 40.20 c.1.2.2 112614 2nyuA 196 41.19 1mioB 458 42.29 c.92.2.3 35602 2v5jA 287 43.08 1o5oA 221 43.98 c.61.1.1 92509 3iv6A 261 44.00 2yxbA 161 44.43 1liiA 363 44.82 c.72.1.1 73921 2pwyA 258 44.86 2oqhA 385 45.38 3i4kA 383 46.17 2rexB 197 46.89 3fxgA 455 47.30 2o56A 407 47.53 3es7A 391 47.55 3h12A 397 48.15 3dgbA 382 49.06 2gl5A 410 51.29 c.1.11.2,d.54.1.1 135336,135337 1izcA 339 51.57 c.1.12.5 83838 3h2bA 203 52.80 1qguB 519 53.15 c.92.2.3 35626 1rd5A 262 53.20 c.1.2.4 111772 2pmqA 377 53.86 3fbsA 297 54.07 3cbgA 232 54.17 2voyI 128 54.23 2hzgA 401 54.46 2qgyA 391 54.77 1qopA 268 54.83 c.1.2.4 28570 1efaA 333 55.66 a.35.1.5,c.93.1.1 17106,35691 2nliA 368 56.09 2qjjA 402 56.81 2pozA 392 57.26 3dfhA 394 58.44 2rduA 387 58.48 3gy1A 408 60.05 2rdxA 379 60.71 3kp1A 763 61.40 1goxA 369 61.79 c.1.4.1 28607 1jvsA 400 61.82 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 2zadA 345 63.95 1r0kA 388 64.05 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 2yvlA 248 64.30 1lst 239 64.49 3gjyA 317 65.42 1qpoA 284 66.12 c.1.17.1,d.41.2.1 29561,38597 1jubA 311 66.13 c.1.4.1 90908 1ta9A 450 67.13 2p0iA 456 69.58 2oztA 332 70.60 2du2A 374 70.80 3c6kA 381 71.09 1rfeA 162 71.15 b.45.1.1 111796 2wa7A 245 71.30 3fcpA 381 71.51 1wmdA 434 73.12 b.18.1.20,c.41.1.1 109408,109409 2dkjA 407 73.23 1q0qA 406 75.69 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1yadA 221 76.72 3gd6A 391 77.30 3fyyA 391 77.50 1o6cA 388 77.70 c.87.1.3 92565 2oqyA 391 78.21 1nu5A 370 78.26 c.1.11.2,d.54.1.1 92183,92184 1ixkA 315 78.39 c.66.1.38 90716 2gffA 106 79.14 1hslA 238 79.71 c.94.1.1 35804 1nrwA 288 80.10 c.108.1.10 86128 2nqlA 388 80.54 3lm8A 222 81.22 1igs 248 83.77 3d5jA 112 84.47 1nsj 205 84.53 2pqmA 343 84.74 1uirA 314 84.88 c.66.1.17 99429 1kfcA 268 85.25 c.1.2.4 77371 2i2xB 258 87.44 1zx0A 236 88.28 c.66.1.16 125757 1dorA 311 88.29 c.1.4.1 28595 2dztA 248 88.84 1s2oA 244 89.59 c.108.1.10 118846