# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 1.09e-12 3breA 358 1.32e-12 3cg4A 142 1.80e-12 1yioA 208 2.05e-12 a.4.6.2,c.23.1.1 123326,123327 3cnbA 143 2.52e-12 2zwmA 130 2.57e-12 3crnA 132 2.87e-12 3dgfC 122 3.01e-12 3i5aA 334 3.27e-12 3f6pA 120 3.36e-12 3cfyA 137 3.39e-12 1xhfA 123 3.84e-12 c.23.1.1 122003 3gl9A 122 3.99e-12 3hdgA 137 5.17e-12 1dbwA 126 5.30e-12 c.23.1.1 31095 3grcA 140 5.65e-12 2qzjA 136 5.91e-12 1kgsA 225 6.43e-12 a.4.6.1,c.23.1.1 68596,68597 1qkkA 155 6.50e-12 c.23.1.1 31104 1zh2A 121 7.03e-12 c.23.1.1 125069 1zgzA 122 7.12e-12 c.23.1.1 125065 1ys7A 233 7.42e-12 a.4.6.1,c.23.1.1 123961,123962 1b00A 127 7.59e-12 c.23.1.1 31122 1a04A 215 7.78e-12 a.4.6.2,c.23.1.1 16234,31089 2vuhB 139 7.96e-12 2jk1A 139 8.14e-12 2zayA 147 8.21e-12 2a9oA 120 8.56e-12 c.23.1.1 126444 2rjnA 154 9.26e-12 1srrA 124 9.34e-12 c.23.1.1 31110 2jbaA 127 9.37e-12 3hv2A 153 9.45e-12 1mvoA 136 1.02e-11 c.23.1.1 79513 3jteA 143 1.09e-11 3c3mA 138 1.10e-11 3khtA 144 1.13e-11 1u8tA 129 1.37e-11 c.23.1.1 113192 2pl1A 121 1.52e-11 c.23.1.1 149610 3lteA 132 1.53e-11 2qxyA 142 1.61e-11 3h1fA 129 1.65e-11 1s8nA 205 1.69e-11 c.23.1.1 105374 3lufA 259 1.74e-11 1jbeA 128 1.77e-11 c.23.1.1 62845 3h1gA 129 1.85e-11 3gwgA 129 1.87e-11 1tmyA 120 2.19e-11 c.23.1.1 31083 3kcnA 151 3.20e-11 3h5iA 140 3.22e-11 3a10A 116 4.06e-11 1mb3A 124 4.09e-11 c.23.1.1 78907 3f6cA 134 4.40e-11 3b2nA 133 4.57e-11 1u0sY 118 4.59e-11 c.23.1.1 107566 3hebA 152 4.84e-11 1k66A 149 5.16e-11 c.23.1.1 90941 3cz5A 153 5.65e-11 3hzhA 157 5.89e-11 3luaA 140 5.95e-11 2oqrA 230 6.94e-11 3eqzA 135 7.49e-11 1i3cA 149 8.11e-11 c.23.1.1 71112 3eulA 152 9.20e-11 3ktoA 136 9.25e-11 2qv0A 143 1.16e-10 3i42A 127 1.44e-10 2r25B 133 1.58e-10 c.23.1.1 151530 1p2fA 220 1.73e-10 a.4.6.1,c.23.1.1 87720,87721 3hdvA 136 2.11e-10 1dcfA 136 2.28e-10 c.23.1.2 31124 2qvgA 143 2.40e-10 2plnA 137 3.21e-10 3cg0A 140 3.31e-10 1oxkB 134 3.49e-10 c.23.1.1 93691 3cu5A 141 4.27e-10 2rdmA 132 5.69e-10 3eodA 130 6.08e-10 1dz3A 130 6.51e-10 c.23.1.1 31105 2qsjA 154 7.71e-10 2gkgA 127 1.01e-09 2qr3A 140 1.04e-09 3ilhA 146 1.10e-09 3c97A 140 5.34e-09 3kyjB 145 7.02e-09 3kloA 225 1.31e-07 1qo0D 196 9.81e-06 c.23.1.3 31125 2b4aA 138 6.80e-05 c.23.1.1 127817 3kyiB 145 0.000169 2q0oA 236 0.01464 3gbgA 276 0.04110 2ch4A 320 0.2383 b.40.7.1,d.122.1.3 130447,130448 1wv2A 265 0.6719 c.1.31.1 114910 2fliA 220 0.8255 c.1.2.2 133714 3mznA 450 1.326 1ec7A 446 1.480 c.1.11.2,d.54.1.1 29218,38862 1bqgA 451 1.538 c.1.11.2,d.54.1.1 29217,38861 1xm3A 264 1.939 c.1.31.1 115461 3memA 457 3.068 2htmA 268 3.205 2yxbA 161 3.899 3cloA 258 4.338 2opjA 327 5.326 1vhcA 224 5.890 c.1.10.1 100661 1wbhA 214 5.931 c.1.10.1 120845 3igsA 232 7.979 3bw2A 369 8.129 1yeyA 444 8.412 c.1.11.2,d.54.1.1 116664,116665 3iipA 256 9.014 1h1yA 228 10.20 c.1.2.2 76506 1a53A 247 10.22 c.1.2.4 28564 1nu5A 370 10.89 c.1.11.2,d.54.1.1 92183,92184 2hneA 436 11.11 2og9A 393 11.72 1y80A 210 12.12 1g67A 225 12.46 c.1.3.1 60311 3iivA 263 