# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w25A 459 1.87e-14 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3gt7A 154 2.66e-14 2oqrA 230 3.38e-14 1ys7A 233 3.52e-14 a.4.6.1,c.23.1.1 123961,123962 3cg4A 142 4.04e-14 3cfyA 137 5.64e-14 3crnA 132 5.79e-14 1kgsA 225 5.97e-14 a.4.6.1,c.23.1.1 68596,68597 3dgfC 122 6.08e-14 2zayA 147 6.28e-14 3gl9A 122 6.39e-14 2qzjA 136 7.33e-14 3c3mA 138 8.27e-14 1s8nA 205 8.91e-14 c.23.1.1 105374 3lufA 259 9.42e-14 2zwmA 130 1.01e-13 2pl1A 121 1.12e-13 c.23.1.1 149610 1zh2A 121 1.38e-13 c.23.1.1 125069 2jbaA 127 1.39e-13 3khtA 144 1.64e-13 1l5zA 155 1.73e-13 c.23.1.1 77722 3cnbA 143 1.86e-13 1yioA 208 1.91e-13 a.4.6.2,c.23.1.1 123326,123327 3lteA 132 1.92e-13 1ab6A 125 2.12e-13 c.23.1.1 31054 1ab5A 125 2.21e-13 c.23.1.1 31056 3h5iA 140 2.29e-13 3grcA 140 2.39e-13 1zesA 125 2.48e-13 c.23.1.1 124994 3c97A 140 2.48e-13 3h1gA 129 2.49e-13 1u8tA 129 2.60e-13 c.23.1.1 113192 3f6pA 120 2.73e-13 1mvoA 136 3.07e-13 c.23.1.1 79513 1qkkA 155 3.15e-13 c.23.1.1 31104 1zgzA 122 3.38e-13 c.23.1.1 125065 1e6mA 128 3.84e-13 c.23.1.1 31039 3hv2A 153 3.89e-13 1jbeA 128 4.14e-13 c.23.1.1 62845 1xhfA 123 4.27e-13 c.23.1.1 122003 2a9oA 120 4.78e-13 c.23.1.1 126444 3a10A 116 4.97e-13 3hdgA 137 4.99e-13 3gwgA 129 5.22e-13 1mb3A 124 5.37e-13 c.23.1.1 78907 3i5aA 334 5.45e-13 3cg0A 140 5.57e-13 3kcnA 151 6.51e-13 1dbwA 126 6.59e-13 c.23.1.1 31095 3hebA 152 8.32e-13 3jteA 143 8.52e-13 3h1fA 129 8.78e-13 2gkgA 127 8.87e-13 2vuhB 139 9.38e-13 1k68A 140 1.01e-12 c.23.1.1 90943 1dcfA 136 1.02e-12 c.23.1.2 31124 1b00A 127 1.03e-12 c.23.1.1 31122 1k66A 149 1.04e-12 c.23.1.1 90941 2qxyA 142 1.05e-12 1p2fA 220 1.07e-12 a.4.6.1,c.23.1.1 87720,87721 1a04A 215 1.13e-12 a.4.6.2,c.23.1.1 16234,31089 3chy 128 1.13e-12 2jk1A 139 1.28e-12 1srrA 124 1.35e-12 c.23.1.1 31110 2qr3A 140 1.40e-12 1i3cA 149 1.45e-12 c.23.1.1 71112 1tmyA 120 1.46e-12 c.23.1.1 31083 2r25B 133 1.46e-12 c.23.1.1 151530 2plnA 137 1.69e-12 3luaA 140 1.70e-12 3cz5A 153 1.76e-12 2rjnA 154 1.79e-12 3f6cA 134 1.90e-12 3eulA 152 1.92e-12 1u0sY 118 2.10e-12 c.23.1.1 107566 3i42A 127 2.24e-12 1oxkB 134 2.30e-12 c.23.1.1 93691 3breA 358 2.35e-12 3b2nA 133 2.42e-12 3hdvA 136 2.59e-12 2qvgA 143 2.67e-12 3ktoA 136 2.76e-12 3hzhA 157 4.65e-12 1dc7A 124 5.08e-12 c.23.1.1 31093 1a2oA 349 5.16e-12 c.23.1.1,c.40.1.1 31120,32479 1dz3A 130 6.07e-12 c.23.1.1 31105 2qv0A 143 9.25e-12 3cu5A 141 2.00e-11 2rdmA 132 2.20e-11 3eqzA 135 5.55e-11 3ilhA 146 6.60e-11 3eodA 130 8.31e-11 2b4aA 138 9.04e-11 c.23.1.1 127817 