# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ys7A 233 5.11e-13 a.4.6.1,c.23.1.1 123961,123962 3gt7A 154 6.33e-13 1w25A 459 7.84e-13 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3dgfC 122 1.03e-12 3gl9A 122 1.12e-12 2zwmA 130 1.37e-12 3cg4A 142 1.48e-12 3crnA 132 1.64e-12 1s8nA 205 1.78e-12 c.23.1.1 105374 3cfyA 137 1.82e-12 2jbaA 127 2.18e-12 1zh2A 121 2.27e-12 c.23.1.1 125069 2qzjA 136 2.37e-12 3f6pA 120 2.43e-12 2pl1A 121 2.62e-12 c.23.1.1 149610 1kgsA 225 2.67e-12 a.4.6.1,c.23.1.1 68596,68597 3c3mA 138 2.94e-12 3lteA 132 3.43e-12 1ab6A 125 3.52e-12 c.23.1.1 31054 2zayA 147 3.56e-12 1zesA 125 3.60e-12 c.23.1.1 124994 1u8tA 129 3.65e-12 c.23.1.1 113192 1ab5A 125 4.37e-12 c.23.1.1 31056 3i5aA 334 4.50e-12 1yioA 208 4.60e-12 a.4.6.2,c.23.1.1 123326,123327 1mb3A 124 4.81e-12 c.23.1.1 78907 1dbwA 126 4.93e-12 c.23.1.1 31095 3cnbA 143 4.97e-12 1l5zA 155 5.35e-12 c.23.1.1 77722 3khtA 144 5.78e-12 1zgzA 122 6.17e-12 c.23.1.1 125065 1mvoA 136 6.24e-12 c.23.1.1 79513 3grcA 140 6.30e-12 1jbeA 128 6.68e-12 c.23.1.1 62845 1xhfA 123 6.82e-12 c.23.1.1 122003 1e6mA 128 6.84e-12 c.23.1.1 31039 2a9oA 120 6.86e-12 c.23.1.1 126444 3lufA 259 6.89e-12 3hdgA 137 7.18e-12 1b00A 127 7.25e-12 c.23.1.1 31122 3hv2A 153 7.98e-12 3h5iA 140 8.53e-12 1qkkA 155 8.67e-12 c.23.1.1 31104 3h1gA 129 8.79e-12 3a10A 116 9.68e-12 3jteA 143 9.76e-12 2oqrA 230 1.11e-11 2vuhB 139 1.27e-11 1tmyA 120 1.41e-11 c.23.1.1 31083 1srrA 124 1.43e-11 c.23.1.1 31110 3h1fA 129 1.45e-11 3gwgA 129 1.56e-11 1k66A 149 1.61e-11 c.23.1.1 90941 1k68A 140 1.70e-11 c.23.1.1 90943 3chy 128 1.73e-11 2qxyA 142 1.87e-11 2jk1A 139 1.99e-11 1dcfA 136 2.05e-11 c.23.1.2 31124 1a04A 215 2.14e-11 a.4.6.2,c.23.1.1 16234,31089 1dc7A 124 2.25e-11 c.23.1.1 31093 3breA 358 2.31e-11 1p2fA 220 2.37e-11 a.4.6.1,c.23.1.1 87720,87721 1u0sY 118 2.65e-11 c.23.1.1 107566 3hdvA 136 2.66e-11 2qr3A 140 2.69e-11 3eulA 152 2.98e-11 1i3cA 149 3.03e-11 c.23.1.1 71112 3hzhA 157 3.45e-11 3cz5A 153 3.71e-11 2gkgA 127 3.72e-11 3i42A 127 4.02e-11 3ktoA 136 4.06e-11 2rjnA 154 4.22e-11 1oxkB 134 4.24e-11 c.23.1.1 93691 3b2nA 133 4.73e-11 3luaA 140 5.39e-11 3c97A 140 5.44e-11 3f6cA 134 7.20e-11 2qvgA 143 8.96e-11 2plnA 137 9.41e-11 3cg0A 140 9.59e-11 2r25B 133 1.06e-10 c.23.1.1 151530 3hebA 152 1.15e-10 3kcnA 151 1.24e-10 1a2oA 349 1.48e-10 c.23.1.1,c.40.1.1 31120,32479 2qv0A 143 2.86e-10 3cu5A 141 3.07e-10 2rdmA 132 3.69e-10 1dz3A 130 4.43e-10 c.23.1.1 31105 2b4aA 138 1.49e-09 c.23.1.1 127817 3ilhA 146 2.31e-09 3eodA 130 3.51e-09 3eqzA 135 4.59e-09 3kyjB 145 8.42e-09 2qsjA 154 1.80e-07 3kloA 225 2.43e-07 1qo0D 196 6.15e-07 c.23.1.3 31125 3cloA 258 5.56e-05 2ch4A 320 0.000295 b.40.7.1,d.122.1.3 130447,130448 1mu5A 471 0.1275 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1b3qA 379 0.8424 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 3gbgA 276 1.346 1xm3A 264 2.135 c.1.31.1 115461 1bqgA 451 2.389 c.1.11.2,d.54.1.1 29217,38861 1h5yA 253 2.492 c.1.2.1 65638 1bqg 451 2.515 2gjlA 328 3.104 2vycA 755 3.333 1jdfA 447 3.440 c.1.11.2,d.54.1.1 62897,62898 1ec7A 446 3.989 c.1.11.2,d.54.1.1 29218,38862 3mznA 450 4.053 1ccwA 137 4.075 