# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 2.51e-14 3gl9A 122 3.74e-14 3dgfC 122 4.01e-14 3f6pA 120 4.99e-14 3cg4A 142 6.51e-14 2zwmA 130 7.08e-14 1u8tA 129 1.21e-13 c.23.1.1 113192 1w25A 459 1.32e-13 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2zayA 147 1.43e-13 3lteA 132 1.46e-13 3grcA 140 1.53e-13 2jbaA 127 1.58e-13 3crnA 132 2.25e-13 3gwgA 129 2.50e-13 3h1gA 129 2.65e-13 2oqrA 230 2.69e-13 1kgsA 225 2.83e-13 a.4.6.1,c.23.1.1 68596,68597 3h1fA 129 2.88e-13 3hebA 152 3.40e-13 3khtA 144 3.54e-13 3hdgA 137 4.78e-13 2gkgA 127 4.89e-13 2qzjA 136 7.45e-13 3cfyA 137 8.18e-13 2a9oA 120 9.00e-13 c.23.1.1 126444 3c3mA 138 9.36e-13 1zesA 125 1.17e-12 c.23.1.1 124994 1qkkA 155 1.23e-12 c.23.1.1 31104 1xhfA 123 1.29e-12 c.23.1.1 122003 3a10A 116 1.30e-12 1ys7A 233 1.42e-12 a.4.6.1,c.23.1.1 123961,123962 1s8nA 205 1.43e-12 c.23.1.1 105374 2qxyA 142 1.57e-12 3hzhA 157 1.97e-12 2qvgA 143 2.14e-12 3chy 128 2.18e-12 1zh2A 121 2.26e-12 c.23.1.1 125069 1dbwA 126 2.63e-12 c.23.1.1 31095 3hdvA 136 3.06e-12 1zgzA 122 3.06e-12 c.23.1.1 125065 1srrA 124 3.12e-12 c.23.1.1 31110 1b00A 127 3.36e-12 c.23.1.1 31122 1yioA 208 3.42e-12 a.4.6.2,c.23.1.1 123326,123327 1mb3A 124 3.88e-12 c.23.1.1 78907 1jbeA 128 4.15e-12 c.23.1.1 62845 3h5iA 140 4.34e-12 3cnbA 143 4.49e-12 3luaA 140 4.60e-12 1p2fA 220 5.02e-12 a.4.6.1,c.23.1.1 87720,87721 2pl1A 121 5.39e-12 c.23.1.1 149610 1tmyA 120 6.72e-12 c.23.1.1 31083 1mvoA 136 6.75e-12 c.23.1.1 79513 1a04A 215 7.08e-12 a.4.6.2,c.23.1.1 16234,31089 1i3cA 149 7.59e-12 c.23.1.1 71112 1k68A 140 1.16e-11 c.23.1.1 90943 3eqzA 135 1.19e-11 2rjnA 154 1.42e-11 1dz3A 130 1.57e-11 c.23.1.1 31105 1u0sY 118 1.89e-11 c.23.1.1 107566 3eodA 130 2.07e-11 2vuhB 139 2.66e-11 1k66A 149 2.69e-11 c.23.1.1 90941 1dcfA 136 3.33e-11 c.23.1.2 31124 1qo0D 196 3.42e-11 c.23.1.3 31125 2jk1A 139 3.42e-11 2rdmA 132 4.39e-11 3b2nA 133 8.03e-11 2qr3A 140 9.73e-11 3cg0A 140 1.41e-10 2qv0A 143 2.83e-10 3jteA 143 2.97e-10 1oxkB 134 3.65e-10 c.23.1.1 93691 2plnA 137 5.08e-10 3cu5A 141 6.77e-10 3hv2A 153 1.26e-09 3i5aA 334 6.77e-09 3breA 358 1.61e-08 3lufA 259 1.94e-08 3i42A 127 2.04e-08 3ilhA 146 2.65e-08 2qsjA 154 3.96e-08 3kcnA 151 4.03e-08 3kyiB 145 5.08e-08 