# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3breA 358 1.26e-13 1yioA 208 1.35e-13 a.4.6.2,c.23.1.1 123326,123327 1ys7A 233 1.51e-13 a.4.6.1,c.23.1.1 123961,123962 3gt7A 154 1.64e-13 1kgsA 225 2.30e-13 a.4.6.1,c.23.1.1 68596,68597 3cg4A 142 2.88e-13 1qkkA 155 3.04e-13 c.23.1.1 31104 3cfyA 137 3.85e-13 2rjnA 154 4.21e-13 3dgfC 122 4.73e-13 2zwmA 130 5.02e-13 3cnbA 143 5.65e-13 3f6pA 120 5.66e-13 3crnA 132 6.12e-13 2vuhB 139 6.16e-13 3gl9A 122 6.33e-13 3hv2A 153 6.62e-13 2jbaA 127 6.67e-13 1dbwA 126 6.86e-13 c.23.1.1 31095 2zayA 147 7.49e-13 2jk1A 139 8.22e-13 3grcA 140 1.02e-12 1xhfA 123 1.08e-12 c.23.1.1 122003 1s8nA 205 1.12e-12 c.23.1.1 105374 1zgzA 122 1.15e-12 c.23.1.1 125065 1b00A 127 1.17e-12 c.23.1.1 31122 3hdgA 137 1.22e-12 3i5aA 334 1.22e-12 1zh2A 121 1.33e-12 c.23.1.1 125069 1a04A 215 1.42e-12 a.4.6.2,c.23.1.1 16234,31089 2qzjA 136 1.45e-12 3lufA 259 1.65e-12 1mvoA 136 1.66e-12 c.23.1.1 79513 3khtA 144 1.93e-12 3c3mA 138 1.95e-12 3jteA 143 2.01e-12 3f6cA 134 2.13e-12 2a9oA 120 2.41e-12 c.23.1.1 126444 2pl1A 121 2.63e-12 c.23.1.1 149610 1u8tA 129 3.02e-12 c.23.1.1 113192 3lteA 132 3.40e-12 1srrA 124 3.46e-12 c.23.1.1 31110 3kcnA 151 3.51e-12 1jbeA 128 4.18e-12 c.23.1.1 62845 3cz5A 153 4.18e-12 3h1fA 129 4.34e-12 2qxyA 142 5.18e-12 3h1gA 129 6.14e-12 1mb3A 124 6.62e-12 c.23.1.1 78907 3h5iA 140 6.70e-12 3gwgA 129 6.77e-12 1tmyA 120 6.87e-12 c.23.1.1 31083 3a10A 116 8.51e-12 3hebA 152 9.53e-12 1dcfA 136 1.09e-11 c.23.1.2 31124 3b2nA 133 1.12e-11 1u0sY 118 1.44e-11 c.23.1.1 107566 1i3cA 149 1.46e-11 c.23.1.1 71112 3eqzA 135 1.69e-11 3eulA 152 1.83e-11 1p2fA 220 1.84e-11 a.4.6.1,c.23.1.1 87720,87721 2qv0A 143 1.93e-11 3i42A 127 2.32e-11 2r25B 133 2.48e-11 c.23.1.1 151530 2gkgA 127 2.78e-11 3luaA 140 2.81e-11 1k66A 149 2.91e-11 c.23.1.1 90941 3hzhA 157 3.15e-11 3cu5A 141 3.85e-11 2oqrA 230 3.94e-11 1dz3A 130 4.77e-11 c.23.1.1 31105 2qvgA 143 7.53e-11 1oxkB 134 8.37e-11 c.23.1.1 93691 3ilhA 146 8.39e-11 3hdvA 136 9.73e-11 3ktoA 136 1.11e-10 2plnA 137 1.70e-10 2rdmA 132 2.07e-10 3eodA 130 2.07e-10 2qsjA 154 4.66e-10 2qr3A 140 7.64e-10 3kyjB 145 8.14e-10 3cg0A 140 1.57e-09 3kloA 225 2.17e-08 3c97A 140 1.06e-07 1qo0D 196 3.01e-06 c.23.1.3 31125 2b4aA 138 5.59e-05 c.23.1.1 127817 3kyiB 145 0.000429 3gbgA 276 0.04296 2q0oA 236 0.09143 