# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 1.37e-15 2oqrA 230 1.77e-15 1kgsA 225 1.79e-15 a.4.6.1,c.23.1.1 68596,68597 3cg4A 142 2.64e-15 1yioA 208 3.04e-15 a.4.6.2,c.23.1.1 123326,123327 3breA 358 3.06e-15 3gl9A 122 5.20e-15 1ys7A 233 5.34e-15 a.4.6.1,c.23.1.1 123961,123962 3cfyA 137 5.64e-15 3c3mA 138 5.65e-15 2zwmA 130 6.36e-15 3f6pA 120 6.52e-15 3cnbA 143 6.69e-15 3dgfC 122 7.22e-15 2zayA 147 7.30e-15 1qkkA 155 7.78e-15 c.23.1.1 31104 3crnA 132 8.10e-15 3lufA 259 8.91e-15 3hdgA 137 1.00e-14 2rjnA 154 1.01e-14 3i5aA 334 1.08e-14 1s8nA 205 1.21e-14 c.23.1.1 105374 1xhfA 123 1.25e-14 c.23.1.1 122003 1a04A 215 1.33e-14 a.4.6.2,c.23.1.1 16234,31089 2jbaA 127 1.35e-14 1zh2A 121 1.37e-14 c.23.1.1 125069 2qzjA 136 1.45e-14 1mvoA 136 1.53e-14 c.23.1.1 79513 3grcA 140 1.71e-14 3hv2A 153 1.71e-14 1dbwA 126 1.74e-14 c.23.1.1 31095 2vuhB 139 1.80e-14 2jk1A 139 1.83e-14 1zgzA 122 1.87e-14 c.23.1.1 125065 1b00A 127 1.95e-14 c.23.1.1 31122 1srrA 124 1.96e-14 c.23.1.1 31110 3jteA 143 2.10e-14 3lteA 132 2.23e-14 2a9oA 120 2.49e-14 c.23.1.1 126444 3f6cA 134 3.53e-14 2pl1A 121 3.75e-14 c.23.1.1 149610 3khtA 144 4.09e-14 3h1gA 129 5.46e-14 3gwgA 129 5.70e-14 3kcnA 151 6.17e-14 3h1fA 129 8.17e-14 1jbeA 128 8.26e-14 c.23.1.1 62845 3cz5A 153 8.93e-14 2qxyA 142 1.10e-13 3b2nA 133 1.18e-13 1u8tA 129 1.20e-13 c.23.1.1 113192 1dz3A 130 1.24e-13 c.23.1.1 31105 1mb3A 124 1.24e-13 c.23.1.1 78907 3a10A 116 1.31e-13 1tmyA 120 1.35e-13 c.23.1.1 31083 3eqzA 135 1.73e-13 3hzhA 157 1.94e-13 2r25B 133 2.03e-13 c.23.1.1 151530 3cg0A 140 2.04e-13 3h5iA 140 2.11e-13 3hebA 152 2.24e-13 2qv0A 143 2.61e-13 1i3cA 149 2.71e-13 c.23.1.1 71112 1u0sY 118 2.71e-13 c.23.1.1 107566 1k66A 149 2.91e-13 c.23.1.1 90941 1dcfA 136 3.40e-13 c.23.1.2 31124 3i42A 127 3.91e-13 3eulA 152 4.08e-13 3luaA 140 4.51e-13 3c97A 140 4.98e-13 3hdvA 136 5.81e-13 1oxkB 134 6.65e-13 c.23.1.1 93691 2qvgA 143 7.68e-13 3cu5A 141 8.19e-13 3ilhA 146 1.31e-12 3ktoA 136 1.34e-12 3eodA 130 1.50e-12 2gkgA 127 1.63e-12 2plnA 137 2.18e-12 1p2fA 220 2.33e-12 a.4.6.1,c.23.1.1 87720,87721 2qr3A 140 6.12e-12 2rdmA 132 6.23e-12 2qsjA 154 1.14e-11 3kyjB 145 6.32e-11 3kloA 225 1.26e-10 1qo0D 196 2.62e-07 c.23.1.3 31125 3kyiB 145 1.97e-06 2b4aA 138 4.21e-06 c.23.1.1 127817 2q0oA 236 0.000247 3gbgA 276 0.000373 2ch4A 320 0.001149 b.40.7.1,d.122.1.3 130447,130448 2fliA 220 0.1816 c.1.2.2 133714 1wv2A 265 0.2480 c.1.31.1 114910 3memA 457 0.4460 1xm3A 264 0.4813 c.1.31.1 115461 2htmA 268 0.7254 3cloA 258 1.044 1ec7A 446 1.770 c.1.11.2,d.54.1.1 29218,38862 3mznA 450 1.974 1bqgA 451 3.234 c.1.11.2,d.54.1.1 29217,38861 1h1yA 228 3.533 c.1.2.2 76506 2opjA 327 3.732 1tqjA 230 6.722 c.1.2.2 107228 2ps2A 371 9.336 3iipA 256 9.525 3iivA 263 12.17 