# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ys7A	233	2.13e-11	a.4.6.1,c.23.1.1	123961,123962
3gt7A	154	2.14e-11		
1w25A	459	2.21e-11	c.23.1.1,c.23.1.1,d.58.29.2	114090,114091,114092
3cfyA	137	3.01e-11		
3gl9A	122	3.92e-11		
3cg4A	142	4.08e-11		
3dgfC	122	4.17e-11		
2zwmA	130	4.26e-11		
1s8nA	205	4.39e-11	c.23.1.1	105374
3crnA	132	5.00e-11		
3c3mA	138	5.03e-11		
1kgsA	225	5.69e-11	a.4.6.1,c.23.1.1	68596,68597
3lufA	259	5.85e-11		
2jbaA	127	6.42e-11		
2zayA	147	6.77e-11		
1zh2A	121	7.57e-11	c.23.1.1	125069
3grcA	140	7.69e-11		
2qzjA	136	7.84e-11		
1l5zA	155	8.32e-11	c.23.1.1	77722
1qkkA	155	9.56e-11	c.23.1.1	31104
3cnbA	143	9.93e-11		
2pl1A	121	1.01e-10	c.23.1.1	149610
3khtA	144	1.06e-10		
1yioA	208	1.26e-10	a.4.6.2,c.23.1.1	123326,123327
3h1gA	129	1.36e-10		
1mvoA	136	1.43e-10	c.23.1.1	79513
1zesA	125	1.45e-10	c.23.1.1	124994
1dcfA	136	1.51e-10	c.23.1.2	31124
3f6pA	120	1.72e-10		
3hv2A	153	1.82e-10		
1u8tA	129	1.87e-10	c.23.1.1	113192
1ab5A	125	1.97e-10	c.23.1.1	31056
1e6mA	128	2.14e-10	c.23.1.1	31039
3h5iA	140	2.18e-10		
3lteA	132	2.25e-10		
3gwgA	129	2.28e-10		
1ab6A	125	2.36e-10	c.23.1.1	31054
3h1fA	129	2.43e-10		
1mb3A	124	2.58e-10	c.23.1.1	78907
2qr3A	140	2.67e-10		
3i5aA	334	2.71e-10		
1jbeA	128	2.71e-10	c.23.1.1	62845
2gkgA	127	2.90e-10		
2qxyA	142	3.01e-10		
2vuhB	139	3.10e-10		
1dbwA	126	3.17e-10	c.23.1.1	31095
1a04A	215	3.27e-10	a.4.6.2,c.23.1.1	16234,31089
1b00A	127	3.37e-10	c.23.1.1	31122
1p2fA	220	3.54e-10	a.4.6.1,c.23.1.1	87720,87721
3luaA	140	4.13e-10		
1zgzA	122	4.28e-10	c.23.1.1	125065
1dc7A	124	4.30e-10	c.23.1.1	31093
2jk1A	139	4.36e-10		
3hdgA	137	4.71e-10		
2oqrA	230	4.72e-10		
3a10A	116	4.75e-10		
3cz5A	153	4.81e-10		
1tmyA	120	4.81e-10	c.23.1.1	31083
2a9oA	120	5.08e-10	c.23.1.1	126444
1xhfA	123	5.10e-10	c.23.1.1	122003
1srrA	124	5.43e-10	c.23.1.1	31110
1k68A	140	5.94e-10	c.23.1.1	90943
3chy	128	6.34e-10		
3f6cA	134	6.39e-10		
3breA	358	6.90e-10		
3jteA	143	6.91e-10		
3eulA	152	7.13e-10		
3kcnA	151	7.59e-10		
2rjnA	154	7.69e-10		
3hzhA	157	8.82e-10		
3b2nA	133	8.85e-10		
1i3cA	149	8.92e-10	c.23.1.1	71112
3hebA	152	1.12e-09		
3ktoA	136	1.12e-09		
1u0sY	118	1.14e-09	c.23.1.1	107566
1k66A	149	1.32e-09	c.23.1.1	90941
3i42A	127	1.58e-09		
3hdvA	136	1.60e-09		
1a2oA	349	1.92e-09	c.23.1.1,c.40.1.1	31120,32479
1oxkB	134	2.18e-09	c.23.1.1	93691
3c97A	140	2.60e-09		
2r25B	133	2.60e-09	c.23.1.1	151530
2plnA	137	2.98e-09		
2qvgA	143	3.19e-09		
3cg0A	140	4.39e-09		
3cu5A	141	5.14e-09		
2qv0A	143	5.43e-09		
1dz3A	130	5.75e-09	c.23.1.1	31105
3eqzA	135	9.04e-09		
2b4aA	138	1.36e-08	c.23.1.1	127817
3ilhA	146	2.13e-08		
2rdmA	132	2.73e-08		
3eodA	130	5.96e-08		
3kyjB	145	6.12e-08		
3kloA	225	4.78e-07		
2qsjA	154	6.98e-07		
1qo0D	196	9.13e-07	c.23.1.3	31125
3cloA	258	5.81e-05		
2ch4A	320	0.001201	b.40.7.1,d.122.1.3	130447,130448
1mu5A	471	0.3410	a.156.1.3,d.14.1.3,d.122.1.2	79472,79473,79474
1b3qA	379	0.9606	a.30.2.1,b.40.7.1,d.122.1.3	16993,25454,41112
1bqg	451	2.845		
1qdlB	195	3.410	c.23.16.1	31437
1bqgA	451	3.521	c.1.11.2,d.54.1.1	29217,38861
