# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ys7A 233 6.64e-10 a.4.6.1,c.23.1.1 123961,123962 3gl9A 122 6.91e-10 3cfyA 137 8.22e-10 1w25A 459 8.26e-10 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3gt7A 154 1.67e-09 3cg4A 142 1.81e-09 3f6pA 120 2.14e-09 3crnA 132 2.26e-09 2pl1A 121 2.29e-09 c.23.1.1 149610 3lteA 132 2.55e-09 1s8nA 205 3.07e-09 c.23.1.1 105374 3dgfC 122 3.69e-09 2qzjA 136 3.72e-09 1kgsA 225 4.26e-09 a.4.6.1,c.23.1.1 68596,68597 1zh2A 121 4.40e-09 c.23.1.1 125069 3c3mA 138 4.69e-09 1mb3A 124 4.99e-09 c.23.1.1 78907 1mvoA 136 5.17e-09 c.23.1.1 79513 3hdgA 137 5.47e-09 2jk1A 139 6.03e-09 1dbwA 126 7.25e-09 c.23.1.1 31095 1ab6A 125 7.95e-09 c.23.1.1 31054 3breA 358 8.29e-09 1xhfA 123 8.52e-09 c.23.1.1 122003 1yioA 208 9.33e-09 a.4.6.2,c.23.1.1 123326,123327 1zesA 125 9.91e-09 c.23.1.1 124994 3i5aA 334 1.19e-08 2zayA 147 1.24e-08 2vuhB 139 1.25e-08 1zgzA 122 1.25e-08 c.23.1.1 125065 3khtA 144 1.29e-08 2jbaA 127 1.31e-08 3hv2A 153 1.37e-08 3cnbA 143 1.42e-08 2a9oA 120 1.46e-08 c.23.1.1 126444 2zwmA 130 1.48e-08 3jteA 143 1.49e-08 2rjnA 154 1.70e-08 1l5zA 155 1.73e-08 c.23.1.1 77722 1b00A 127 1.78e-08 c.23.1.1 31122 3h5iA 140 2.00e-08 1u8tA 129 2.05e-08 c.23.1.1 113192 1i3cA 149 2.71e-08 c.23.1.1 71112 1srrA 124 2.77e-08 c.23.1.1 31110 1ab5A 125 3.21e-08 c.23.1.1 31056 1a04A 215 3.22e-08 a.4.6.2,c.23.1.1 16234,31089 3grcA 140 3.48e-08 1jbeA 128 3.51e-08 c.23.1.1 62845 1k68A 140 3.84e-08 c.23.1.1 90943 2qr3A 140 4.39e-08 1qkkA 155 4.65e-08 c.23.1.1 31104 1tmyA 120 5.54e-08 c.23.1.1 31083 3lufA 259 6.16e-08 3chy 128 7.50e-08 1u0sY 118 8.45e-08 c.23.1.1 107566 3hdvA 136 8.80e-08 3a10A 116 8.81e-08 3cz5A 153 8.92e-08 2qvgA 143 1.18e-07 3eulA 152 1.20e-07 3gwgA 129 1.26e-07 3h1gA 129 1.35e-07 1k66A 149 1.49e-07 c.23.1.1 90941 3hzhA 157 1.55e-07 1e6mA 128 1.60e-07 c.23.1.1 31039 2qxyA 142 1.69e-07 1p2fA 220 1.89e-07 a.4.6.1,c.23.1.1 87720,87721 3h1fA 129 2.79e-07 3hebA 152 3.04e-07 3b2nA 133 3.76e-07 2oqrA 230 4.54e-07 3kcnA 151 5.31e-07 2r25B 133 5.36e-07 c.23.1.1 151530 3cu5A 141 5.49e-07 3i42A 127 6.10e-07 1oxkB 134 7.60e-07 c.23.1.1 93691 3cg0A 140 8.14e-07 2gkgA 127 8.22e-07 1a2oA 349 9.29e-07 c.23.1.1,c.40.1.1 31120,32479 3f6cA 134 9.42e-07 3ktoA 136 