# List of top-scoring protein chains for T0634.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2zwmA 130 4.54e-15 1mvoA 136 5.51e-15 c.23.1.1 79513 3f6pA 120 7.32e-15 2a9oA 120 3.75e-14 c.23.1.1 126444 1b00A 127 7.42e-14 c.23.1.1 31122 1zesA 125 9.03e-14 c.23.1.1 124994 2jb9A 127 3.71e-13 2jbaA 127 4.19e-13 2jbaB 127 5.37e-13 2gwrA 238 3.39e-12 2oqrA 230 3.56e-12 1kgsA 225 1.09e-11 a.4.6.1,c.23.1.1 68596,68597 1ys7A 233 1.78e-11 a.4.6.1,c.23.1.1 123961,123962 1xhfA 123 2.10e-11 c.23.1.1 122003 1zh2A 121 9.51e-11 c.23.1.1 125069 1zgzA 122 2.16e-10 c.23.1.1 125065 2wb4A 459 4.16e-10 1w25A 459 5.12e-10 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2pl1A 121 1.29e-09 c.23.1.1 149610 3gl9A 122 1.75e-09 3dgfC 122 1.78e-09 3gt7A 154 3.91e-09 1p2fA 220 8.29e-09 a.4.6.1,c.23.1.1 87720,87721 2qzjA 136 2.64e-08 3a0uA 116 4.10e-08 3a10A 116 4.17e-08 3eq2A 394 4.44e-08 3fgzA 128 6.29e-08 3f7nA 128 6.58e-08 3cg4A 142 7.50e-08 3h1gA 129 8.20e-08 3lteA 132 1.16e-07 3fftA 128 1.29e-07 3gwgA 129 1.51e-07 2chyA 128 1.86e-07 c.23.1.1 31081 3c3mA 138 1.91e-07 2jvjA 132 2.19e-07 2jvkA 132 2.40e-07 3ffxA 128 2.43e-07 1srrA 124 2.45e-07 c.23.1.1 31110 2chfA 128 2.56e-07 c.23.1.1 31079 2fmkA 129 2.60e-07 c.23.1.1 133777 3ffwA 128 2.87e-07 1natA 124 2.92e-07 c.23.1.1 31113 3breA 358 2.98e-07 1ab6A 125 3.05e-07 c.23.1.1 31054 3i5aA 334 3.24e-07 2jviA 132 3.72e-07 1f51E 119 4.20e-07 c.23.1.1 31114 1ab5A 125 4.30e-07 c.23.1.1 31056 1dc7A 124 4.55e-07 c.23.1.1 31093 2ftkE 124 4.68e-07 c.23.1.1 134069 3h1fA 129 5.24e-07 1mb3A 124 5.33e-07 c.23.1.1 78907 1ymvA 129 5.44e-07 c.23.1.1 31045 3crnA 132 6.19e-07 1d4zA 128 6.85e-07 c.23.1.1 31047 1mihA 129 7.12e-07 c.23.1.1 84975 1jbeA 128 7.82e-07 c.23.1.1 62845 1kmiY 129 7.95e-07 c.23.1.1 72751 1cyeA 129 7.99e-07 c.23.1.1 31077 1s8nA 205 8.43e-07 c.23.1.1 105374 1ymuA 130 9.05e-07 c.23.1.1 31066 3cz5A 153 9.68e-07 1tmyA 120 1.28e-06 c.23.1.1 31083 1dz3A 130 1.33e-06 c.23.1.1 31105 5chyA 128 1.52e-06 c.23.1.1 31050 1u0sY 118 1.65e-06 c.23.1.1 107566 3lufA 259 1.77e-06 1udrA 129 1.78e-06 c.23.1.1 31041 1e6kA 130 1.82e-06 c.23.1.1 59306 3jteA 143 1.83e-06 1ehcA 128 1.92e-06 c.23.1.1 31053 1e6lA 127 2.12e-06 c.23.1.1 59307 1c4wA 128 2.40e-06 c.23.1.1 31046 1zdmA 129 2.45e-06 c.23.1.1 124941 1p6qA 129 2.46e-06 c.23.1.1 104074 1yioA 208 2.73e-06 a.4.6.2,c.23.1.1 123326,123327 1heyA 128 3.18e-06 c.23.1.1 31061 1e6mA 128 3.19e-06 c.23.1.1 31039 3cfyA 137 3.66e-06 1u8tA 128 3.75e-06 c.23.1.1 113192 1vlzA 128 4.41e-06 c.23.1.1 31048 1zitA 121 5.14e-06 1zy2A 150 5.47e-06 c.23.1.1 125811 1l5zA 155 7.42e-06 c.23.1.1 77722 1a04A 215 8.68e-06 a.4.6.2,c.23.1.1 16234,31089 1qkkA 155 8.73e-06 c.23.1.1 31104 6chyA 128 8.74e-06 c.23.1.1 31062 2zayA 147 1.10e-05 2ayxA 254 1.35e-05 c.23.1.1,c.23.1.6 127574,127575 3hdgA 137 1.36e-05 2id7A 128 1.41e-05 2ayzA 133 1.44e-05 c.23.1.1 127577 2qxyA 142 1.46e-05 3eodA 130 1.50e-05 3c97A 140 1.72e-05 2nt4A 127 2.38e-05 2jk1A 139 2.51e-05 2id9A 128 2.84e-05 2gkgA 127 2.95e-05 1ny5A 387 3.12e-05 c.23.1.1,c.37.1.20 92317,92318 1a2oA 349 3.42e-05 c.23.1.1,c.40.1.1 31120,32479 2qv0A 143 5.70e-05 1dbwA 126 5.94e-05 c.23.1.1 31095 3cnbA 143 5.98e-05 3cu5A 141 6.42e-05 2vuhB 139 6.45e-05 3kcnA 151 6.65e-05 1i3cA 149 6.87e-05 c.23.1.1 71112 1jlkA 147 6.98e-05 c.23.1.1 71727 1k68A 140 7.70e-05 c.23.1.1 90943 1k66A 149 9.50e-05 c.23.1.1 90941 2nt3A 127 0.000135 3khtA 144 0.000146 3b2nA 133 0.000181 2qr3A 140 0.000183 3f6cA 134 0.000206 2r25B 133 0.000212 c.23.1.1 151530 3dzdA 368 0.000225 1oxkB 134 0.000233 c.23.1.1 93691 3hebA 152 0.000266 3c3wA 225 0.000367 3grcA 140 0.000390 3luaA 140 0.000513 3hzhA 157 0.000517 3kyjB 145 0.000613 3eqzA 135 0.000673 3eulA 152 0.000812 3kyiB 145 0.001028 2plnA 137 0.001203 2hqrA 223 0.001286 2hqoA 123 0.001450 3cg0A 140 0.001715 3h5iA 140 0.001917 2qvgA 143 0.002094 2qsjA 154 0.002188 3cwoX 237 0.002336 3hv2A 153 0.002745 3i42A 127 0.006348 3hdvA 136 0.01406 3ilhA 146 0.02303 2rdmA 132 0.03174 2rjnA 154 0.04070 2j48A 119 0.04462 1dcfA 136 0.04712 c.23.1.2 31124 2b4aA 138 0.2407 c.23.1.1 127817 3ktoA 136 1.970 3ez7A 398 49.35 3ez2A 398 49.60 2gk3A 256 53.02 c.23.16.9 147123 2mobA 138 85.54 d.137.1.1 41453