# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 7.71e-15 1kgsA 225 1.15e-14 a.4.6.1,c.23.1.1 68596,68597 2oqrA 230 1.49e-14 3c3mA 138 1.50e-14 3cg4A 142 1.85e-14 1yioA 208 1.90e-14 a.4.6.2,c.23.1.1 123326,123327 1ys7A 233 2.32e-14 a.4.6.1,c.23.1.1 123961,123962 2zwmA 130 2.72e-14 3dgfC 122 2.73e-14 3breA 358 2.94e-14 3gl9A 122 3.33e-14 3cnbA 143 3.73e-14 3f6pA 120 4.51e-14 2zayA 147 4.94e-14 3cfyA 137 4.96e-14 1mvoA 136 5.22e-14 c.23.1.1 79513 1dbwA 126 5.33e-14 c.23.1.1 31095 1qkkA 155 5.59e-14 c.23.1.1 31104 3i5aA 334 5.68e-14 3hdgA 137 6.95e-14 3lufA 259 6.97e-14 1s8nA 205 6.98e-14 c.23.1.1 105374 1a04A 215 7.79e-14 a.4.6.2,c.23.1.1 16234,31089 1xhfA 123 7.88e-14 c.23.1.1 122003 2jbaA 127 8.57e-14 3crnA 132 8.74e-14 1zh2A 121 8.90e-14 c.23.1.1 125069 1b00A 127 9.59e-14 c.23.1.1 31122 2rjnA 154 9.66e-14 2qzjA 136 9.72e-14 1zgzA 122 1.02e-13 c.23.1.1 125065 3lteA 132 1.06e-13 2pl1A 121 1.11e-13 c.23.1.1 149610 2jk1A 139 1.16e-13 3hv2A 153 1.17e-13 3grcA 140 1.18e-13 2a9oA 120 1.24e-13 c.23.1.1 126444 1srrA 124 1.31e-13 c.23.1.1 31110 1u8tA 129 1.56e-13 c.23.1.1 113192 2vuhB 139 1.63e-13 3f6cA 134 1.63e-13 2qxyA 142 1.85e-13 3jteA 143 1.91e-13 3khtA 144 1.93e-13 1mb3A 124 2.27e-13 c.23.1.1 78907 1jbeA 128 2.52e-13 c.23.1.1 62845 3gwgA 129 2.56e-13 3h1gA 129 2.57e-13 3h1fA 129 3.00e-13 3kcnA 151 5.33e-13 3cz5A 153 5.49e-13 3eqzA 135 5.61e-13 3a10A 116 5.75e-13 1dz3A 130 5.92e-13 c.23.1.1 31105 1tmyA 120 6.08e-13 c.23.1.1 31083 1i3cA 149 6.30e-13 c.23.1.1 71112 3b2nA 133 6.42e-13 3hebA 152 6.73e-13 1p2fA 220 6.91e-13 a.4.6.1,c.23.1.1 87720,87721 2r25B 133 8.11e-13 c.23.1.1 151530 3eulA 152 9.00e-13 3h5iA 140 1.03e-12 3hzhA 157 1.12e-12 1u0sY 118 1.16e-12 c.23.1.1 107566 1k66A 149 1.41e-12 c.23.1.1 90941 3cg0A 140 1.56e-12 2qv0A 143 1.74e-12 3i42A 127 1.75e-12 1dcfA 136 1.81e-12 c.23.1.2 31124 3hdvA 136 2.14e-12 3c97A 140 2.28e-12 2qvgA 143 2.48e-12 2plnA 137 2.79e-12 1oxkB 134 2.79e-12 c.23.1.1 93691 3ktoA 136 2.89e-12 3luaA 140 3.00e-12 3cu5A 141 3.17e-12 2gkgA 127 4.46e-12 3ilhA 146 4.63e-12 3eodA 130 6.49e-12 2qsjA 154 1.79e-11 2rdmA 132 1.86e-11 2qr3A 140 2.03e-11 3kyjB 145 7.53e-11 3kloA 225 4.97e-10 1qo0D 196 6.38e-07 c.23.1.3 31125 3kyiB 145 2.87e-06 2b4aA 138 5.81e-06 c.23.1.1 127817 2q0oA 236 0.000334 3gbgA 276 0.000675 2ch4A 320 0.007494 b.40.7.1,d.122.1.3 130447,130448 2fliA 220 0.1039 c.1.2.2 133714 1wv2A 265 0.1115 c.1.31.1 114910 2htmA 268 0.2065 1xm3A 264 0.3328 c.1.31.1 115461 3cloA 258 0.8997 1ec7A 446 1.016 c.1.11.2,d.54.1.1 29218,38862 3mznA 450 1.058 1bqgA 451 1.069 c.1.11.2,d.54.1.1 29217,38861 2opjA 327 