# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oqrA 230 2.38e-14 3gt7A 154 2.64e-14 1w25A 459 2.77e-14 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 1ys7A 233 3.47e-14 a.4.6.1,c.23.1.1 123961,123962 3gl9A 122 4.34e-14 3cg4A 142 5.01e-14 3c3mA 138 5.55e-14 3dgfC 122 5.58e-14 3cfyA 137 5.75e-14 1kgsA 225 6.62e-14 a.4.6.1,c.23.1.1 68596,68597 2zwmA 130 7.24e-14 1s8nA 205 7.50e-14 c.23.1.1 105374 3lufA 259 8.39e-14 3crnA 132 9.71e-14 2zayA 147 1.08e-13 2jbaA 127 1.10e-13 3lteA 132 1.35e-13 2qzjA 136 1.38e-13 3c97A 140 1.45e-13 1l5zA 155 1.55e-13 c.23.1.1 77722 1yioA 208 1.59e-13 a.4.6.2,c.23.1.1 123326,123327 1zh2A 121 1.63e-13 c.23.1.1 125069 3khtA 144 1.67e-13 3h1gA 129 1.73e-13 2pl1A 121 1.81e-13 c.23.1.1 149610 3cnbA 143 2.23e-13 3f6pA 120 2.25e-13 1ab5A 125 2.60e-13 c.23.1.1 31056 1ab6A 125 2.61e-13 c.23.1.1 31054 1mvoA 136 2.98e-13 c.23.1.1 79513 1u8tA 129 3.01e-13 c.23.1.1 113192 1zesA 125 3.09e-13 c.23.1.1 124994 3a10A 116 3.15e-13 3grcA 140 3.60e-13 3h5iA 140 3.62e-13 2gkgA 127 3.73e-13 1qkkA 155 4.01e-13 c.23.1.1 31104 1zgzA 122 4.11e-13 c.23.1.1 125065 3cg0A 140 4.11e-13 1xhfA 123 4.16e-13 c.23.1.1 122003 3i5aA 334 4.27e-13 3hdgA 137 4.42e-13 3hv2A 153 4.43e-13 2a9oA 120 4.51e-13 c.23.1.1 126444 3kcnA 151 4.73e-13 3gwgA 129 5.27e-13 1jbeA 128 5.50e-13 c.23.1.1 62845 1e6mA 128 5.53e-13 c.23.1.1 31039 2r25B 133 5.69e-13 c.23.1.1 151530 1dbwA 126 6.47e-13 c.23.1.1 31095 1dc7A 124 6.91e-13 c.23.1.1 31093 2vuhB 139 7.32e-13 1mb3A 124 7.44e-13 c.23.1.1 78907 3luaA 140 7.51e-13 3h1fA 129 7.67e-13 1b00A 127 7.78e-13 c.23.1.1 31122 3jteA 143 8.21e-13 1dcfA 136 8.34e-13 c.23.1.2 31124 2jk1A 139 9.41e-13 1a04A 215 1.01e-12 a.4.6.2,c.23.1.1 16234,31089 1srrA 124 1.04e-12 c.23.1.1 31110 1p2fA 220 1.10e-12 a.4.6.1,c.23.1.1 87720,87721 2qr3A 140 1.15e-12 1k68A 140 1.16e-12 c.23.1.1 90943 2rjnA 154 1.26e-12 1k66A 149 1.37e-12 c.23.1.1 90941 3b2nA 133 1.45e-12 2qxyA 142 1.57e-12 3breA 358 1.57e-12 1oxkB 134 1.71e-12 c.23.1.1 93691 3cz5A 153 1.73e-12 2plnA 137 1.78e-12 3chy 128 1.81e-12 3hebA 152 1.86e-12 1i3cA 149 1.90e-12 c.23.1.1 71112 3f6cA 134 1.90e-12 3hdvA 136 2.05e-12 3i42A 127 2.07e-12 3eulA 152 2.09e-12 2qvgA 143 2.35e-12 1tmyA 120 2.95e-12 c.23.1.1 31083 1u0sY 118 3.57e-12 c.23.1.1 107566 1a2oA 349 4.59e-12 c.23.1.1,c.40.1.1 31120,32479 1dz3A 130 4.66e-12 c.23.1.1 31105 3hzhA 157 5.58e-12 3ktoA 136 5.63e-12 2qv0A 143 8.97e-12 3cu5A 141 1.82e-11 3eqzA 135 2.44e-11 2rdmA 132 2.54e-11 2b4aA 138 3.12e-11 c.23.1.1 127817 3ilhA 146 3.98e-11 3eodA 130 1.00e-10 3kyjB 145 3.35e-10 2qsjA 154 2.18e-09 3kloA 225 2.77e-09 1qo0D 196 1.59e-08 c.23.1.3 31125 3cloA 258 1.09e-06 2ch4A 320 4.59e-06 b.40.7.1,d.122.1.3 130447,130448 1mu5A 471 0.000594 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1b3qA 379 0.2235 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 3gbgA 276 0.3389 3memA 457 0.9159 1cs0B 382 1.078 c.8.3.1,c.23.16.1 30740,31417 1c3oB 382 1.426 c.8.3.1,c.23.16.1 30744,31421 1xm3A 264 1.886 c.1.31.1 115461 1wv2A 265 2.782 c.1.31.1 114910 3kyiB 