# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 3.21e-13 3cg4A 142 5.35e-13 1kgsA 225 5.73e-13 a.4.6.1,c.23.1.1 68596,68597 3breA 358 6.18e-13 2oqrA 230 7.13e-13 1yioA 208 8.00e-13 a.4.6.2,c.23.1.1 123326,123327 3cfyA 137 8.59e-13 3c3mA 138 9.79e-13 1qkkA 155 1.10e-12 c.23.1.1 31104 3gl9A 122 1.13e-12 3dgfC 122 1.16e-12 3cnbA 143 1.17e-12 1ys7A 233 1.19e-12 a.4.6.1,c.23.1.1 123961,123962 3i5aA 334 1.26e-12 3crnA 132 1.33e-12 2zwmA 130 1.40e-12 2zayA 147 1.58e-12 2rjnA 154 1.62e-12 3hv2A 153 1.78e-12 3lufA 259 1.83e-12 3f6pA 120 1.88e-12 1xhfA 123 1.88e-12 c.23.1.1 122003 3hdgA 137 2.12e-12 1a04A 215 2.13e-12 a.4.6.2,c.23.1.1 16234,31089 2jbaA 127 2.30e-12 2qzjA 136 2.40e-12 1zh2A 121 2.51e-12 c.23.1.1 125069 1dbwA 126 2.57e-12 c.23.1.1 31095 1srrA 124 2.72e-12 c.23.1.1 31110 3lteA 132 2.84e-12 1zgzA 122 2.84e-12 c.23.1.1 125065 2vuhB 139 3.04e-12 1s8nA 205 3.10e-12 c.23.1.1 105374 1mvoA 136 3.41e-12 c.23.1.1 79513 1b00A 127 3.60e-12 c.23.1.1 31122 2jk1A 139 3.62e-12 3grcA 140 3.78e-12 2pl1A 121 3.92e-12 c.23.1.1 149610 2a9oA 120 3.98e-12 c.23.1.1 126444 3jteA 143 4.91e-12 3khtA 144 4.95e-12 3h1gA 129 6.22e-12 3f6cA 134 6.31e-12 3gwgA 129 6.44e-12 1u8tA 129 7.43e-12 c.23.1.1 113192 2qxyA 142 7.55e-12 1jbeA 128 7.70e-12 c.23.1.1 62845 3h1fA 129 7.87e-12 3kcnA 151 9.71e-12 3cz5A 153 1.01e-11 3hebA 152 1.07e-11 1mb3A 124 1.26e-11 c.23.1.1 78907 1tmyA 120 1.31e-11 c.23.1.1 31083 3b2nA 133 1.53e-11 3a10A 116 1.74e-11 3cg0A 140 1.74e-11 1u0sY 118 2.06e-11 c.23.1.1 107566 3h5iA 140 2.09e-11 3eqzA 135 2.12e-11 1dz3A 130 2.58e-11 c.23.1.1 31105 1k66A 149 2.59e-11 c.23.1.1 90941 3hzhA 157 2.80e-11 1i3cA 149 3.27e-11 c.23.1.1 71112 1dcfA 136 3.34e-11 c.23.1.2 31124 3eulA 152 3.42e-11 3i42A 127 3.45e-11 2qv0A 143 3.65e-11 2r25B 133 3.84e-11 c.23.1.1 151530 3luaA 140 3.97e-11 3cu5A 141 4.77e-11 1p2fA 220 5.20e-11 a.4.6.1,c.23.1.1 87720,87721 3hdvA 136 5.40e-11 2qvgA 143 6.21e-11 1oxkB 134 8.06e-11 c.23.1.1 93691 3ktoA 136 1.01e-10 3c97A 140 1.02e-10 3ilhA 146 1.21e-10 2plnA 137 1.34e-10 2gkgA 127 1.37e-10 3eodA 130 1.52e-10 2rdmA 132 3.13e-10 2qsjA 154 4.11e-10 2qr3A 140 5.37e-10 3kyjB 145 1.58e-09 3kloA 225 9.51e-09 1qo0D 196 3.00e-06 c.23.1.3 31125 3kyiB 145 1.42e-05 2b4aA 138 1.51e-05 c.23.1.1 127817 