3fv9A 386 13.00 1nsjA 205 13.17 c.1.2.4 28560 3fcpA 381 13.31 3jy6A 276 13.89 1y0eA 223 13.97 c.1.2.5 116297 2qr6A 393 15.17 2oqhA 385 15.61 1sjdA 368 15.75 c.1.11.2,d.54.1.1 105632,105633 2tpsA 227 15.86 c.1.3.1 28591 2i7dA 193 18.22 3ekgA 404 18.80 2v82A 212 20.32 1r0mA 375 20.35 c.1.11.2,d.54.1.1 104747,104748 1nsj 205 21.24 3igsA 232 21.81 3ceuA 210 22.08 2og9A 393 22.11 2wjjA 168 22.96 3m6wA 464 23.06 1g67A 225 23.15 c.1.3.1 60311 2gjlA 328 23.44 2wjgA 188 25.17 1nu5A 370 25.47 c.1.11.2,d.54.1.1 92183,92184 2hneA 436 25.64 1qopA 268 26.13 c.1.2.4 28570 1p0kA 349 26.28 c.1.4.1 87648 1a53A 247 28.06 c.1.2.4 28564 2oktA 342 28.13 3bjsA 428 28.59 2pp3A 398 30.97 2qgyA 391 31.64 1ep3A 311 31.90 c.1.4.1 28597 3dg6A 367 32.15 3e70C 328 33.14 1zfjA 491 34.06 d.37.1.1,c.1.5.1 144739,28638 3gy1A 408 35.14 1wbhA 214 35.31 c.1.10.1 120845 2ovlA 371 35.41 3bw2A 369 35.52 2yxbA 161 35.55 1a53 247 36.62 3ij5A 211 37.25 3brqA 296 37.31 1thfD 253 37.47 c.1.2.1 28535 2px0A 296 38.38 3ct2A 382 40.54 1y80A 210 41.71 1mucA 373 42.75 c.1.11.2,d.54.1.1 29236,38880 3f8dA 323 42.95 1vhcA 224 43.64 c.1.10.1 100661 3dgbA 382 45.32 2p0iA 456 45.46 1nvmA 345 45.54 a.5.7.1,c.1.10.5 86249,86250 3mkcA 394 45.72 3dfhA 394 45.79 2pceA 386 45.80 2oz3A 404 45.92 3iusA 286 46.06 3h12A 397 46.70 1rvkA 382 47.00 c.1.11.2,d.54.1.1 97928,97929 2nqlA 388 47.09 2qjjA 402 48.27 3a9iA 376 49.19 3bblA 287 49.90 2jgnA 185 50.12 1zd1A 284 52.33 3fxgA 455 53.49 3e3mA 355 53.90 1tkkA 366 56.58 c.1.11.2,d.54.1.1 107089,107090 1ri5A 298 56.68 c.66.1.34 97502 1z41A 338 56.98 c.1.4.1 124421 2pozA 392 57.80 3i6bA 180 58.13 2h8zA 359 59.19 3d8uA 275 59.76 3bppA 230 60.96 3kruA 343 60.98 1jq5A 370 60.99 e.22.1.2 67084 3gr7A 340 61.22 2djlA 314 62.81 3i6eA 385 63.53 2f6uA 234 64.21 c.1.4.1 133061 3hcwA 295 65.64 2gl5A 410 65.65 c.1.11.2,d.54.1.1 135336,135337 2r8eA 188 66.23 1sv0C 82 66.39 a.60.1.1 106037 2ox4A 403 66.78 2dzxA 248 67.01 2qdeA 397 67.40 3a1sA 258 68.37 1q6oA 216 69.04 c.1.2.3 95986 2hxtA 441 69.16 2pfsA 150 69.24 1mdlA 359 69.31 c.1.11.2,d.54.1.1 29247,38891 1tq4A 413 69.76 c.37.1.8 107201 2aeeA 211 70.87 c.61.1.1 126620 3h5tA 366 71.11 3n4eA 393 71.48 3i4kA 383 73.80 1jubA 311 73.88 c.1.4.1 90908 2wjhA 166 74.25 2hzgA 401 75.94 3gv0A 288 77.93 3bilA 348 78.33 3hgjA 349 78.70 2afbA 351 80.01 c.72.1.1 126674 2zbwA 335 80.08 2pgwA 384 80.20 3m4xA 456 80.27 1sqgA 429 80.51 a.79.1.3,c.66.1.38 105912,105913 3l65A 363 81.48 1o0yA 260 82.37 c.1.10.1 80756 1in4A 334 83.40 a.4.5.11,c.37.1.20 62597,62598 2o56A 407 84.64 1vc4A 254 85.90 c.1.2.4 100557 2p8bA 369 85.93 3iioA 262 86.50 1xbyA 216 87.06 c.1.2.3 121846 1rkuA 206 87.69 c.108.1.11 97627 1tqxA 227 88.28 c.1.2.2 112614 3mqtA 394 88.47 2pyyA 228 89.51