# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 9.37e-15 1kgsA 225 1.40e-14 a.4.6.1,c.23.1.1 68596,68597 2oqrA 230 1.65e-14 3c3mA 138 1.76e-14 3cg4A 142 2.03e-14 1yioA 208 2.40e-14 a.4.6.2,c.23.1.1 123326,123327 1ys7A 233 3.41e-14 a.4.6.1,c.23.1.1 123961,123962 3dgfC 122 3.62e-14 2zwmA 130 3.70e-14 3gl9A 122 3.92e-14 3breA 358 4.53e-14 3cnbA 143 4.70e-14 3f6pA 120 5.70e-14 2zayA 147 6.48e-14 1qkkA 155 7.22e-14 c.23.1.1 31104 3cfyA 137 8.32e-14 3i5aA 334 8.86e-14 1dbwA 126 8.88e-14 c.23.1.1 31095 1mvoA 136 8.91e-14 c.23.1.1 79513 3hdgA 137 9.35e-14 3lufA 259 9.83e-14 1a04A 215 9.99e-14 a.4.6.2,c.23.1.1 16234,31089 2jbaA 127 1.01e-13 3crnA 132 1.02e-13 1s8nA 205 1.03e-13 c.23.1.1 105374 1zh2A 121 1.09e-13 c.23.1.1 125069 1xhfA 123 1.12e-13 c.23.1.1 122003 1b00A 127 1.15e-13 c.23.1.1 31122 2qzjA 136 1.15e-13 3grcA 140 1.26e-13 3lteA 132 1.32e-13 1zgzA 122 1.35e-13 c.23.1.1 125065 1srrA 124 1.46e-13 c.23.1.1 31110 2jk1A 139 1.52e-13 2rjnA 154 1.55e-13 2pl1A 121 1.56e-13 c.23.1.1 149610 3hv2A 153 1.60e-13 2a9oA 120 1.80e-13 c.23.1.1 126444 1u8tA 129 2.11e-13 c.23.1.1 113192 2qxyA 142 2.27e-13 2vuhB 139 2.29e-13 3jteA 143 2.38e-13 3f6cA 134 2.71e-13 3khtA 144 2.78e-13 3gwgA 129 3.38e-13 1mb3A 124 3.39e-13 c.23.1.1 78907 3h1gA 129 3.42e-13 1jbeA 128 3.52e-13 c.23.1.1 62845 3h1fA 129 4.03e-13 3a10A 116 7.02e-13 3kcnA 151 7.12e-13 3eqzA 135 7.27e-13 1tmyA 120 7.74e-13 c.23.1.1 31083 3hebA 152 8.02e-13 3cz5A 153 8.06e-13 1p2fA 220 8.38e-13 a.4.6.1,c.23.1.1 87720,87721 1dz3A 130 8.44e-13 c.23.1.1 31105 3b2nA 133 8.86e-13 2r25B 133 1.00e-12 c.23.1.1 151530 1i3cA 149 1.14e-12 c.23.1.1 71112 3eulA 152 1.26e-12 3h5iA 140 1.38e-12 3hzhA 157 1.50e-12 1u0sY 118 1.57e-12 c.23.1.1 107566 1k66A 149 1.77e-12 c.23.1.1 90941 3cg0A 140 1.85e-12 3i42A 127 2.06e-12 1dcfA 136 2.29e-12 c.23.1.2 31124 3hdvA 136 2.45e-12 2qv0A 143 2.50e-12 2qvgA 143 2.88e-12 1oxkB 134 3.16e-12 c.23.1.1 93691 3c97A 140 3.36e-12 3luaA 140 3.57e-12 2plnA 137 3.59e-12 3cu5A 141 3.73e-12 3ktoA 136 3.75e-12 3ilhA 146 4.66e-12 2gkgA 127 8.04e-12 3eodA 130 8.46e-12 2qsjA 154 2.41e-11 2rdmA 132 2.66e-11 2qr3A 140 3.02e-11 3kyjB 145 1.06e-10 3kloA 225 4.79e-10 1qo0D 196 9.23e-07 c.23.1.3 31125 3kyiB 145 3.53e-06 2b4aA 138 6.52e-06 c.23.1.1 127817 2q0oA 236 0.000457 3gbgA 276 0.000543 2ch4A 320 0.005947 b.40.7.1,d.122.1.3 130447,130448 2fliA 220 0.1459 c.1.2.2 133714 1wv2A 