2q0oA 236 0.004200 3gbgA 276 0.01015 2ch4A 320 0.09381 b.40.7.1,d.122.1.3 130447,130448 1xm3A 264 0.2772 c.1.31.1 115461 2fliA 220 0.3049 c.1.2.2 133714 1wv2A 265 0.4644 c.1.31.1 114910 2htmA 268 0.5945 2opjA 327 1.124 3mznA 450 1.975 1bqgA 451 2.108 c.1.11.2,d.54.1.1 29217,38861 1ec7A 446 2.594 c.1.11.2,d.54.1.1 29218,38862 1tqjA 230 4.126 c.1.2.2 107228 3cloA 258 4.157 3ekgA 404 6.383 2ps2A 371 6.441 1g67A 225 6.946 c.1.3.1 60311 2hneA 436 7.106 3igsA 232 7.183 1r0mA 375 7.809 c.1.11.2,d.54.1.1 104747,104748 2tpsA 227 7.832 c.1.3.1 28591 2qr6A 393 7.981 2qgyA 391 8.576 3dg6A 367 8.739 3h12A 397 10.08 2yxbA 161 10.09 1sjdA 368 10.15 c.1.11.2,d.54.1.1 105632,105633 2oqhA 385 10.19 1reqA 727 10.51 c.1.19.1,c.23.6.1 29620,31247 1a53 247 10.51 1p0kA 349 10.85 c.1.4.1 87648 1tkkA 366 10.89 c.1.11.2,d.54.1.1 107089,107090 2oz3A 404 11.27 3mkcA 394 12.26 3fv9A 386 12.34 2gjlA 328 12.51 2hxtA 441 12.56 1xrsB 262 12.59 c.23.6.1,d.230.4.1 115884,115885 1y80A 210 12.69 1mucA 373 12.81 c.1.11.2,d.54.1.1 29236,38880 3m6wA 464 13.01 3iipA 256 13.60 2pp3A 398 13.71 1bmtA 246 13.87 a.46.1.1,c.23.6.1 17757,31235 2nqlA 388 14.17 3bw2A 369 14.28 1wbhA 214 14.33 c.1.10.1 120845 2ox4A 403 14.51 1vc4A 254 14.75 c.1.2.4 100557 2og9A 393 14.90 1y0eA 223 14.98 c.1.2.5 116297 2aeeA 211 15.06 c.61.1.1 126620 2v82A 212 16.07 2p0iA 456 16.19 3fcpA 381 16.43 2qdeA 397 16.57 2px0A 296 16.95 1nu5A 370 16.95 c.1.11.2,d.54.1.1 92183,92184 1zd1A 284 17.14 2oktA 342 17.37 1tqxA 227 17.45 c.1.2.2 112614 3bjsA 428 17.63 3dgbA 382 18.04 3ct2A 382 19.11 3jy6A 276 19.36 1vhcA 224 19.67 c.1.10.1 100661 3fxgA 455 19.73 3ceuA 210 20.05 3memA 457 20.97 1nsjA 205 21.12 c.1.2.4 28560 1rvkA 382 21.28 c.1.11.2,d.54.1.1 97928,97929 3iusA 286 21.57 2ovlA 371 21.86 2gl5A 410 22.21 c.1.11.2,d.54.1.1 135336,135337 1thfD 253 22.51 c.1.2.1 28535 2qjjA 402 22.92 1h1yA 228 23.07 c.1.2.2 76506 2pozA 392 23.09 2f6uA 234 24.08 c.1.4.1 133061 3mqtA 394 25.04 2podA 410 25.46 3iivA 263 25.47 2pgwA 384 26.18 3brqA 296 27.08 3d8uA 275 27.45 1nsj 205 27.78 2h8zA 359 28.98 1piiA 452 29.42 c.1.2.4,c.1.2.4 28559,28563 3n4eA 393 29.69 3gy1A 408 29.81 1mdlA 359 30.01 c.1.11.2,d.54.1.1 29247,38891 1jq5A 370 30.32 e.22.1.2 67084 3kp1A 763 30.58 2d1zA 436 30.81 2p8bA 369 