2fliA 220 0.5282 c.1.2.2 133714 2ch4A 320 0.7444 b.40.7.1,d.122.1.3 130447,130448 2opjA 327 3.117 3cloA 258 3.638 2yxbA 161 3.902 1lstA 239 4.302 c.94.1.1 35755 1bqgA 451 4.382 c.1.11.2,d.54.1.1 29217,38861 1wv2A 265 5.233 c.1.31.1 114910 1xm3A 264 5.691 c.1.31.1 115461 1y80A 210 7.123 1q6oA 216 7.732 c.1.2.3 95986 1ec7A 446 8.292 c.1.11.2,d.54.1.1 29218,38862 3memA 457 8.459 3mznA 450 9.646 3igsA 232 11.16 3bw2A 369 12.42 1hslA 238 13.83 c.94.1.1 35804 1xrsB 262 16.70 c.23.6.1,d.230.4.1 115884,115885 2htmA 268 18.05 1xbyA 216 18.71 c.1.2.3 121846 1thfD 253 20.01 c.1.2.1 28535 1yxyA 234 21.11 c.1.2.5 124203 3lhdA 253 21.30 2i7dA 193 21.63 3gjyA 317 21.85 1y0eA 223 21.93 c.1.2.5 116297 3iipA 256 22.55 1lst 239 22.74 1vhcA 224 24.87 c.1.10.1 100661 2yxdA 183 25.34 3f4wA 211 26.10 2tpsA 227 26.67 c.1.3.1 28591 3kp1A 763 29.04 2a0nA 265 29.19 c.1.2.1 125961 1nu5A 370 30.85 c.1.11.2,d.54.1.1 92183,92184 3iivA 263 31.33 1wl8A 189 32.50 c.23.16.1 120997 1g67A 225 33.09 c.1.3.1 60311 2pyyA 228 34.44 3kbrA 239 34.87 1h5yA 253 36.03 c.1.2.1 65638 3lopA 364 36.18 2og9A 393 37.31 1wbhA 214 40.64 c.1.10.1 120845 2oqhA 385 43.90 3mqtA 394 43.91 1q92A 197 44.19 c.108.1.8 96250 1usgA 346 45.12 c.93.1.1 99864 3bppA 230 45.22 3dfhA 394 45.99 1i1qB 192 46.23 c.23.16.1 61544 8abpA 306 46.39 c.93.1.1 35647 2fqxA 318 46.71 3ct2A 382 47.77 2oktA 342 48.25 3mkcA 394 51.46 1twdA 256 53.48 c.1.30.1 107397 2pvuA 272 54.44 1mdlA 359 55.99 c.1.11.2,d.54.1.1 29247,38891 3mb5A 255 56.29 2oz8A 389 56.30 3brqA 296 56.37 1yeyA 444 56.82 c.1.11.2,d.54.1.1 116664,116665 1mucA 373 57.47 c.1.11.2,d.54.1.1 29236,38880 3iioA 262 58.26 2ps2A 371 58.37 3kruA 343 59.16 2v82A 212 59.83 1qdlB 195 60.57 c.23.16.1 31437 2h8zA 359 61.77 1tkkA 366 64.27 c.1.11.2,d.54.1.1 107089,107090 2qgyA 391 64.68 1i7qB 193 65.51 c.23.16.1 61902 3fv9A 386 68.65 1ccwA 137 69.31 c.23.6.1 31238 1ii5A 233 70.04 c.94.1.1 62412 2zz2A 252 70.07 1nvmA 345 70.10 a.5.7.1,c.1.10.5 86249,86250 3ceuA 210 72.64 2w43A 201 73.86 3fcpA 381 76.01 1tqxA 227 76.16 c.1.2.2 112614 2zz3A 252 77.87 1vl0A 292 78.23 c.2.1.2 108704 3h7vA 330 78.38 3dgbA 382 79.05 2xdqB 511 80.57 1sqgA 429 80.81 a.79.1.3,c.66.1.38 105912,105913 2nyuA 196 81.48 2hneA 436 81.77 1r6wA 322 82.20 c.1.11.2,d.54.1.1 97165,97166 2pceA 386 86.61 3h5lA 419 88.30