# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 1.35e-15 1kgsA 225 1.94e-15 a.4.6.1,c.23.1.1 68596,68597 2oqrA 230 1.95e-15 3cg4A 142 2.71e-15 3breA 358 3.23e-15 1yioA 208 4.06e-15 a.4.6.2,c.23.1.1 123326,123327 3c3mA 138 5.09e-15 1ys7A 233 5.13e-15 a.4.6.1,c.23.1.1 123961,123962 3dgfC 122 6.93e-15 3gl9A 122 7.05e-15 3cfyA 137 7.86e-15 2zwmA 130 9.30e-15 3crnA 132 9.61e-15 3f6pA 120 1.03e-14 1qkkA 155 1.07e-14 c.23.1.1 31104 3i5aA 334 1.15e-14 2zayA 147 1.24e-14 3cnbA 143 1.30e-14 2jbaA 127 1.33e-14 2rjnA 154 1.37e-14 1xhfA 123 1.44e-14 c.23.1.1 122003 3hdgA 137 1.46e-14 1dbwA 126 1.54e-14 c.23.1.1 31095 3lufA 259 1.66e-14 1a04A 215 1.82e-14 a.4.6.2,c.23.1.1 16234,31089 2qzjA 136 1.89e-14 3hv2A 153 1.94e-14 1s8nA 205 2.03e-14 c.23.1.1 105374 1zgzA 122 2.25e-14 c.23.1.1 125065 2vuhB 139 2.25e-14 1mvoA 136 2.28e-14 c.23.1.1 79513 1srrA 124 2.32e-14 c.23.1.1 31110 1zh2A 121 2.35e-14 c.23.1.1 125069 1b00A 127 2.36e-14 c.23.1.1 31122 2jk1A 139 2.66e-14 3grcA 140 2.73e-14 2pl1A 121 3.09e-14 c.23.1.1 149610 2a9oA 120 3.09e-14 c.23.1.1 126444 3jteA 143 3.52e-14 3lteA 132 3.76e-14 3khtA 144 5.47e-14 3f6cA 134 5.99e-14 3gwgA 129 6.77e-14 3h1gA 129 7.23e-14 3h1fA 129 8.22e-14 3kcnA 151 8.28e-14 3cz5A 153 9.02e-14 1mb3A 124 9.76e-14 c.23.1.1 78907 1jbeA 128 1.02e-13 c.23.1.1 62845 1u8tA 129 1.15e-13 c.23.1.1 113192 2qxyA 142 1.20e-13 3b2nA 133 1.31e-13 1tmyA 120 1.43e-13 c.23.1.1 31083 3a10A 116 1.60e-13 3h5iA 140 1.89e-13 3cg0A 140 2.03e-13 1dz3A 130 2.29e-13 c.23.1.1 31105 3hzhA 157 2.38e-13 3hebA 152 2.48e-13 1u0sY 118 2.69e-13 c.23.1.1 107566 2r25B 133 2.70e-13 c.23.1.1 151530 3eqzA 135 3.39e-13 2qv0A 143 3.64e-13 1k66A 149 3.65e-13 c.23.1.1 90941 1i3cA 149 3.66e-13 c.23.1.1 71112 3eulA 152 5.05e-13 3i42A 127 5.58e-13 1dcfA 136 5.67e-13 c.23.1.2 31124 3cu5A 141 6.73e-13 3hdvA 136 7.42e-13 3luaA 140 7.57e-13 3c97A 140 7.87e-13 2gkgA 127 9.67e-13 1p2fA 220 1.03e-12 a.4.6.1,c.23.1.1 87720,87721 2qvgA 143 1.21e-12 1oxkB 134 1.44e-12 c.23.1.1 93691 3eodA 130 1.62e-12 2plnA 137 1.96e-12 3ilhA 146 2.20e-12 3ktoA 136 2.37e-12 2rdmA 132 6.03e-12 2qr3A 140 7.82e-12 2qsjA 154 8.05e-12 3kyjB 145 8.08e-11 3kloA 225 1.31e-10 1qo0D 196 3.46e-07 c.23.1.3 31125 3kyiB 145 2.84e-06 2b4aA 138 4.43e-06 c.23.1.1 127817 2q0oA 236 0.000287 3gbgA 276 0.000360 2ch4A 320 0.002000 b.40.7.1,d.122.1.3 130447,130448 2fliA 220 0.2608 c.1.2.2 133714 1wv2A 265 0.4982 c.1.31.1 114910 1xm3A 264 0.8902 c.1.31.1 115461 3memA 457 0.9538 2htmA 268 1.106 3cloA 258 1.112 1ec7A 446 1.518 c.1.11.2,d.54.1.1 29218,38862 3mznA 450 1.926 2opjA 327 2.004 1bqgA 451 2.086 c.1.11.2,d.54.1.1 29217,38861 1tqjA 230 6.760 c.1.2.2 107228 1nsjA 205 8.140 c.1.2.4 28560 2ps2A 371 10.06 3iivA 263 10.48 3iipA 256 10.65 1r0mA 375 11.05 c.1.11.2,d.54.1.1 104747,104748 3ekgA 404 13.67 1y0eA 223 13.80 c.1.2.5 116297 3fv9A 386 13.88 1nsj 205 14.98 2oktA 342 15.14 2qr6A 393 15.46 1h1yA 228 15.83 c.1.2.2 76506 3dg6A 367 15.98 3m6wA 