# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ys7A 233 3.93e-13 a.4.6.1,c.23.1.1 123961,123962 1w25A 459 5.54e-13 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3gt7A 154 5.55e-13 3dgfC 122 1.17e-12 3cfyA 137 1.42e-12 3gl9A 122 1.61e-12 1kgsA 225 1.70e-12 a.4.6.1,c.23.1.1 68596,68597 2jbaA 127 1.78e-12 1s8nA 205 2.60e-12 c.23.1.1 105374 3cg4A 142 2.63e-12 3crnA 132 2.87e-12 1qkkA 155 3.02e-12 c.23.1.1 31104 1yioA 208 3.05e-12 a.4.6.2,c.23.1.1 123326,123327 2zwmA 130 3.09e-12 2zayA 147 3.10e-12 1l5zA 155 3.42e-12 c.23.1.1 77722 1zh2A 121 3.95e-12 c.23.1.1 125069 3khtA 144 3.95e-12 3c3mA 138 4.34e-12 2qzjA 136 4.71e-12 2pl1A 121 5.58e-12 c.23.1.1 149610 3cnbA 143 6.06e-12 1zesA 125 6.21e-12 c.23.1.1 124994 3grcA 140 6.54e-12 1u8tA 129 6.54e-12 c.23.1.1 113192 2vuhB 139 7.30e-12 1ab6A 125 7.39e-12 c.23.1.1 31054 3f6pA 120 7.40e-12 1zgzA 122 7.70e-12 c.23.1.1 125065 3h1gA 129 8.16e-12 3lteA 132 8.27e-12 1mvoA 136 8.42e-12 c.23.1.1 79513 3hv2A 153 8.71e-12 1ab5A 125 9.71e-12 c.23.1.1 31056 1dcfA 136 9.73e-12 c.23.1.2 31124 2jk1A 139 1.05e-11 1mb3A 124 1.15e-11 c.23.1.1 78907 1dbwA 126 1.17e-11 c.23.1.1 31095 3h5iA 140 1.35e-11 1xhfA 123 1.37e-11 c.23.1.1 122003 3gwgA 129 1.38e-11 3h1fA 129 1.46e-11 3lufA 259 1.55e-11 1p2fA 220 1.64e-11 a.4.6.1,c.23.1.1 87720,87721 1dc7A 124 1.64e-11 c.23.1.1 31093 3hdgA 137 1.66e-11 1e6mA 128 1.70e-11 c.23.1.1 31039 2a9oA 120 1.75e-11 c.23.1.1 126444 3breA 358 1.85e-11 2rjnA 154 1.99e-11 1k68A 140 2.01e-11 c.23.1.1 90943 3i5aA 334 2.13e-11 1jbeA 128 2.16e-11 c.23.1.1 62845 3a10A 116 2.23e-11 1b00A 127 2.25e-11 c.23.1.1 31122 3cz5A 153 2.44e-11 3jteA 143 2.57e-11 3kcnA 151 2.80e-11 3chy 128 3.02e-11 3f6cA 134 3.05e-11 1i3cA 149 3.25e-11 c.23.1.1 71112 2qxyA 142 3.25e-11 1a04A 215 3.45e-11 a.4.6.2,c.23.1.1 16234,31089 2qr3A 140 3.54e-11 1k66A 149 3.60e-11 c.23.1.1 90941 3luaA 140 3.78e-11 1tmyA 120 3.81e-11 c.23.1.1 31083 2r25B 133 4.13e-11 c.23.1.1 151530 1srrA 124 4.24e-11 c.23.1.1 31110 3b2nA 133 4.34e-11 3eulA 152 4.44e-11 2gkgA 127 4.55e-11 3hdvA 136 5.05e-11 3hzhA 157 5.74e-11 2oqrA 230 6.06e-11 3hebA 152 6.55e-11 1oxkB 134 7.14e-11 c.23.1.1 93691 1u0sY 118 7.32e-11 c.23.1.1 107566 3i42A 127 9.14e-11 2qvgA 143 1.05e-10 3ktoA 136 1.54e-10 1a2oA 349 1.76e-10 c.23.1.1,c.40.1.1 31120,32479 2plnA 137 2.25e-10 3cu5A 141 2.25e-10 1dz3A 130 3.22e-10 c.23.1.1 31105 2qv0A 143 3.32e-10 3cg0A 140 6.19e-10 3c97A 140 1.08e-09 3eqzA 135 1.22e-09 3ilhA 146 2.01e-09 