265 0.1942 c.1.31.1 114910 2htmA 268 0.3436 1xm3A 264 0.6514 c.1.31.1 115461 1ec7A 446 0.9060 c.1.11.2,d.54.1.1 29218,38862 1bqgA 451 0.9713 c.1.11.2,d.54.1.1 29217,38861 3cloA 258 1.015 3mznA 450 1.028 3memA 457 1.232 2opjA 327 1.857 1y0eA 223 2.669 c.1.2.5 116297 1tqjA 230 2.862 c.1.2.2 107228 1a53A 247 3.339 c.1.2.4 28564 3f4wA 211 4.082 2ps2A 371 4.129 3iipA 256 4.459 2oktA 342 5.299 3b5vA 248 5.397 3jy6A 276 5.508 3ekgA 404 5.576 1q6oA 216 5.856 c.1.2.3 95986 3dg6A 367 5.914 1a53 247 6.122 2a0nA 265 6.177 c.1.2.1 125961 2gjlA 328 6.339 3iivA 263 6.415 1qopA 268 6.725 c.1.2.4 28570 2og9A 393 6.862 3h12A 397 6.938 1r0mA 375 7.188 c.1.11.2,d.54.1.1 104747,104748 1sjdA 368 7.203 c.1.11.2,d.54.1.1 105632,105633 3iioA 262 7.281 1thfD 253 7.559 c.1.2.1 28535 1vc4A 254 7.809 c.1.2.4 100557 2oz3A 404 8.149 2hneA 436 8.361 1tqxA 227 8.368 c.1.2.2 112614 3fv9A 386 8.420 3hojA 248 8.822 1tkkA 366 8.977 c.1.11.2,d.54.1.1 107089,107090 1xbyA 216 9.011 c.1.2.3 121846 2hxtA 441 9.225 3fcpA 381 9.343 2tpsA 227 10.17 c.1.3.1 28591 3igsA 232 10.34 1nsjA 205 10.51 c.1.2.4 28560 3h7vA 330 10.60 1mucA 373 10.74 c.1.11.2,d.54.1.1 29236,38880 3bw2A 369 10.74 2qdeA 397 10.86 1yeyA 444 11.47 c.1.11.2,d.54.1.1 116664,116665 1p0kA 349 11.54 c.1.4.1 87648 3mkcA 394 11.56 2nqlA 388 11.82 1pii 452 11.91 2oqhA 385 11.95 3brqA 296 12.15 3m6wA 464 12.41 2v82A 212 12.42 2qr6A 393 12.83 2ovlA 371 12.93 1g67A 225 13.22 c.1.3.1 60311 1h5yA 253 13.43 c.1.2.1 65638 3i4kA 383 14.17 3ceuA 210 14.72 1ep3A 311 14.92 c.1.4.1 28597 2z6iA 332 15.05 1kczA 413 15.16 c.1.11.2,d.54.1.1 68451,68452 2ox4A 403 15.24 1piiA 452 16.18 c.1.2.4,c.1.2.4 28559,28563 2qgyA 391 16.57 1h1yA 228 16.90 c.1.2.2 76506 1rd5A 262 18.52 c.1.2.4 111772 1xrsB 262 18.69 c.23.6.1,d.230.4.1 115884,115885 3ct2A 382 18.96 3bjsA 428 19.01 1nsj 205 19.22 3ik4A 365 19.29 3fxgA 455 19.47 2yxbA 161 19.85 2pp3A 398 20.45 3mqtA 394 20.55 1nu5A 370 21.31 c.1.11.2,d.54.1.1 92183,92184 3dgbA 382 21.42 1mdlA 359 21.45 c.1.11.2,d.54.1.1 29247,38891 2wjgA 188 21.65 3e3mA 355 21.69 2hzgA 401 21.75 3gy1A 408 22.06 2pgwA 384 22.15 2p8bA 369 22.76 2jgnA 185 23.24 3boxA 415 23.61 2pozA 392 23.94 3bppA 230 23.99 3i6eA 385 24.24 2zadA 345 24.71 3h5tA 366 24.96 1o0yA 260 25.22 c.1.10.1 80756 2p0iA 456 26.25 2dztA 248 26.55 2djlA 314 27.97 2wjjA 168 28.84 1nvmA 345 29.08 a.5.7.1,c.1.10.5 86249,86250 3bblA 287 30.35 2aeeA 