31.03 3b89A 252 31.19 3i4kA 383 32.14 2i2xB 258 32.69 1rd5A 262 33.21 c.1.2.4 111772 3a9iA 376 33.42 1lstA 239 35.30 c.94.1.1 35755 2r6oA 294 36.59 3ij5A 211 36.63 3dfhA 394 36.95 1qopA 268 37.62 c.1.2.4 28570 2wjgA 188 38.24 3boxA 415 39.21 1ep3A 311 39.24 c.1.4.1 28597 1mdl 359 39.46 3bppA 230 39.62 3i6eA 385 39.83 2o56A 407 40.86 1z41A 338 41.26 c.1.4.1 124421 2d0bA 310 41.46 3h7vA 330 41.72 2djlA 314 41.77 2pyyA 228 41.81 2wnsA 205 41.91 3es7A 391 42.37 1jubA 311 42.99 c.1.4.1 90908 1lst 239 43.04 3i6bA 180 43.26 2wjjA 168 43.39 3m3hA 234 43.74 2a0nA 265 44.12 c.1.2.1 125961 2hzgA 401 44.48 3hcwA 295 44.73 1tb3A 352 45.44 c.1.4.1 119205 2pceA 386 46.84 3m4xA 456 47.20 2pvuA 272 47.48 2rdxA 379 47.56 3fyyA 391 47.94 3gr7A 340 48.04 1nvmA 345 48.77 a.5.7.1,c.1.10.5 86249,86250 3ik4A 365 48.91 2afbA 351 49.19 c.72.1.1 126674 3kruA 343 49.54 1wa3A 205 49.89 c.1.10.1 120802 3i6vA 232 49.96 3hgjA 349 50.46 1twdA 256 50.58 c.1.30.1 107397 1a53A 247 50.85 c.1.2.4 28564 1mxsA 225 52.39 c.1.10.1 91494 3l65A 363 52.86 2xdqB 511 53.66 2i7dA 193 53.67 1pii 452 54.24 1kbjA 412 54.85 c.1.4.1 72280 2r8eA 188 55.20 3iioA 262 55.82 2pmqA 377 58.06 2oz8A 389 59.57 3l68A 363 59.60 3e3mA 355 61.56 2gdqA 382 63.42 c.1.11.2,d.54.1.1 135020,135021 1wueA 386 64.30 c.1.11.2,d.54.1.1 114892,114893 2v5jA 287 64.32 3l5lA 363 64.55 2h9aA 445 65.19 3lopA 364 65.36 2zptX 295 65.70 2oqyA 391 65.92 3mn1A 189 67.89 1in4A 334 68.24 a.4.5.11,c.37.1.20 62597,62598 3f4wA 211 70.90 2r5nA 669 70.98 c.36.1.6,c.36.1.10,c.48.1.1 151591,151592,151593 3g41A 246 72.52 1yeyA 444 72.84 c.1.11.2,d.54.1.1 116664,116665 2pfsA 150 72.96 3h5tA 366 74.10 3gd6A 391 75.18 2nq2C 253 75.26 3ib0A 345 75.46 2zc8A 369 76.29 3h5vA 394 76.62 2qddA 378 77.68 2oo6A 409 78.06 3ctpA 330 78.18 1bifA 469 78.47 c.37.1.7,c.60.1.4 31961,34003 3fz9A 112 78.60 2qdsA 227 79.02 d.157.1.1 150672 1ccwA 137 79.02 c.23.6.1 31238 2ejbA 189 79.30 3a1sA 258 80.19 1goxA 369 80.27 c.1.4.1 28607 3b5vA 248 80.59 1ta9A 450 81.19 3labA 217 81.75 3mtiA 185 81.83 1wl8A 189 82.72 c.23.16.1 120997 3a1dA 287 82.98 3fvdA 378 83.03 2p3zA 415 84.47 1ii7A 333 85.17 d.159.1.4 62415 1t5iA 172 86.67 c.37.1.19 106450 2ia4A 287 86.85 1oroA 213 87.89 c.61.1.1 34093 2yzkA 178 88.21 3hl0A 353 89.61