# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oqrA 230 5.57e-12 3gt7A 154 7.38e-12 3c3mA 138 7.85e-12 2zayA 147 8.09e-12 3cfyA 137 8.42e-12 3cg4A 142 8.44e-12 1ys7A 233 8.97e-12 a.4.6.1,c.23.1.1 123961,123962 3dgfC 122 1.00e-11 1w25A 459 1.27e-11 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3crnA 132 1.38e-11 3gl9A 122 1.42e-11 3lufA 259 1.59e-11 1zh2A 121 1.61e-11 c.23.1.1 125069 2zwmA 130 1.67e-11 3h1gA 129 1.76e-11 1s8nA 205 1.95e-11 c.23.1.1 105374 2qr3A 140 1.97e-11 2qzjA 136 2.01e-11 2jbaA 127 2.28e-11 2pl1A 121 2.36e-11 c.23.1.1 149610 1kgsA 225 2.52e-11 a.4.6.1,c.23.1.1 68596,68597 3lteA 132 3.14e-11 3cnbA 143 3.24e-11 1l5zA 155 3.29e-11 c.23.1.1 77722 3khtA 144 3.45e-11 1yioA 208 3.49e-11 a.4.6.2,c.23.1.1 123326,123327 3h5iA 140 3.51e-11 3grcA 140 3.99e-11 3f6pA 120 4.00e-11 3c97A 140 4.07e-11 1ab6A 125 4.42e-11 c.23.1.1 31054 1zesA 125 4.65e-11 c.23.1.1 124994 1u8tA 129 4.91e-11 c.23.1.1 113192 1ab5A 125 5.04e-11 c.23.1.1 31056 1zgzA 122 5.38e-11 c.23.1.1 125065 1qkkA 155 5.47e-11 c.23.1.1 31104 1mvoA 136 5.61e-11 c.23.1.1 79513 1dbwA 126 5.65e-11 c.23.1.1 31095 3gwgA 129 5.94e-11 3h1fA 129 6.51e-11 1e6mA 128 6.69e-11 c.23.1.1 31039 1xhfA 123 7.11e-11 c.23.1.1 122003 3hv2A 153 7.39e-11 3a10A 116 7.62e-11 1p2fA 220 8.04e-11 a.4.6.1,c.23.1.1 87720,87721 1jbeA 128 8.08e-11 c.23.1.1 62845 3hdgA 137 8.11e-11 3i5aA 334 8.42e-11 2a9oA 120 8.67e-11 c.23.1.1 126444 2gkgA 127 9.40e-11 3cg0A 140 9.50e-11 1mb3A 124 1.03e-10 c.23.1.1 78907 2qxyA 142 1.14e-10 1b00A 127 1.25e-10 c.23.1.1 31122 1dc7A 124 1.28e-10 c.23.1.1 31093 3jteA 143 1.32e-10 3kcnA 151 1.32e-10 2vuhB 139 1.42e-10 1i3cA 149 1.44e-10 c.23.1.1 71112 1srrA 124 1.48e-10 c.23.1.1 31110 3hebA 152 1.51e-10 1k66A 149 1.56e-10 c.23.1.1 90941 1k68A 140 1.57e-10 c.23.1.1 90943 3chy 128 1.64e-10 1a04A 215 1.72e-10 a.4.6.2,c.23.1.1 16234,31089 2r25B 133 1.74e-10 c.23.1.1 151530 1dcfA 136 1.76e-10 c.23.1.2 31124 2jk1A 139 1.86e-10 3luaA 140 1.88e-10 3breA 358 2.03e-10 1tmyA 120 2.14e-10 c.23.1.1 31083 2plnA 137 2.33e-10 3eulA 152 2.52e-10 3i42A 127 2.58e-10 3f6cA 134 2.70e-10 2rjnA 154 2.77e-10 3cz5A 153 2.80e-10 3b2nA 133 2.82e-10 3ktoA 136 2.88e-10 1oxkB 134 3.08e-10 c.23.1.1 93691 3hdvA 136 3.22e-10 3hzhA 157 3.60e-10 1u0sY 118 3.63e-10 c.23.1.1 107566 2qvgA 143 3.89e-10 1dz3A 130 6.54e-10 c.23.1.1 31105 2rdmA 132 8.79e-10 