1ec7A	446	3.663	c.1.11.2,d.54.1.1	29218,38862
1gpmA	525	3.882	c.23.16.1,c.26.2.1,d.52.2.1	31405,31608,38826
1jdfA	447	3.887	c.1.11.2,d.54.1.1	62897,62898
1xm3A	264	4.923	c.1.31.1	115461
2tpsA	227	5.190	c.1.3.1	28591
1h5yA	253	5.241	c.1.2.1	65638
1cs0B	382	6.476	c.8.3.1,c.23.16.1	30740,31417
3memA	457	6.505		
1wl8A	189	6.956	c.23.16.1	120997
1sqgA	429	7.292	a.79.1.3,c.66.1.38	105912,105913
1c3oB	382	7.935	c.8.3.1,c.23.16.1	30744,31421
2vycA	755	8.646		
3kp1A	763	9.849		
1jjeA	222	10.06	d.157.1.1	63117
2i2xB	258	10.08		
1wv2A	265	10.34	c.1.31.1	114910
1dl5A	317	10.66	c.66.1.7,d.197.1.1	64720,64721
3kyiB	145	11.91		
3gbgA	276	12.31		
1goxA	369	13.70	c.1.4.1	28607
3iipA	256	14.36		
3cniA	156	14.43		
1i1qB	192	14.96	c.23.16.1	61544
2z6iA	332	15.97		
2a0nA	265	16.65	c.1.2.1	125961
1kbjA	412	16.66	c.1.4.1	72280
3bw2A	369	16.74		
1ccwA	137	16.90	c.23.6.1	31238
3iivA	263	18.71		
3mznA	450	20.59		
2htmA	268	21.96		
3lhdA	253	22.47		
1g8aA	227	23.85	c.66.1.3	90506
1o1yA	239	23.99	c.23.16.1	86554
3iioA	262	25.41		
1a9xB	379	26.68	c.8.3.1,c.23.16.1	30732,31409
2og9A	393	27.26		
2qr6A	393	27.61		
1r0mA	375	27.77	c.1.11.2,d.54.1.1	104747,104748
1sjdA	368	27.99	c.1.11.2,d.54.1.1	105632,105633
1lst	239	28.39		
1thfD	253	28.80	c.1.2.1	28535
1wueA	386	29.48	c.1.11.2,d.54.1.1	114892,114893
1xi3A	215	29.94	c.1.3.1	109601
1g8sA	230	31.07	c.66.1.3	90507
3bdkA	386	31.36		
1y80A	210	31.64		
1c30B	382	33.23	c.8.3.1,c.23.16.1	30736,31413
1izcA	339	34.52	c.1.12.5	83838
1pii	452	34.64		
2qddA	378	35.40		
3mb5A	255	35.81		
1hslA	238	36.42	c.94.1.1	35804
2yxbA	161	36.68		
2pp3A	398	36.89		
1y0eA	223	36.96	c.1.2.5	116297
2yxeA	215	37.88		
1a53	247	38.90		
1jr1A	514	39.16	d.37.1.1,c.1.5.1	144358,63241
1tb3A	352	40.36	c.1.4.1	119205
2xdqA	460	43.30		
1gylA	369	44.92	c.1.4.1	28610
2rduA	387	45.58		
3iv6A	261	45.92		
1yxyA	234	46.13	c.1.2.5	124203
1qcwA	410	47.08	c.1.4.1	28622
1vh7A	265	48.14	c.1.2.1	100646
1r30A	369	50.82	c.1.28.1	96895
1geqA	248	51.19	c.1.2.4	28589
2oz8A	389	53.44		
2qe6A	274	54.53		
1nt2A	210	55.83	c.66.1.3	86149
3ekgA	404	56.10		
3i6eA	385	57.09		
1o54A	277	57.12	c.66.1.13	92482
1ep3A	311	57.87	c.1.4.1	28597
1i7qB	193	58.94	c.23.16.1	61902
2gdqA	382	59.90	c.1.11.2,d.54.1.1	135020,135021
2oo6A	409	61.71		
1yeyA	444	62.13	c.1.11.2,d.54.1.1	116664,116665
1k7yA	577	62.90	a.46.1.1,c.23.6.1,d.173.1.1	68272,68273,68274
1twdA	256	63.58	c.1.30.1	107397
3ct2A	382	64.20		
3gy1A	408	65.95		
1jg1A	235	66.79	c.66.1.7	66661
1jjtA	228	67.06	d.157.1.1	63139
3hl0A	353	67.32		
1m2xA	223	67.37	d.157.1.1	84764
3dgbA	382	68.11		
1yadA	221	69.18		
3go2A	409	69.63		
1ixkA	315	70.63	c.66.1.38	90716
1ii5A	233	70.65	c.94.1.1	62412
3i4kA	383	70.83		
2p8bA	369	73.71		
2basA	431	73.72	c.1.33.1,d.110.6.2	128244,128245
2ox4A	403	74.13		
3dfhA	394	75.48		
2cb1A	412	76.19		
1mucA	373	77.62	c.1.11.2,d.54.1.1	29236,38880
2nliA	368	77.89		
2qdeA	397	78.21		
1vl0A	292	78.38	c.2.1.2	108704
3eeyA	197	79.75		
1m2eA	135	80.77	c.23.1.5	78478
2pozA	392	83.10		
1vhcA	224	84.13	c.1.10.1	100661
3aekA	437	85.03		
2hxtA	441	89.58