464 17.00 1nu5A 370 17.16 c.1.11.2,d.54.1.1 92183,92184 2i7dA 193 17.54 1g67A 225 18.01 c.1.3.1 60311 3h12A 397 19.58 3fcpA 381 20.33 2hneA 436 20.58 1sjdA 368 20.82 c.1.11.2,d.54.1.1 105632,105633 2p0iA 456 21.42 2tpsA 227 21.62 c.1.3.1 28591 3bw2A 369 21.65 2qgyA 391 23.12 2oqhA 385 23.21 2og9A 393 23.47 2v82A 212 25.53 3ct2A 382 25.83 1p0kA 349 26.20 c.1.4.1 87648 3ceuA 210 26.59 3dgbA 382 26.78 1zd1A 284 27.25 1mucA 373 27.96 c.1.11.2,d.54.1.1 29236,38880 2pp3A 398 28.11 3mkcA 394 29.35 3igsA 232 29.68 3bjsA 428 29.83 2oz3A 404 30.03 2pozA 392 30.97 3fxgA 455 31.38 3e70C 328 31.43 1y80A 210 32.15 2wjjA 168 32.44 2px0A 296 35.21 2gjlA 328 35.28 3n4eA 393 36.17 1a53 247 36.42 2hxtA 441 37.29 2nqlA 388 37.45 2ovlA 371 37.72 1tkkA 366 38.03 c.1.11.2,d.54.1.1 107089,107090 3brqA 296 38.12 3gy1A 408 38.29 1vhcA 224 39.10 c.1.10.1 100661 2wjgA 188 39.17 2h8zA 359 39.40 2zptX 295 40.59 1qopA 268 40.68 c.1.2.4 28570 3d8uA 275 41.03 1ep3A 311 41.09 c.1.4.1 28597 1thfD 253 41.73 c.1.2.1 28535 2ox4A 403 42.37 3ij5A 211 42.85 2yxlA 450 43.55 1xrsB 262 44.74 c.23.6.1,d.230.4.1 115884,115885 1wbhA 214 45.40 c.1.10.1 120845 2qdeA 397 46.17 3i6eA 385 46.69 2r5nA 669 47.38 c.36.1.6,c.36.1.10,c.48.1.1 151591,151592,151593 3bp8A 406 47.51 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1mdlA 359 47.53 c.1.11.2,d.54.1.1 29247,38891 3mqtA 394 48.04 2a0nA 265 50.20 c.1.2.1 125961 2jgnA 185 50.93 2zbwA 335 51.76 3jy6A 276 51.82 3h7vA 330 51.84 2f6uA 234 53.52 c.1.4.1 133061 2pgwA 384 55.03 3e3mA 355 55.30 2yxbA 161 56.19 1oroA 213 56.31 c.61.1.1 34093 1z41A 338 56.46 c.1.4.1 124421 3dfhA 394 56.57 1nvmA 345 57.09 a.5.7.1,c.1.10.5 86249,86250 1o0yA 260 57.67 c.1.10.1 80756 3m4xA 456 58.31 2aeeA 211 59.14 c.61.1.1 126620 3f8dA 323 60.06 3kruA 343 60.26 1rvkA 382 61.01 c.1.11.2,d.54.1.1 97928,97929 1vc4A 254 61.40 c.1.2.4 100557 2o56A 407 62.11 1ri5A 298 63.06 c.66.1.34 97502 1mdl 359 63.72 3a9iA 376 66.14 1in4A 334 66.23 a.4.5.11,c.37.1.20 62597,62598 1twdA 256 67.14 c.1.30.1 107397 1piiA 452 67.15 c.1.2.4,c.1.2.4 28559,28563 2gl5A 410 67.33 c.1.11.2,d.54.1.1 135336,135337 1sv0C 82 67.65 a.60.1.1 106037 3ik4A 365 68.15 1reqA 727 68.32 c.1.19.1,c.23.6.1 29620,31247 3i6bA 180 68.66 2pceA 386 68.76 3i4kA 383 68.83 3iioA 262 69.00 3l65A 363 69.77 2podA 410 70.24 2hzgA 401 70.67 2djlA 314 71.44 3h5tA 366 71.84 1sqgA 429 72.42 a.79.1.3,c.66.1.38 105912,105913 1a53A 247 72.58 c.1.2.4 28564 1zfjA 491 72.66 d.37.1.1,c.1.5.1 144739,28638 1wueA 386 72.76 c.1.11.2,d.54.1.1 114892,114893 1q6oA 216 72.98 c.1.2.3 95986 1v7cA 351 73.06 c.79.1.1 100446 1pii 452 73.54 3iusA 286 73.86 3hgjA 349 75.24 3bppA 230 75.61 3l68A 363 75.63 3bblA 287 75.81 3gr7A 340 76.50 3boxA 415 76.91 2r8eA 188 77.05 2p8bA 369 77.78 3l5lA 363 77.93 1tq4A 413 78.15 c.37.1.8 107201 2qjjA 402 81.28 1jubA 311 82.12 c.1.4.1 90908 2h9aA 445 84.54 3g41A 246 84.60 1fobA 334 88.32 c.1.8.3 83255 3bilA 348 89.10 3kp1A 763 89.68