c.23.6.1 31238 2tpsA 227 5.203 c.1.3.1 28591 1thfD 253 6.031 c.1.2.1 28535 3kyiB 145 6.603 1m2eA 135 8.484 c.23.1.5 78478 3memA 457 8.935 3iipA 256 9.742 3iivA 263 10.12 1wv2A 265 10.18 c.1.31.1 114910 1vh7A 265 10.25 c.1.2.1 100646 3iioA 262 11.32 1y80A 210 11.64 2a0nA 265 12.33 c.1.2.1 125961 2yxbA 161 12.56 1yxyA 234 12.98 c.1.2.5 124203 3fz9A 112 13.77 1jjeA 222 14.60 d.157.1.1 63117 2xdqA 460 15.51 1i1qB 192 16.33 c.23.16.1 61544 1yeyA 444 16.58 c.1.11.2,d.54.1.1 116664,116665 3aekA 437 16.58 2p8bA 369 18.49 1i7qB 193 18.66 c.23.16.1 61902 2i2xB 258 19.30 2yxeA 215 19.43 2og9A 393 20.25 1y0eA 223 20.46 c.1.2.5 116297 3exrA 221 20.98 1o4uA 285 21.45 c.1.17.1,d.41.2.1 86624,86625 3kp1A 763 21.77 1qpoA 284 22.24 c.1.17.1,d.41.2.1 29561,38597 1mdlA 359 23.12 c.1.11.2,d.54.1.1 29247,38891 1vhcA 224 23.62 c.1.10.1 100661 3i6eA 385 24.44 2nv1A 305 24.56 2qddA 378 24.59 2pp3A 398 24.90 2hxtA 441 25.35 3cniA 156 25.39 1ep3A 311 25.46 c.1.4.1 28597 2htmA 268 27.57 2ovlA 371 27.81 2qdeA 397 28.63 1kbjA 412 29.35 c.1.4.1 72280 2qr6A 393 29.41 1qdlB 195 29.53 c.23.16.1 31437 1a53 247 30.64 2hneA 436 31.44 1xbyA 216 32.01 c.1.2.3 121846 3mkcA 394 32.06 3iebA 218 34.55 1fwrA 213 35.32 c.1.10.1 29164 2oz8A 389 36.10 2dztA 248 36.95 3i4kA 383 38.44 2yzrA 330 40.24 2jbmA 299 41.02 2pgwA 384 41.24 2qgyA 391 41.74 3ct2A 382 41.93 1hslA 238 42.54 c.94.1.1 35804 3dgbA 382 42.75 3bw2A 369 43.12 1jjtA 228 45.81 d.157.1.1 63139 3dfhA 394 45.95 1bmtA 246 46.21 a.46.1.1,c.23.6.1 17757,31235 1tkkA 366 47.05 c.1.11.2,d.54.1.1 107089,107090 1twdA 256 47.74 c.1.30.1 107397 2o20A 332 48.48 1wl8A 189 49.04 c.23.16.1 120997 3g1aA 228 49.09 3igsA 232 49.64 3go2A 409 50.02 5reqA 727 53.21 c.1.19.1,c.23.6.1 29632,31259 2z6iA 332 54.08 1c3oB 382 54.41 c.8.3.1,c.23.16.1 30744,31421 2p0iA 456 54.84 1lst 239 55.83 1vl0A 292 55.95 c.2.1.2 108704 3iieA 401 56.16 1yadA 221 56.38 2oqhA 385 57.29 1reqA 727 57.56 c.1.19.1,c.23.6.1 29620,31247 2zz3A 252 59.63 1jg1A 235 59.74 c.66.1.7 66661 1goxA 369 60.52 c.1.4.1 28607 1dl5A 317 60.79 c.66.1.7,d.197.1.1 64720,64721 3ekgA 404 62.07 3jr2A 218 62.10 1r30A 369 62.30 c.1.28.1 96895 1k7yA 577 62.48 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 3mqtA 394 62.64 1dpeA 507 62.93 c.94.1.1 35799 3ic5A 118 64.14 3gy1A 408 64.88 1wbhA 214 67.77 c.1.10.1 120845 1zq6A 359 68.03 2nyuA 196 68.10 3g1vA 228 68.79 1xi3A 215 68.97 c.1.3.1 109601 1qapA 296 71.41 c.1.17.1,d.41.2.1 29559,38595 1x1oA 286 72.11 1mucA 373 72.76 c.1.11.2,d.54.1.1 29236,38880 1sjdA 368 72.80 c.1.11.2,d.54.1.1 105632,105633 1qcwA 410 75.05 c.1.4.1 28622 2tysA 268 76.21 c.1.2.4 28572 2pr7A 137 76.61 3fcpA 381 77.30 2pyyA 228 77.31 3c3pA 210 77.35 1r0mA 375 79.86 c.1.11.2,d.54.1.1 104747,104748 2v25A 259 80.50 1kfcA 268 80.87 c.1.2.4 77371 2gdqA 382 83.15 c.1.11.2,d.54.1.1 135020,135021 1cs0B 382 83.28 c.8.3.1,c.23.16.1 30740,31417 2zadA 345 83.40 3h2bA 203 84.03 1izcA 339 84.53 c.1.12.5 83838 1euaA 213 85.10 c.1.10.1 29155 2oo6A 409 85.23 1qh8B 519 86.66 c.92.2.3 35634 2voyI 128 87.05 1lh0A 213 88.42 c.61.1.1 73896 1h7wA 1025 89.07 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007