211 30.59 c.61.1.1 126620 1mdl 359 30.62 1vzwA 244 31.08 c.1.2.1 120553 3d8uA 275 31.29 2rdxA 379 32.05 1wbhA 214 32.37 c.1.10.1 120845 2o56A 407 32.51 2pceA 386 32.90 2oztA 332 33.15 2dzxA 248 33.48 3n4eA 393 34.11 1geqA 248 34.84 c.1.2.4 28589 1bmtA 246 35.11 a.46.1.1,c.23.6.1 17757,31235 3a9iA 376 35.23 2d1zA 436 35.40 3ic5A 118 35.52 3hcwA 295 36.24 3iusA 286 37.16 3dfhA 394 37.33 3a1sA 258 37.34 2oz8A 389 38.00 1wa3A 205 39.81 c.1.10.1 120802 2w43A 201 39.95 3bp8A 406 40.29 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1wueA 386 41.33 c.1.11.2,d.54.1.1 114892,114893 1wl8A 189 41.77 c.23.16.1 120997 1jubA 311 41.88 c.1.4.1 90908 2wicA 267 42.17 1twdA 256 42.20 c.1.30.1 107397 3e58A 214 43.05 2qjjA 402 43.10 1reqA 727 43.92 c.1.19.1,c.23.6.1 29620,31247 1vhcA 224 44.12 c.1.10.1 100661 2d0bA 310 44.44 2zc8A 369 44.45 2qdsA 227 46.07 d.157.1.1 150672 2qddA 378 46.43 3k4hA 292 46.54 2px0A 296 46.81 2pibA 216 47.08 3f8dA 323 48.25 3m4xA 456 48.62 3mtkA 178 49.15 3ij5A 211 49.39 2podA 410 49.83 3kp1A 763 49.84 1zd1A 284 49.85 8abpA 306 50.08 c.93.1.1 35647 1m6yA 301 51.41 a.60.13.1,c.66.1.23 78716,78717 3mtiA 185 51.45 1y80A 210 52.78 2xdqB 511 54.23 1rw1A 114 54.58 c.47.1.12 111945 3a1dA 287 55.45 1in4A 334 55.47 a.4.5.11,c.37.1.20 62597,62598 2oo6A 409 55.65 2pmqA 377 55.67 2q0xA 335 55.89 2gdqA 382 57.34 c.1.11.2,d.54.1.1 135020,135021 3fvdA 378 57.53 1yxyA 234 57.96 c.1.2.5 124203 1a7tA 232 58.00 d.157.1.1 42041 1s3cA 141 58.56 1rvkA 382 59.23 c.1.11.2,d.54.1.1 97928,97929 2gl5A 410 59.79 c.1.11.2,d.54.1.1 135336,135337 2i7dA 193 60.55 3mn1A 189 61.05 3ctpA 330 62.25 2h8zA 359 62.74 2r6oA 294 63.29 2fepA 289 63.67 2r5nA 669 64.15 c.36.1.6,c.36.1.10,c.48.1.1 151591,151592,151593 1z41A 338 64.21 c.1.4.1 124421 1tq4A 413 65.65 c.37.1.8 107201 3f0iA 119 66.24 2nliA 368 66.46 2oqyA 391 66.98 3lopA 364 68.02 1i7qB 193 70.66 c.23.16.1 61902 1t5iA 172 72.39 c.37.1.19 106450 2f6uA 234 72.65 c.1.4.1 133061 1jq5A 370 72.92 e.22.1.2 67084 1zfjA 491 75.27 d.37.1.1,c.1.5.1 144739,28638 3hs3A 277 76.98 3hgjA 349 78.07 2fcjA 119 78.31 c.136.1.1 133269 3l68A 363 81.02 2zz3A 252 82.29 1tb3A 352 82.46 c.1.4.1 119205 1yl5A 247 82.49 c.2.1.3,d.81.1.3 123617,123618 2ejbA 189 83.36 3gv0A 288 83.49 2p3zA 415 83.93 3fz9A 112 84.16 2i2xB 258 84.40 3fyyA 391 84.69 1r6wA 322 85.59 c.1.11.2,d.54.1.1 97165,97166 3fz4A 120 87.75 1kte 105 89.90