1.209 1y0eA 223 1.356 c.1.2.5 116297 1tqjA 230 1.865 c.1.2.2 107228 1a53A 247 1.920 c.1.2.4 28564 3memA 457 2.363 3f4wA 211 2.638 3iipA 256 2.664 2ps2A 371 3.002 3iivA 263 3.263 2a0nA 265 3.277 c.1.2.1 125961 1q6oA 216 3.286 c.1.2.3 95986 2gjlA 328 3.452 3b5vA 248 3.475 1thfD 253 3.807 c.1.2.1 28535 3ekgA 404 3.940 2oktA 342 3.992 1qopA 268 4.048 c.1.2.4 28570 1a53 247 4.062 1sjdA 368 4.118 c.1.11.2,d.54.1.1 105632,105633 3iioA 262 4.132 1vc4A 254 4.276 c.1.2.4 100557 3dg6A 367 4.446 2og9A 393 4.745 1xbyA 216 5.133 c.1.2.3 121846 3hojA 248 5.202 2tpsA 227 5.242 c.1.3.1 28591 3h12A 397 5.251 3jy6A 276 5.743 2hneA 436 5.932 3bw2A 369 5.941 1r0mA 375 6.103 c.1.11.2,d.54.1.1 104747,104748 3fv9A 386 6.160 1tkkA 366 6.345 c.1.11.2,d.54.1.1 107089,107090 2oz3A 404 6.466 2v82A 212 6.913 3h7vA 330 7.012 1p0kA 349 7.138 c.1.4.1 87648 2hxtA 441 7.302 3fcpA 381 7.344 1g67A 225 7.509 c.1.3.1 60311 2qdeA 397 7.579 3igsA 232 7.638 1h5yA 253 7.935 c.1.2.1 65638 1yeyA 444 8.008 c.1.11.2,d.54.1.1 116664,116665 1tqxA 227 8.179 c.1.2.2 112614 1nsjA 205 8.512 c.1.2.4 28560 3mkcA 394 8.682 1mucA 373 8.808 c.1.11.2,d.54.1.1 29236,38880 2qr6A 393 8.989 2ovlA 371 9.446 3i4kA 383 9.489 2yxbA 161 9.642 1ep3A 311 10.32 c.1.4.1 28597 3m6wA 464 10.38 2z6iA 332 10.56 3ceuA 210 10.81 1kczA 413 11.25 c.1.11.2,d.54.1.1 68451,68452 2oqhA 385 11.26 2nqlA 388 11.64 2pp3A 398 11.92 1nsj 205 12.09 1xrsB 262 12.17 c.23.6.1,d.230.4.1 115884,115885 1pii 452 12.22 2qgyA 391 12.45 3brqA 296 12.75 2dzxA 248 14.28 2ox4A 403 14.30 3mqtA 394 14.55 2pgwA 384 14.93 3gy1A 408 15.27 2dztA 248 15.38 1nu5A 370 15.84 c.1.11.2,d.54.1.1 92183,92184 3ik4A 365 15.99 1piiA 452 16.07 c.1.2.4,c.1.2.4 28559,28563 2p8bA 369 16.40 2wjgA 188 16.68 2zadA 345 16.90 3ct2A 382 17.30 1mdlA 359 17.50 c.1.11.2,d.54.1.1 29247,38891 1geqA 248 17.57 c.1.2.4 28589 3bjsA 428 17.67 1bmtA 246 18.04 a.46.1.1,c.23.6.1 17757,31235 3boxA 415 19.33 3dgbA 382 19.37 1vzwA 244 19.45 c.1.2.1 120553 1h1yA 228 19.51 c.1.2.2 76506 3i6eA 385 19.64 2hzgA 401 19.84 2oz8A 389 20.05 3e3mA 355 20.08 2oztA 332 21.51 2pceA 386 21.51 1reqA 727 22.24 c.1.19.1,c.23.6.1 29620,31247 3fxgA 455 22.67 3n4eA 393 22.80 1wbhA 214 23.47 c.1.10.1 120845 1rd5A 262 23.48 c.1.2.4 111772 2pozA 392 23.86 1yxyA 234 24.11 c.1.2.5 124203 1mdl 359 24.85 1nvmA 345 25.37 a.5.7.1,c.1.10.5 86249,86250 2wjjA 168 25.37 2djlA 314 25.80 3ic5A 118 25.86 2rdxA 379 26.21 3h5tA 366 26.41 2o56A 407 26.69 2aeeA 211 27.08 c.61.1.1 126620 1twdA 256 27.26 c.1.30.1 107397 3kp1A 763 27.58 3d8uA 275 28.09 3dfhA 394 28.17 3hcwA 295 28.99 3bppA 230 29.73 1y80A 210 30.30 