1.06e-06 2rdmA 132 1.14e-06 2qv0A 143 2.67e-06 1dz3A 130 3.31e-06 c.23.1.1 31105 3eodA 130 3.45e-06 2plnA 137 3.60e-06 3luaA 140 4.39e-06 1dcfA 136 4.77e-06 c.23.1.2 31124 3ilhA 146 5.83e-06 2b4aA 138 1.13e-05 c.23.1.1 127817 1dc7A 124 1.36e-05 c.23.1.1 31093 3c97A 140 5.09e-05 2qsjA 154 0.000126 3eqzA 135 0.000201 3kyjB 145 0.000438 3kloA 225 0.001979 1qo0D 196 0.01794 c.23.1.3 31125 1ccwA 137 0.1036 c.23.6.1 31238 2yxbA 161 0.1347 3kp1A 763 0.3073 2vycA 755 0.5367 1y80A 210 1.036 1m2eA 135 1.973 c.23.1.5 78478 3kyiB 145 2.045 1wv2A 265 3.375 c.1.31.1 114910 2c3zA 222 4.664 2c4wA 176 6.198 1xm3A 264 6.343 c.1.31.1 115461 5reqA 727 6.876 c.1.19.1,c.23.6.1 29632,31259 1xrsB 262 8.107 c.23.6.1,d.230.4.1 115884,115885 1k7yA 577 8.714 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 1lst 239 9.459 2d00A 109 9.835 c.149.1.1 146441 2oz8A 389 10.51 1r30A 369 12.73 c.1.28.1 96895 1reqA 727 12.79 c.1.19.1,c.23.6.1 29620,31247 1kbjA 412 12.86 c.1.4.1 72280 1yxyA 234 12.88 c.1.2.5 124203 3dliA 240 13.47 1db3A 372 15.05 c.2.1.2 29813 3ks6A 250 16.05 1hslA 238 18.52 c.94.1.1 35804 3hv1A 268 18.96 1be1 137 19.45 1vl0A 292 19.53 c.2.1.2 108704 3bw2A 369 19.60 1d0iA 156 20.20 c.23.13.1 31383 1a53 247 21.81 3mznA 450 21.81 2j5bA 348 22.61 2glxA 332 22.63 1qwgA 251 22.66 c.1.27.1 96473 1bqgA 451 22.97 c.1.11.2,d.54.1.1 29217,38861 2z4sA 440 23.24 3fz9A 112 23.94 2tpsA 227 24.30 c.1.3.1 28591 1tqxA 227 25.10 c.1.2.2 112614 3iv6A 261 26.51 1izcA 339 26.64 c.1.12.5 83838 1dv1A 449 27.03 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1gqoA 143 27.52 c.23.13.1 76295 1yqgA 263 27.69 a.100.1.10,c.2.1.6 145920,145921 1yadA 221 28.01 1vlwA 217 28.42 c.1.10.1 108868 1l6wA 220 29.79 c.1.10.1 73632 1o1xA 155 29.83 c.121.1.1 86553 1igs 248 30.53 3ciwA 348 30.91 1bncA 449 32.12 b.84.2.1,c.30.1.1,d.142.1.2 28236,31643,41488 1uslA 170 32.27 c.121.1.1 99871 1lstA 239 32.68 c.94.1.1 35755 1bqg 451 33.11 2vvpA 162 33.31 c.121.1.1 153645 2pyyA 228 33.44 1w0mA 226 33.59 c.1.1.1 109027 3exrA 221 33.67 1ec7A 446 33.73 c.1.11.2,d.54.1.1 29218,38862 2nx9A 464 33.76 1lnqA 336 34.25 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1suwA 249 34.42 e.52.1.1 106027 3lwzA 153 35.08 1vhcA 224 35.48 c.1.10.1 100661 