3kyjB 145 2.68e-10 2qsjA 154 1.96e-09 3kloA 225 6.68e-09 1qo0D 196 4.06e-08 c.23.1.3 31125 3cloA 258 5.14e-06 2ch4A 320 7.83e-06 b.40.7.1,d.122.1.3 130447,130448 1mu5A 471 0.000539 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1b3qA 379 0.2186 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 3gbgA 276 0.3539 1cs0B 382 0.6030 c.8.3.1,c.23.16.1 30740,31417 1c3oB 382 0.6963 c.8.3.1,c.23.16.1 30744,31421 1jdfA 447 0.8183 c.1.11.2,d.54.1.1 62897,62898 1ec7A 446 0.8246 c.1.11.2,d.54.1.1 29218,38862 1wv2A 265 0.8859 c.1.31.1 114910 1bqg 451 1.017 1xm3A 264 1.120 c.1.31.1 115461 1h5yA 253 1.430 c.1.2.1 65638 1gpmA 525 1.947 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2a0nA 265 2.395 c.1.2.1 125961 1bqgA 451 2.467 c.1.11.2,d.54.1.1 29217,38861 3memA 457 2.684 3kyiB 145 3.056 3mznA 450 3.069 2htmA 268 3.247 2z6iA 332 3.998 2tpsA 227 4.301 c.1.3.1 28591 2gjlA 328 4.668 3iipA 256 5.141 1y0eA 223 5.560 c.1.2.5 116297 1thfD 253 6.506 c.1.2.1 28535 1c30B 382 6.698 c.8.3.1,c.23.16.1 30736,31413 3bw2A 369 6.917 3iioA 262 7.159 1a9xB 379 7.279 c.8.3.1,c.23.16.1 30732,31409 1qdlB 195 7.326 c.23.16.1 31437 1vh7A 265 7.986 c.1.2.1 100646 1a53 247 8.023 1wl8A 189 8.238 c.23.16.1 120997 3ekgA 404 8.257 1r0mA 375 8.477 c.1.11.2,d.54.1.1 104747,104748 1wueA 386 8.719 c.1.11.2,d.54.1.1 114892,114893 1sjdA 368 9.700 c.1.11.2,d.54.1.1 105632,105633 3iivA 263 9.736 2og9A 393 10.92 1jr1A 514 11.22 d.37.1.1,c.1.5.1 144358,63241 1xi3A 215 11.68 c.1.3.1 109601 2oz8A 389 12.52 2pp3A 398 13.08 3fz9A 112 13.12 2pgwA 384 13.71 1yxyA 234 13.86 c.1.2.5 124203 3cniA 156 13.86 1mucA 373 13.97 c.1.11.2,d.54.1.1 29236,38880 2p8bA 369 14.37 1m1nB 522 15.11 c.92.2.3 78418 2ps2A 371 15.93 2tysA 268 15.95 c.1.2.4 28572 2vwsA 267 15.99 2ovlA 371 16.44 3dg6A 367 16.74 1ep3A 311 16.92 c.1.4.1 28597 2qdeA 397 17.26 2oo6A 409 17.41 3igsA 232 17.77 3aekA 437 17.87 5reqA 727 18.12 c.1.19.1,c.23.6.1 29632,31259 2qddA 378 18.45 2zc8A 369 18.49 2yzrA 330 18.56 1kbjA 412 18.63 c.1.4.1 72280 1ccwA 137 19.40 c.23.6.1 31238 1qh8B 519 19.66 c.92.2.3 35634 1i7qB 193 19.71 c.23.16.1 61902 2xdqA 460 19.76 1i1qB 192 19.86 c.23.16.1 61544 3i6eA 385 20.05 3mkcA 394 20.35 2ox4A 403 20.52 3fv9A 386 20.62 2hxtA 441 20.80 1yeyA 444 21.05 c.1.11.2,d.54.1.1 116664,116665 3go2A 409 21.29 3mqtA 394 21.61 1nsj 205 21.69 1tb3A 352 21.74 c.1.4.1 119205 1reqA 727 22.26 c.1.19.1,c.23.6.1 29620,31247 1jjeA 222 22.82 d.157.1.1 63117 1izcA 339 22.88 c.1.12.5 83838 1mdlA 359 22.92 c.1.11.2,d.54.1.1 29247,38891 2oz3A 404 23.59 2oqhA 385 