2p0iA 456 31.08 1wa3A 205 31.34 c.1.10.1 120802 2jgnA 185 31.44 2h8zA 359 31.57 1i7qB 193 32.08 c.23.16.1 61902 2qjjA 402 32.29 1vhcA 224 33.33 c.1.10.1 100661 3f8dA 323 34.76 3bblA 287 34.99 1rvkA 382 35.21 c.1.11.2,d.54.1.1 97928,97929 8abpA 306 35.46 c.93.1.1 35647 2gl5A 410 35.79 c.1.11.2,d.54.1.1 135336,135337 1zfjA 491 36.10 d.37.1.1,c.1.5.1 144739,28638 2px0A 296 36.13 1m6yA 301 36.28 a.60.13.1,c.66.1.23 78716,78717 3mtiA 185 36.58 2d1zA 436 36.99 3hgjA 349 37.15 2oo6A 409 37.28 3a1sA 258 37.50 1o0yA 260 37.96 c.1.10.1 80756 3e58A 214 38.20 2xdqB 511 38.53 1wueA 386 38.95 c.1.11.2,d.54.1.1 114892,114893 3a1dA 287 39.05 1jubA 311 39.69 c.1.4.1 90908 2zc8A 369 39.82 2qddA 378 40.30 3a9iA 376 40.54 2pmqA 377 40.69 3m4xA 456 40.71 3l68A 363 40.89 1zd1A 284 41.54 1z41A 338 41.65 c.1.4.1 124421 3iusA 286 41.95 2qdsA 227 41.96 d.157.1.1 150672 3es7A 391 42.16 3ij5A 211 42.68 2r6oA 294 43.34 2oqyA 391 44.05 3fvdA 378 44.73 2d0bA 310 45.06 3k4hA 292 45.52 3l65A 363 45.57 1wl8A 189 46.04 c.23.16.1 120997 3fz9A 112 46.32 2wicA 267 46.68 2gdqA 382 47.08 c.1.11.2,d.54.1.1 135020,135021 2podA 410 47.57 1lstA 239 48.42 c.94.1.1 35755 2pibA 216 49.40 3gr7A 340 51.51 2nliA 368 51.98 1in4A 334 52.39 a.4.5.11,c.37.1.20 62597,62598 3eywA 413 52.89 1tb3A 352 53.49 c.1.4.1 119205 2ejbA 189 53.67 3lopA 364 54.34 3kruA 343 55.05 2hhgA 139 55.08 3l5lA 363 55.35 2w43A 201 55.46 3bp8A 406 56.60 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2r5nA 669 56.72 c.36.1.6,c.36.1.10,c.48.1.1 151591,151592,151593 2q0xA 335 57.40 3ctpA 330 57.54 1jq5A 370 57.83 e.22.1.2 67084 1a7tA 232 58.94 d.157.1.1 42041 3fyyA 391 59.04 1kfcA 268 59.17 c.1.2.4 77371 3mtkA 178 61.88 3mn1A 189 62.21 3ajdA 274 62.32 3cq9A 227 62.77 2i2xB 258 63.51 1rw1A 114 63.71 c.47.1.12 111945 1v7cA 351 65.12 c.79.1.1 100446 1kte 105 66.32 3hs3A 277 66.33 3lncA 231 67.59 2f6uA 234 68.66 c.1.4.1 133061 1tq4A 413 69.59 c.37.1.8 107201 1s3cA 141 69.89 2r8eA 188 70.20 2pyyA 228 70.69 2nv1A 305 70.84 2zbwA 335 71.01 2fepA 289 71.55 2g4rA 160 72.05 2v5jA 287 72.56 1v9sA 208 73.37 c.61.1.1 119894 2pfsA 150 73.56 1kteA 105 75.01 c.47.1.1 32771 2whgA 230 75.69 2wnsA 205 76.21 2wjhA 166 76.36 2zz3A 252 77.44 2du2A 374 79.10 2i4iA 417 79.46 1kbjA 412 79.55 c.1.4.1 72280 1jftA 340 80.27 a.35.1.5,c.93.1.1 66652,66653 2p3zA 415 80.43 1ujpA 271 80.71 c.1.2.4 99462 1tzzA 392 80.91 c.1.11.2,d.54.1.1 112896,112897 3gd6A 391 81.41 2vk2A 306 83.60 1yl5A 247 84.10 c.2.1.3,d.81.1.3 123617,123618 3giyA 380 84.85 3f0iA 119 85.56 3a1eA 287 85.78 2rjoA 332 85.87 2i7dA 193 87.23 1ve5A 311 88.33 c.79.1.1 120013