4ts1A 319 36.01 c.26.1.1 31565 1wq3A 322 36.53 2xdqA 460 36.75 2liv 344 37.86 1hg3A 225 38.17 c.1.1.1 61025 1dxeA 256 38.86 c.1.12.5 29310 3i45A 387 40.30 1dpeA 507 40.30 c.94.1.1 35799 1psdA 409 40.96 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1i1qB 192 41.22 c.23.16.1 61544 2e7jA 371 42.20 c.67.1.9 146704 3iixA 348 43.83 2htmA 268 45.50 2qe6A 274 46.73 3h2sA 224 48.19 3cumA 302 48.43 a.100.1.1,c.2.1.6 156995,156996 2v25A 259 50.94 1lsuA 147 51.19 c.2.1.9 74250 1ho1A 242 52.65 c.1.24.1 61097 3fucA 284 52.81 1ii5A 233 53.00 c.94.1.1 62412 1bmtA 246 53.15 a.46.1.1,c.23.6.1 17757,31235 1uxoA 192 54.17 c.69.1.31 108121 2vwsA 267 54.26 1xt8A 292 54.86 c.94.1.1 122293 3hojA 248 54.91 3hceA 289 54.93 3ckyA 301 55.04 3b5vA 248 56.75 1y0eA 223 57.37 c.1.2.5 116297 1nrzA 164 59.24 c.38.1.1 86131 3hutA 358 59.31 2o6lA 170 59.77 2guyA 478 60.65 b.71.1.1,c.1.8.1 135754,135755 1i4nA 251 62.35 c.1.2.4 71114 2f02A 323 65.63 c.72.1.1 132649 1iow 306 66.31 3h7mA 234 67.40 2gdqA 382 67.86 c.1.11.2,d.54.1.1 135020,135021 2v5jA 287 67.97 2aaa 484 68.34 2v03A 303 69.15 3c85A 183 69.19 2cybA 323 70.94 1a53A 247 71.04 c.1.2.4 28564 2v82A 212 71.49 3hnrA 220 71.82 2qddA 378 73.63 3g13A 169 74.01 1wl8A 189 74.35 c.23.16.1 120997 3d02A 303 75.60 2jgnA 185 76.59 1n2sA 299 77.46 c.2.1.2 79857 1nrwA 288 77.59 c.108.1.10 86128 1dv2A 452 77.96 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1ao3A 187 78.10 c.62.1.1 34134 3brqA 296 78.22 2hcfA 234 79.66 c.108.1.6 136333 2zc8A 369 80.10 2ggsA 273 80.34 1rqbA 539 80.37 a.5.7.2,c.1.10.5 105057,105058 2abqA 306 80.63 c.72.1.1 126528 3cqdA 309 80.64 2nooA 502 80.87 1tb3A 352 81.10 c.1.4.1 119205 2ywxA 157 81.33 2q82A 129 81.44 3h5lA 419 81.49 3e7pA 270 82.23 2hmvA 144 82.34 c.2.1.9 136615 1scuA 288 82.65 c.2.1.8,c.23.4.1 30307,31135 1vc4A 254 82.67 c.1.2.4 100557 1bsvA 321 83.87 c.2.1.2 29809 3fniA 159 83.95 1vm6A 228 84.48 d.81.1.3,c.2.1.3 108877,118631 3llvA 141 84.53 3igsA 232 84.53 2b78A 385 84.53 b.122.1.9,c.66.1.51 128025,128026 2wqpA 349 85.62 3he8A 149 85.75 1lhpA 312 86.59 c.72.1.5 77960 2obfA 289 86.90 3dfuA 232 87.01 1r6uA 437 87.30 c.26.1.1 97163 2rdxA 379 87.30 2c6uA 122 89.28 1sxjA 511 89.38 a.80.1.1,c.37.1.20 106081,106082 3i6eA 385 89.79