# List of top-scoring protein chains for T0634.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2zwmA 130 1.44e-12 1mvoA 136 1.89e-12 c.23.1.1 79513 3f6pA 120 1.94e-12 2a9oA 120 5.90e-12 c.23.1.1 126444 1b00A 127 6.57e-12 c.23.1.1 31122 1zesA 125 7.02e-12 c.23.1.1 124994 2jb9A 127 3.28e-11 2jbaB 127 3.48e-11 2jbaA 127 3.50e-11 1kgsA 225 4.32e-11 a.4.6.1,c.23.1.1 68596,68597 2oqrA 230 5.82e-11 1ys7A 233 6.44e-11 a.4.6.1,c.23.1.1 123961,123962 2gwrA 238 1.80e-10 1zh2A 121 2.15e-10 c.23.1.1 125069 2wb4A 459 2.38e-10 1w25A 459 2.54e-10 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3dgfC 122 2.97e-10 3gl9A 122 4.24e-10 1xhfA 123 4.51e-10 c.23.1.1 122003 2pl1A 121 4.53e-10 c.23.1.1 149610 3gt7A 154 5.28e-10 1dc7A 124 2.52e-09 c.23.1.1 31093 3c3mA 138 2.70e-09 3fgzA 128 3.13e-09 3f7nA 128 3.19e-09 3fftA 128 4.20e-09 2ayzA 133 5.10e-09 c.23.1.1 127577 2ayxA 254 5.11e-09 c.23.1.1,c.23.1.6 127574,127575 3eq2A 394 5.61e-09 1mb3A 124 5.63e-09 c.23.1.1 78907 3h1gA 129 5.78e-09 3ffxA 128 5.96e-09 1zgzA 122 6.16e-09 c.23.1.1 125065 3ffwA 128 6.44e-09 1ab6A 125 6.88e-09 c.23.1.1 31054 2chyA 128 7.71e-09 c.23.1.1 31081 1ab5A 125 7.97e-09 c.23.1.1 31056 3a0uA 116 8.49e-09 3a10A 116 8.51e-09 2fmkA 129 8.54e-09 c.23.1.1 133777 2chfA 128 8.56e-09 c.23.1.1 31079 3gwgA 129 9.37e-09 2jvjA 132 9.97e-09 1srrA 124 1.05e-08 c.23.1.1 31110 1natA 124 1.12e-08 c.23.1.1 31113 2jvkA 132 1.14e-08 1ymvA 129 1.15e-08 c.23.1.1 31045 1d4zA 128 1.19e-08 c.23.1.1 31047 1kmiY 129 1.20e-08 c.23.1.1 72751 1jbeA 128 1.21e-08 c.23.1.1 62845 1cyeA 129 1.21e-08 c.23.1.1 31077 1mihA 129 1.33e-08 c.23.1.1 84975 1f51E 119 1.34e-08 c.23.1.1 31114 3cg4A 142 1.39e-08 2jviA 132 1.57e-08 1ymuA 130 1.58e-08 c.23.1.1 31066 2ftkE 124 2.29e-08 c.23.1.1 134069 5chyA 128 2.31e-08 c.23.1.1 31050 1udrA 129 2.32e-08 c.23.1.1 31041 1p2fA 220 2.41e-08 a.4.6.1,c.23.1.1 87720,87721 3crnA 132 2.73e-08 1zdmA 129 2.74e-08 c.23.1.1 124941 1c4wA 128 2.75e-08 c.23.1.1 31046 3h1fA 129 2.91e-08 1e6kA 130 2.92e-08 c.23.1.1 59306 1ehcA 128 3.27e-08 c.23.1.1 31053 1zy2A 150 3.28e-08 c.23.1.1 125811 1e6lA 127 3.69e-08 c.23.1.1 59307 3breA 358 4.07e-08 1e6mA 128 4.12e-08 c.23.1.1 31039 3jteA 143 