2b4aA 138 2.28e-09 c.23.1.1 127817 2rdmA 132 3.00e-09 3eodA 130 9.28e-09 3kyjB 145 1.69e-08 2qsjA 154 1.01e-07 3kloA 225 1.03e-07 1qo0D 196 1.70e-07 c.23.1.3 31125 3cloA 258 1.61e-05 2ch4A 320 0.001672 b.40.7.1,d.122.1.3 130447,130448 1mu5A 471 0.05635 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1b3qA 379 0.7918 a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 3gbgA 276 1.414 3memA 457 4.896 2yxeA 215 5.744 1h5yA 253 6.117 c.1.2.1 65638 1wl8A 189 7.392 c.23.16.1 120997 1bqg 451 8.010 1qdlB 195 8.938 c.23.16.1 31437 1bqgA 451 8.988 c.1.11.2,d.54.1.1 29217,38861 1thfD 253 9.829 c.1.2.1 28535 1ccwA 137 10.10 c.23.6.1 31238 2gjlA 328 10.64 2a0nA 265 11.39 c.1.2.1 125961 3lhdA 253 13.47 2yxbA 161 13.48 2tpsA 227 14.55 c.1.3.1 28591 2vycA 755 14.69 1y80A 210 15.15 1yxyA 234 16.62 c.1.2.5 124203 1o1yA 239 17.14 c.23.16.1 86554 3kyiB 145 17.71 1dl5A 317 18.94 c.66.1.7,d.197.1.1 64720,64721 1xm3A 264 19.42 c.1.31.1 115461 1i1qB 192 19.67 c.23.16.1 61544 3iivA 263 20.09 1vh7A 265 21.41 c.1.2.1 100646 1ec7A 446 21.56 c.1.11.2,d.54.1.1 29218,38862 1sqgA 429 22.50 a.79.1.3,c.66.1.38 105912,105913 1jg1A 235 24.03 c.66.1.7 66661 3iioA 262 24.90 3mb5A 255 25.02 2og9A 393 26.21 1y0eA 223 27.50 c.1.2.5 116297 3kp1A 763 28.03 1jdfA 447 30.93 c.1.11.2,d.54.1.1 62897,62898 3iipA 256 34.95 3aekA 437 37.13 1wznA 252 37.54 c.66.1.43 121525 1sjdA 368 37.99 c.1.11.2,d.54.1.1 105632,105633 2xdqA 460 39.62 1i7qB 193 40.57 c.23.16.1 61902 1vl0A 292 44.47 c.2.1.2 108704 3igsA 232 45.52 1twdA 256 46.00 c.1.30.1 107397 1hslA 238 46.43 c.94.1.1 35804 1jjeA 222 48.04 d.157.1.1 63117 3dfhA 394 48.08 1xrsB 262 49.81 c.23.6.1,d.230.4.1 115884,115885 1wy7A 207 50.71 c.66.1.32 121433 3mkcA 394 51.49 3c3pA 210 53.73 3cniA 156 53.84 3eeyA 197 54.05 2nyuA 196 55.60 2yvlA 248 57.73 1zx0A 236 58.33 c.66.1.16 125757 1lst 239 59.04 1wv2A 265 59.61 c.1.31.1 114910 3mqtA 394 61.13 1jjtA 228 62.74 d.157.1.1 63139 3gjyA 317 66.58 1r0mA 375 67.73 c.1.11.2,d.54.1.1 104747,104748 3c3yA 237 68.55 1mucA 373 70.17 c.1.11.2,d.54.1.1 29236,38880 2pwyA 258 71.10 1g8aA 227 72.27 c.66.1.3 90506 3gy1A 408 78.40 1wmdA 434 79.91 b.18.1.20,c.41.1.1 109408,109409 2qddA 378 81.13 1nt2A 210 81.80 c.66.1.3 86149 2qdeA 397 83.23 2i2xB 258 83.64 1mdlA 359 84.40 c.1.11.2,d.54.1.1 29247,38891 2oz8A 389 85.10 1wueA 386 86.38 c.1.11.2,d.54.1.1 114892,114893 1pii 452 86.59 2gdqA 382 87.94 c.1.11.2,d.54.1.1 135020,135021 2b25A 336 89.82 c.66.1.13 127699