2qv0A 143 1.17e-09 3cu5A 141 1.82e-09 2b4aA 138 3.41e-09 c.23.1.1 127817 3eqzA 135 3.43e-09 3ilhA 146 4.23e-09 3eodA 130 6.92e-09 3kyjB 145 1.87e-08 1a2oA 349 6.26e-08 c.23.1.1,c.40.1.1 31120,32479 2qsjA 154 9.35e-08 1qo0D 196 3.78e-07 c.23.1.3 31125 3kloA 225 5.89e-07 3cloA 258 4.91e-06 2ch4A 320 0.000222 b.40.7.1,d.122.1.3 130447,130448 1mu5A 471 0.06635 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 3gbgA 276 0.08029 1ec7A 446 0.1222 c.1.11.2,d.54.1.1 29218,38862 1bqgA 451 0.2554 c.1.11.2,d.54.1.1 29217,38861 1bqg 451 0.5373 1wv2A 265 0.7083 c.1.31.1 114910 1xm3A 264 0.8692 c.1.31.1 115461 1gpmA 525 1.594 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2og9A 393 2.201 1id1A 153 2.944 c.2.1.9 62286 2p8bA 369 3.294 1gq2A 555 3.354 c.2.1.7,c.58.1.3 70308,70309 2a0nA 265 3.390 c.1.2.1 125961 2tpsA 227 3.444 c.1.3.1 28591 1izcA 339 3.502 c.1.12.5 83838 1twdA 256 3.517 c.1.30.1 107397 1ypfA 336 3.567 1jdfA 447 3.681 c.1.11.2,d.54.1.1 62897,62898 1b3qA 379 3.931 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 1a9xB 379 3.975 c.8.3.1,c.23.16.1 30732,31409 1sqgA 429 4.241 a.79.1.3,c.66.1.38 105912,105913 1h5yA 253 4.378 c.1.2.1 65638 2qddA 378 5.468 1qr6A 584 5.530 c.2.1.7,c.58.1.3 30293,33941 1a53 247 5.532 3bw2A 369 6.572 3kyiB 145 6.644 3iipA 256 7.011 3iv6A 261 7.844 1i1qB 192 8.064 c.23.16.1 61544 1vh7A 265 8.910 c.1.2.1 100646 3h7vA 330 9.014 3igsA 232 11.41 1qh8B 519 11.64 c.92.2.3 35634 1thfD 253 11.74 c.1.2.1 28535 3memA 457 12.07 1ep3A 311 12.59 c.1.4.1 28597 2htmA 268 12.65 1mdlA 359 13.52 c.1.11.2,d.54.1.1 29247,38891 1m1nB 522 13.59 c.92.2.3 78418 3hojA 248 14.48 1dxeA 256 14.60 c.1.12.5 29310 2ovlA 371 16.10 2voyI 128 16.77 2zc8A 369 17.44 1wl8A 189 18.76 c.23.16.1 120997 1xi3A 215 19.03 c.1.3.1 109601 3c96A 415 19.45 c.3.1.2,d.16.1.2 156122,156123 1o5oA 221 20.20 c.61.1.1 92509 3hl0A 353 20.62 1jjeA 222 21.64 d.157.1.1 63117 1wueA 386 21.76 c.1.11.2,d.54.1.1 114892,114893 3iioA 262 21.86 2xb2A 411 22.54 1nu5A 370 23.07 c.1.11.2,d.54.1.1 92183,92184 2vwsA 267 24.95 2v8hA 474 26.03 1goxA 369 26.72 c.1.4.1 28607 1qtwA 285 27.00 c.1.15.1 29392 2chuA 296 27.32 c.92.2.4 130485 1ta9A 450 27.55 1qguB 519 27.78 c.92.2.3 35626 1pii 452 27.83 1p4cA 380 28.70 c.1.4.1 94100 2gjlA 328 29.17 3i6bA 180 29.57 2o56A 407 29.78 2oo6A 409 30.35 2p0iA 456 30.40 2xdqA 460 30.50 1y0eA 223 30.54 