23.61 1sqgA 429 23.99 a.79.1.3,c.66.1.38 105912,105913 1tkkA 366 24.09 c.1.11.2,d.54.1.1 107089,107090 2qr6A 393 24.37 2i2xB 258 25.15 1twdA 256 25.79 c.1.30.1 107397 1tqxA 227 26.61 c.1.2.2 112614 2p0iA 456 26.81 2yweA 600 28.36 3ce9A 354 28.85 3h7vA 330 29.47 1lst 239 29.60 2pceA 386 30.18 1pii 452 32.03 2nliA 368 32.52 3ct2A 382 32.67 1goxA 369 33.07 c.1.4.1 28607 3fcpA 381 33.57 1nrwA 288 35.22 c.108.1.10 86128 1he2A 206 36.14 c.2.1.2 60966 2hneA 436 36.83 1xbyA 216 37.52 c.1.2.3 121846 1dxeA 256 37.87 c.1.12.5 29310 2gdqA 382 38.67 c.1.11.2,d.54.1.1 135020,135021 1p4cA 380 39.08 c.1.4.1 94100 2qgyA 391 39.13 3dfhA 394 40.75 2pozA 392 41.25 1nu5A 370 41.86 c.1.11.2,d.54.1.1 92183,92184 2yxbA 161 42.86 3iieA 401 43.00 1qopA 268 43.18 c.1.2.4 28570 2zadA 345 43.49 3hojA 248 44.95 3hl0A 353 45.27 1nt2A 210 45.40 c.66.1.3 86149 3dgbA 382 45.72 2rduA 387 46.27 1jvnA 555 46.54 c.1.2.1,c.23.16.1 67355,67356 2vycA 755 46.66 3k94A 223 47.01 1o5oA 221 48.25 c.61.1.1 92509 1hslA 238 49.45 c.94.1.1 35804 3lm8A 222 49.50 1rfeA 162 49.60 b.45.1.1 111796 3ik4A 365 49.69 1y80A 210 50.77 1o1yA 239 51.48 c.23.16.1 86554 1vr0A 247 51.65 c.148.1.1 120428 2v5jA 287 52.23 3fxgA 455 52.33 3i4kA 383 54.02 1qo2A 241 55.47 c.1.2.1 28533 1lstA 239 56.48 c.94.1.1 35755 2du2A 374 57.15 1qpoA 284 57.15 c.1.17.1,d.41.2.1 29561,38597 1id1A 153 57.42 c.2.1.9 62286 1fwrA 213 59.54 c.1.10.1 29164 1s2oA 244 59.68 c.108.1.10 118846 2pmqA 377 60.56 2qjjA 402 62.08 1h7wA 1025 62.89 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2nqlA 388 63.97 2rdxA 379 64.04 3c3pA 210 64.08 1hyuA 521 66.78 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1o4uA 285 67.86 c.1.17.1,d.41.2.1 86624,86625 1vhcA 224 67.99 c.1.10.1 100661 2dztA 248 68.06 1euaA 213 68.50 c.1.10.1 29155 3es7A 391 69.38 2gl5A 410 70.36 c.1.11.2,d.54.1.1 135336,135337 1j97A 211 70.70 c.108.1.4 62753 2hzgA 401 70.95 1jg1A 235 71.56 c.66.1.7 66661 3giyA 380 73.33 1mioB 458 73.38 c.92.2.3 35602 1geqA 248 74.59 c.1.2.4 28589 3gy1A 408 76.13 2nyuA 196 76.24 1qguB 519 76.54 c.92.2.3 35626 1gteA 1025 76.74 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1g8sA 230 77.78 c.66.1.3 90507 3fasA 260 79.11 1ixkA 315 80.29 c.66.1.38 90716 3kc2A 352 80.37 1ta9A 450 81.17 1g8aA 227 81.47 c.66.1.3 90506 1kfcA 268 81.54 c.1.2.4 77371 3h12A 397 82.13 3fbsA 297 82.84 1vr5A 547 83.02 c.94.1.1 120437 3bjsA 428 84.53 2voyI 128 85.46 1b0lA 691 86.94 c.94.1.2,c.94.1.2 35847,35848 3fyyA 391 87.35 2oyrA 258 87.46 c.66.1.55 149078 3ic5A 118 88.92 3iosA 150 88.92