4.94e-08 3i5aA 334 5.08e-08 2qzjA 136 5.54e-08 1s8nA 205 5.75e-08 c.23.1.1 105374 1u8tA 128 6.34e-08 c.23.1.1 113192 1zitA 121 6.58e-08 3eodA 130 6.88e-08 1yioA 208 7.34e-08 a.4.6.2,c.23.1.1 123326,123327 1tmyA 120 7.95e-08 c.23.1.1 31083 1vlzA 128 8.17e-08 c.23.1.1 31048 1u0sY 118 9.14e-08 c.23.1.1 107566 1p6qA 129 9.42e-08 c.23.1.1 104074 3cfyA 137 1.05e-07 1heyA 128 1.28e-07 c.23.1.1 31061 1l5zA 155 1.48e-07 c.23.1.1 77722 1qkkA 155 1.52e-07 c.23.1.1 31104 1dz3A 130 1.53e-07 c.23.1.1 31105 6chyA 128 1.73e-07 c.23.1.1 31062 3lteA 132 1.87e-07 2id7A 128 2.01e-07 3hdgA 137 2.08e-07 1a04A 215 2.19e-07 a.4.6.2,c.23.1.1 16234,31089 1ny5A 387 3.37e-07 c.23.1.1,c.37.1.20 92317,92318 2id9A 128 4.33e-07 1dbwA 126 4.85e-07 c.23.1.1 31095 3cz5A 153 5.35e-07 3cu5A 141 6.90e-07 2zayA 147 7.95e-07 3c97A 140 9.88e-07 3cnbA 143 1.14e-06 1k68A 140 1.27e-06 c.23.1.1 90943 2jk1A 139 1.35e-06 2r25B 133 1.47e-06 c.23.1.1 151530 1oxkB 134 1.63e-06 c.23.1.1 93691 1k66A 149 1.69e-06 c.23.1.1 90941 1i3cA 149 1.69e-06 c.23.1.1 71112 1jlkA 147 1.74e-06 c.23.1.1 71727 2qxyA 142 2.34e-06 2vuhB 139 2.96e-06 3lufA 259 3.31e-06 3kcnA 151 3.66e-06 3hdvA 136 4.10e-06 3grcA 140 4.31e-06 3khtA 144 4.91e-06 3h5iA 140 4.92e-06 3dzdA 368 8.92e-06 3b2nA 133 9.03e-06 2gkgA 127 9.31e-06 2nt4A 127 9.48e-06 1a2oA 349 9.79e-06 c.23.1.1,c.40.1.1 31120,32479 3cg0A 140 1.15e-05 3hebA 152 1.43e-05 3eulA 152 1.43e-05 3hzhA 157 1.79e-05 3c3wA 225 2.14e-05 3hv2A 153 2.24e-05 2qr3A 140 2.89e-05 2nt3A 127 3.84e-05 3i42A 127 4.24e-05 2qv0A 143 4.38e-05 2qsjA 154 4.69e-05 2rjnA 154 4.97e-05 2qvgA 143 5.59e-05 3f6cA 134 5.64e-05 3kyjB 145 6.97e-05 3kyiB 145 0.000131 3luaA 140 0.000147 3cwoX 237 0.000163 3eqzA 135 0.000286 2plnA 137 0.000436 2hqrA 223 0.000515 2hqoA 123 0.000623 2rdmA 132 0.002440 1dcfA 136 0.002867 c.23.1.2 31124 3ilhA 146 0.002956 2j48A 119 0.004170 2b4aA 138 0.008715 c.23.1.1 127817 3ktoA 136 0.03035 3hx8A 129 41.61 3lgaA 253 44.35 3mb5A 255 47.01 2mobA 138 55.32 d.137.1.1 41453 1texA 287 56.96 c.37.1.5 106818 3ez7A 398 60.02 3giuA 215 61.86 3ez2A 398 64.68 3d48R 211 70.75 b.1.2.1,b.1.2.1 157289,157290 1bp3B 211 73.18 b.1.2.1,b.1.2.1 22031,22032 2w7qA 204 85.98