c.1.2.5 116297 3fz9A 112 30.84 1sjdA 368 30.88 c.1.11.2,d.54.1.1 105632,105633 2yzrA 330 31.62 3mb5A 255 31.62 1bw0A 416 31.69 c.67.1.1 34385 1y80A 210 32.02 1r0mA 375 32.35 c.1.11.2,d.54.1.1 104747,104748 1i7qB 193 32.76 c.23.16.1 61902 2qr6A 393 32.78 3mqtA 394 32.97 1xhbA 472 33.19 b.42.2.1,c.68.1.17 115290,115291 1ccwA 137 33.70 c.23.6.1 31238 1yxyA 234 33.99 c.1.2.5 124203 3fxgA 455 35.12 3cniA 156 35.33 3mznA 450 35.98 3go2A 409 36.01 3eagA 326 36.40 1vgvA 384 37.40 c.87.1.3 100608 2hxtA 441 38.32 2oz8A 389 38.36 3iivA 263 38.76 3civA 343 38.81 1hslA 238 38.89 c.94.1.1 35804 3gd6A 391 39.61 1jpdX 324 40.23 c.1.11.2,d.54.1.1 67014,67015 1fwrA 213 41.15 c.1.10.1 29164 1nsj 205 41.97 1xbyA 216 44.20 c.1.2.3 121846 3gueA 484 44.71 2yxbA 161 44.79 3dg6A 367 46.10 3ik4A 365 46.15 2rexB 197 47.82 3iruA 277 49.97 1gw9A 388 50.39 c.1.15.3 70658 3bkwA 243 52.29 3ic8A 310 53.90 1qopA 268 54.65 c.1.2.4 28570 2v5jA 287 55.86 1ve3A 227 56.07 c.66.1.43 120010 2c6qA 351 57.71 1m32A 366 58.77 c.67.1.3 78508 1qdlB 195 59.36 c.23.16.1 31437 1g67A 225 60.54 c.1.3.1 60311 3ferA 262 61.61 1gylA 369 61.71 c.1.4.1 28610 3hblA 1150 62.35 3b5vA 248 63.68 1oroA 213 63.69 c.61.1.1 34093 3exrA 221 64.03 3dfhA 394 65.92 1tkkA 366 66.11 c.1.11.2,d.54.1.1 107089,107090 1nrwA 288 66.81 c.108.1.10 86128 1yadA 221 67.02 3i6eA 385 67.95 1lh0A 213 68.36 c.61.1.1 73896 3kbrA 239 68.57 2podA 410 69.04 2pgwA 384 69.18 1vzwA 244 71.01 c.1.2.1 120553 2gdqA 382 71.68 c.1.11.2,d.54.1.1 135020,135021 3lm8A 222 72.13 1qo2A 241 72.52 c.1.2.1 28533 2a67A 167 72.85 3bjsA 428 72.90 2zxdA 455 73.06 3gjyA 317 74.06 1eyzA 392 74.18 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 3lacA 215 74.57 2hzgA 401 75.01 2nyuA 196 75.54 2vycA 755 76.67 3ib0A 345 77.41 2tysA 268 77.48 c.1.2.4 28572 1z2lA 423 77.78 c.56.5.4,d.58.19.1 124383,124384 3ctpA 330 77.84 1znbA 232 78.20 d.157.1.1 42039 2nq5A 755 78.80 1xviA 275 78.84 c.108.1.10 116088 2jjqA 425 80.10 3lk7A 451 80.39 1mioB 458 80.80 c.92.2.3 35602 1geqA 248 81.20 c.1.2.4 28589 2du2A 374 81.64 1r0kA 388 82.49 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 2eu9A 355 82.92 3i6sA 649 83.89 3beoA 375 85.51 1me8A 503 86.43 c.1.5.1 79028 1yl5A 247 88.22 c.2.1.3,d.81.1.3 123617,123618 2rdxA 379 88.42 2ixeA 271 88.97 1yt8A 539 89.22 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999