145 3.165 1h5yA 253 4.085 c.1.2.1 65638 1ec7A 446 4.088 c.1.11.2,d.54.1.1 29218,38862 1bqg 451 4.414 1gpmA 525 4.469 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2tpsA 227 5.055 c.1.3.1 28591 1bqgA 451 5.783 c.1.11.2,d.54.1.1 29217,38861 1jdfA 447 7.223 c.1.11.2,d.54.1.1 62897,62898 1y0eA 223 7.357 c.1.2.5 116297 2z6iA 332 7.447 2htmA 268 10.09 3mznA 450 11.12 1qh8B 519 12.84 c.92.2.3 35634 3fz9A 112 13.06 1a9xB 379 13.09 c.8.3.1,c.23.16.1 30732,31409 1m1nB 522 13.56 c.92.2.3 78418 1wl8A 189 14.54 c.23.16.1 120997 2a0nA 265 14.82 c.1.2.1 125961 1jr1A 514 16.37 d.37.1.1,c.1.5.1 144358,63241 1c30B 382 16.83 c.8.3.1,c.23.16.1 30736,31413 1sjdA 368 17.07 c.1.11.2,d.54.1.1 105632,105633 1g8aA 227 17.49 c.66.1.3 90506 1j97A 211 18.10 c.108.1.4 62753 2yzrA 330 18.37 2qr6A 393 19.68 1nt2A 210 20.63 c.66.1.3 86149 1xi3A 215 20.68 c.1.3.1 109601 1rfeA 162 21.52 b.45.1.1 111796 1r0mA 375 21.97 c.1.11.2,d.54.1.1 104747,104748 1thfD 253 23.00 c.1.2.1 28535 1ep3A 311 23.12 c.1.4.1 28597 1a53 247 24.48 1yxyA 234 24.70 c.1.2.5 124203 3bw2A 369 24.75 1sqgA 429 25.37 a.79.1.3,c.66.1.38 105912,105913 3aekA 437 26.14 3cniA 156 26.40 1jjeA 222 26.86 d.157.1.1 63117 1wueA 386 28.93 c.1.11.2,d.54.1.1 114892,114893 2gjlA 328 30.62 2oo6A 409 31.11 3igsA 232 32.08 1qdlB 195 33.42 c.23.16.1 31437 2gffA 106 33.49 3iipA 256 33.79 1o6cA 388 34.14 c.87.1.3 92565 3go2A 409 35.20 2qddA 378 36.49 3ce9A 354 37.19 3ekgA 404 39.04 1kbjA 412 39.92 c.1.4.1 72280 1reqA 727 44.56 c.1.19.1,c.23.6.1 29620,31247 3fv9A 386 45.17 1tqxA 227 45.52 c.1.2.2 112614 2oqhA 385 47.94 1vh7A 265 48.97 c.1.2.1 100646 1he2A 206 49.10 c.2.1.2 60966 1hslA 238 50.72 c.94.1.1 35804 2ox4A 403 51.33 2p8bA 369 51.53 2hxtA 441 52.10 1yeyA 444 53.59 c.1.11.2,d.54.1.1 116664,116665 5reqA 727 55.60 c.1.19.1,c.23.6.1 29632,31259 1hyuA 521 55.82 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 3fbsA 297 56.63 1ta9A 450 58.73 3iioA 262 58.87 1qpoA 284 60.33 c.1.17.1,d.41.2.1 29561,38597 1s2oA 244 60.73 c.108.1.10 118846 2vycA 755 62.22 2tysA 268 63.24 c.1.2.4 28572 2og9A 393 63.32 1o5oA 221 63.91 c.61.1.1 92509 1tb3A 352 66.37 c.1.4.1 119205 1lst 239 67.75 1g8sA 230 68.58 c.66.1.3 90507 3iieA 401 69.26 1i1qB 192 69.60 c.23.16.1 61544 3iivA 263 69.72 1nsj 205 70.97 2pp3A 398 72.55 2ywqA 105 72.65 d.204.1.1 153812 2pgwA 384 73.74 1jg1A 235 74.30 c.66.1.7 66661 1twdA 256 74.42 c.1.30.1 107397 1qguB 519 75.45 c.92.2.3 35626 2qgyA 391 75.53 2oyrA 258 75.54 c.66.1.55 149078 3i6eA 385 76.91 2gdqA 382 77.22 c.1.11.2,d.54.1.1 135020,135021 1nrwA 288 77.24 c.108.1.10 86128 1l2tA 235 77.81 c.37.1.12 73514 2oz8A 389 77.88 2hneA 436 78.92 1wmdA 434 79.62 b.18.1.20,c.41.1.1 109408,109409 1h7wA 1025 80.68 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1liiA 363 82.04 c.72.1.1 73921 1b0lA 691 82.46 c.94.1.2,c.94.1.2 35847,35848 1mdlA 359 83.03 c.1.11.2,d.54.1.1 29247,38891 2pceA 386 84.61 2zc8A 369 85.03 2vwsA 267 85.77 3ic5A 118 86.51 2yweA 600 87.36 2gl5A 410 88.04 c.1.11.2,d.54.1.1 135336,135337 3dfhA 394 88.05 2ovlA 371 89.82