3ktoA 136 6.31e-08 3c97A 140 1.19e-07 3cz5A 153 3.74e-07 3f6cA 134 1.01e-06 1l3lA 234 1.71e-06 a.4.6.2,d.110.5.1 73541,73542 2r25B 133 2.02e-06 c.23.1.1 151530 3eulA 152 2.26e-06 3kyjB 145 2.29e-05 2b4aA 138 0.000319 c.23.1.1 127817 3memA 457 0.001210 3kloA 225 0.001418 2ch4A 320 0.002224 b.40.7.1,d.122.1.3 130447,130448 3gbgA 276 0.1931 2q0oA 236 0.2063 3kp1A 763 1.067 1rpxA 230 3.298 c.1.2.2 28536 1jq5A 370 3.428 e.22.1.2 67084 1bmtA 246 8.052 a.46.1.1,c.23.6.1 17757,31235 3cloA 258 8.967 1xrsB 262 9.087 c.23.6.1,d.230.4.1 115884,115885 1nsjA 205 9.578 c.1.2.4 28560 1xm3A 264 9.586 c.1.31.1 115461 2yxbA 161 10.54 1tqxA 227 13.09 c.1.2.2 112614 1y80A 210 14.35 3ib0A 345 14.71 3gjyA 317 16.35 1m2eA 135 17.48 c.23.1.5 78478 1ccwA 137 19.25 c.23.6.1 31238 2aw5A 541 21.05 2p2vA 288 22.34 1suvE 345 23.40 i.21.1.1 99011 2opjA 327 24.51 2ebnA 289 25.45 c.1.8.5 28990 2i2xB 258 27.16 3kjxA 344 27.72 1vm6A 228 28.36 d.81.1.3,c.2.1.3 108877,118631 3bp8A 406 30.10 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1rd5A 262 33.32 c.1.2.4 111772 1kq3A 376 38.11 e.22.1.2 68790 5reqA 727 38.36 c.1.19.1,c.23.6.1 29632,31259 3h5tA 366 38.70 1o0sA 605 38.86 c.2.1.7,c.58.1.3 86540,86541 2r5nA 669 41.04 c.36.1.6,c.36.1.10,c.48.1.1 151591,151592,151593 1h1yA 228 41.89 c.1.2.2 76506 3hl0A 353 41.92 3jy6A 276 43.78 1pxwA 128 44.10 d.79.3.1 95305 2deoA 230 44.11 1vqoF 120 45.06 d.79.3.1 120368 3gv0A 288 49.01 1g67A 225 50.12 c.1.3.1 60311 3ce9A 354 51.76 1s8eA 333 52.57 d.159.1.4 105368 1nmuB 104 52.80 d.79.3.1 80666 1reqA 727 55.21 c.1.19.1,c.23.6.1 29620,31247 2r8oA 669 56.70 c.36.1.6,c.36.1.10,c.48.1.1 151731,151732,151733 1dvjA 246 57.48 c.1.2.3 28546 3huuA 305 60.20 1oz9A 150 61.06 d.92.1.15 93808 1qopA 268 61.22 c.1.2.4 28570 1zwzA 126 61.67 d.79.3.1 146031 3d6fA 179 63.28 1dqnA 230 63.57 c.61.1.1 34067 2rgyA 290 63.97 3dscA 349 64.95 d.159.1.4 157840 1wl8A 189 65.48 c.23.16.1 120997 2hu5A 582 65.57 b.69.7.2,c.69.1.33 136763,136764 1h7mA 102 67.25 d.79.3.1 83485 1y0eA 223 71.98 c.1.2.5 116297 3d6mA 179 72.96 1km3A 247 76.11 c.1.2.3 72739 2dqwA 294 77.71 3i09A 375 79.92 3gd7A 390 80.04 3ctlA 231 82.52 1vc4A 254 83.32 c.1.2.4 100557 3ct7A 231 86.34 3ewbX 293 89.61