12.82 1q92A 197 12.99 c.108.1.8 96250 1h5yA 253 13.56 c.1.2.1 65638 2tpsA 227 13.73 c.1.3.1 28591 1twdA 256 13.73 c.1.30.1 107397 2oqhA 385 14.80 2hxtA 441 14.97 1q6oA 216 15.79 c.1.2.3 95986 2pp3A 398 16.40 1i7qB 193 17.07 c.23.16.1 61902 3mkcA 394 17.12 3hojA 248 17.46 3i6eA 385 17.62 2pozA 392 17.71 3dgbA 382 17.82 3b5vA 248 18.89 1yxyA 234 18.97 c.1.2.5 124203 2f6uA 234 19.07 c.1.4.1 133061 1y0eA 223 20.20 c.1.2.5 116297 1vc4A 254 20.33 c.1.2.4 100557 1ep3A 311 21.00 c.1.4.1 28597 2qjjA 402 21.03 2i7dA 193 21.58 2v82A 212 22.03 3f4wA 211 22.28 2a0nA 265 22.40 c.1.2.1 125961 2qdeA 397 22.54 3kp1A 763 22.75 1mdlA 359 22.86 c.1.11.2,d.54.1.1 29247,38891 3ct2A 382 22.99 1thfD 253 23.15 c.1.2.1 28535 3h7vA 330 23.69 1qopA 268 24.55 c.1.2.4 28570 2dzxA 248 26.43 3fcpA 381 26.96 1mdl 359 27.10 1ccwA 137 27.16 c.23.6.1 31238 3bppA 230 27.26 2qgyA 391 28.78 3ceuA 210 29.32 3dfhA 394 29.71 1hslA 238 30.09 c.94.1.1 35804 2vycA 755 30.43 2px0A 296 30.45 2p0iA 456 31.38 1nvmA 345 31.71 a.5.7.1,c.1.10.5 86249,86250 1tkkA 366 32.82 c.1.11.2,d.54.1.1 107089,107090 1xbyA 216 33.22 c.1.2.3 121846 2p8bA 369 35.08 2djlA 314 35.30 1tqjA 230 35.49 c.1.2.2 107228 2ps2A 371 35.60 3brqA 296 36.17 3iioA 262 36.38 3e3mA 355 36.39 2nqlA 388 39.95 3lopA 364 41.39 2gjlA 328 41.75 3dg6A 367 42.69 1mucA 373 43.05 c.1.11.2,d.54.1.1 29236,38880 3mqtA 394 43.34 1sjdA 368 43.96 c.1.11.2,d.54.1.1 105632,105633 3hcwA 295 44.71 2pyyA 228 45.19 3fv9A 386 45.69 2i2xB 258 45.77 1lstA 239 46.47 c.94.1.1 35755 3a9iA 376 46.91 8abpA 306 47.13 c.93.1.1 35647 1o0yA 260 47.71 c.1.10.1 80756 1jubA 311 48.22 c.1.4.1 90908 1km3A 247 48.67 c.1.2.3 72739 1usgA 346 50.30 c.93.1.1 99864 3aekB 525 50.39 1xrsB 262 50.81 c.23.6.1,d.230.4.1 115884,115885 3bjsA 428 50.89 3delB 242 51.00 3hgjA 349 51.17 3d8uA 275 51.19 2h8zA 359 52.02 1ii5A 233 52.12 c.94.1.1 62412 3h5lA 419 52.21 3labA 217 54.49 2v25A 259 55.11 2pgwA 384 56.37 1z41A 338 56.86 c.1.4.1 124421 1p0kA 349 57.24 c.1.4.1 87648 1rd5A 262 57.31 c.1.2.4 111772 2q0xA 335 58.24 2dztA 248 58.94 2oz3A 404 59.94 3g1yA 228 60.36 3i6vA 232 60.82 2ox4A 403 60.96 2pvuA 272 61.11 1a53 247 61.73 3kbrA 239 63.01 3h5oA 339 64.08 2oktA 342 64.37 2qdsA 227 64.46 d.157.1.1 150672 2oz8A 389 64.61 3kruA 343 65.61 3n4eA 393 66.19 2jgnA 185 66.48 2qr6A 393 66.96 2ovlA 371 67.42 3m47A 228 68.00 2xdqB 511 68.47 1r0mA 375 70.67 c.1.11.2,d.54.1.1 104747,104748 1dpeA 507 70.99 c.94.1.1 35799 1t5iA 172 71.79 c.37.1.19 106450 2fepA 289 72.16 2h9aA 445 72.35 1rvkA 382 73.18 c.1.11.2,d.54.1.1 97928,97929 3gr7A 340 73.58 2hzgA 401 73.72 1mxsA 225 74.31 c.1.10.1 91494 3boxA 415 75.26 2nv1A 305 77.10 2fvyA 309 77.16 c.93.1.1 134227 1ii7A 333 77.16 d.159.1.4 62415 3gy1A 408 78.74 3fxgA 455 79.87 1wa3A 205 82.18 c.1.10.1 120802 2wqpA 349 82.23 1qdlB 195 82.47 c.23.16.1 31437 1jvnA 555 83.26 c.1.2.1,c.23.16.1 67355,67356 3gjyA 317 86.70 3g41A 246 86.96 3ik4A 365 88.13 2yw3A 207 88.27 1xuuA 349 88.93 b.85.1.1,c.1.10.6 116067,116068 2w43A 201 88.97