# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 7.52e-15 3gl9A 122 9.09e-15 3dgfC 122 1.10e-14 3f6pA 120 1.54e-14 3cg4A 142 1.98e-14 2zwmA 130 2.15e-14 3grcA 140 3.69e-14 1u8tA 129 3.76e-14 c.23.1.1 113192 2zayA 147 3.83e-14 1w25A 459 3.85e-14 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3lteA 132 4.04e-14 2jbaA 127 4.73e-14 3crnA 132 6.64e-14 2oqrA 230 7.96e-14 3gwgA 129 1.02e-13 1kgsA 225 1.10e-13 a.4.6.1,c.23.1.1 68596,68597 3h1gA 129 1.13e-13 3h1fA 129 1.15e-13 3khtA 144 1.18e-13 3hebA 152 1.20e-13 2gkgA 127 1.35e-13 3hdgA 137 1.40e-13 2qzjA 136 1.86e-13 3c3mA 138 2.64e-13 2a9oA 120 2.83e-13 c.23.1.1 126444 3cfyA 137 2.96e-13 1s8nA 205 3.40e-13 c.23.1.1 105374 3a10A 116 3.61e-13 1qkkA 155 3.94e-13 c.23.1.1 31104 1zesA 125 4.05e-13 c.23.1.1 124994 1xhfA 123 4.14e-13 c.23.1.1 122003 2qxyA 142 5.00e-13 1ys7A 233 5.03e-13 a.4.6.1,c.23.1.1 123961,123962 3hzhA 157 7.36e-13 1dbwA 126 7.49e-13 c.23.1.1 31095 1b00A 127 8.17e-13 c.23.1.1 31122 1zh2A 121 8.19e-13 c.23.1.1 125069 1zgzA 122 8.71e-13 c.23.1.1 125065 2qvgA 143 9.23e-13 3chy 128 9.78e-13 1yioA 208 1.10e-12 a.4.6.2,c.23.1.1 123326,123327 3hdvA 136 1.25e-12 1mb3A 124 1.29e-12 c.23.1.1 78907 3cnbA 143 1.32e-12 1srrA 124 1.39e-12 c.23.1.1 31110 3h5iA 140 1.48e-12 1p2fA 220 1.65e-12 a.4.6.1,c.23.1.1 87720,87721 2pl1A 121 1.66e-12 c.23.1.1 149610 1jbeA 128 1.87e-12 c.23.1.1 62845 1tmyA 120 1.99e-12 c.23.1.1 31083 3luaA 140 2.30e-12 1mvoA 136 2.38e-12 c.23.1.1 79513 1a04A 215 2.56e-12 a.4.6.2,c.23.1.1 16234,31089 3eqzA 135 2.84e-12 1k68A 140 3.24e-12 c.23.1.1 90943 1i3cA 149 3.30e-12 c.23.1.1 71112 2rjnA 154 4.03e-12 1dz3A 130 6.15e-12 c.23.1.1 31105 3eodA 130 7.12e-12 1u0sY 118 7.41e-12 c.23.1.1 107566 1k66A 149 9.83e-12 c.23.1.1 90941 2jk1A 139 1.03e-11 2vuhB 139 1.07e-11 1dcfA 136 1.49e-11 c.23.1.2 31124 1qo0D 196 1.89e-11 c.23.1.3 31125 2rdmA 132 2.14e-11 2qr3A 140 3.10e-11 3b2nA 133 3.25e-11 3cg0A 140 4.08e-11 2qv0A 143 1.01e-10 1oxkB 134 1.57e-10 c.23.1.1 93691 3jteA 143 1.63e-10 2plnA 137 1.87e-10 3cu5A 141 2.65e-10 3hv2A 153 5.12e-10 3i5aA 334 3.77e-09 3breA 358 6.45e-09 3ilhA 146 8.56e-09 3lufA 259 9.67e-09 3i42A 127 9.72e-09 3kcnA 151 1.91e-08 3kyiB 145 2.22e-08 2qsjA 154 2.27e-08 3ktoA 136 3.02e-08 3c97A 140 8.32e-08 3cz5A 153 2.09e-07 3f6cA 134 7.70e-07 1l3lA 234 8.97e-07 a.4.6.2,d.110.5.1 73541,73542 2r25B 133 1.69e-06 c.23.1.1 151530 3eulA 152 2.89e-06 3kyjB 145 2.72e-05 2b4aA 138 0.000488 c.23.1.1 127817 2ch4A 320 0.000978 b.40.7.1,d.122.1.3 130447,130448 3memA 457 0.002674 3kloA 225 0.003625 3gbgA 276 0.08019 2q0oA 236 0.2138 3kp1A 763 1.915 1rpxA 230 2.433 c.1.2.2 28536 3gjyA 317 3.036 1jq5A 370 5.957 e.22.1.2 67084 1tqxA 227 8.565 c.1.2.2 112614 3cloA 258 11.09 1nsjA 205 12.51 c.1.2.4 28560 1xrsB 262 12.57 c.23.6.1,d.230.4.1 115884,115885 3bp8A 406 15.46 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1bmtA 246 17.57 a.46.1.1,c.23.6.1 17757,31235 1rd5A 262 17.72 c.1.2.4 111772 2opjA 327 18.39 2aw5A 541 18.56 1h1yA 228 23.31 c.1.2.2 76506 3ib0A 345 23.78 1xm3A 264 24.43 c.1.31.1 115461 2p2vA 288 31.85 1suvE 345 32.00 i.21.1.1 99011 1jv4A 162 33.09 b.60.1.1 67343 3kjxA 344 33.44 1o0sA 605 34.06 c.2.1.7,c.58.1.3 86540,86541 3me7A 170 35.16 1kq3A 376 35.46 e.22.1.2 68790 1y80A 210 35.94 2yxbA 161 36.67 2r5nA 669 37.03 c.36.1.6,c.36.1.10,c.48.1.1 151591,151592,151593 2deoA 230 37.82 3jy6A 276 38.05 1vqoF 120 38.28 d.79.3.1 120368 1m2eA 135 39.82 c.23.1.5 78478 1pxwA 128 43.62 d.79.3.1 95305 2d00A 109 43.70 c.149.1.1 146441 1ccwA 137 45.77 c.23.6.1 31238 2i2xB 258 47.76 1qopA 268 48.09 c.1.2.4 28570 2hu5A 582 49.66 b.69.7.2,c.69.1.33 136763,136764 2r8oA 669 50.20 c.36.1.6,c.36.1.10,c.48.1.1 151731,151732,151733 1y0eA 223 50.86 c.1.2.5 116297 3douA 191 51.78 2ebnA 289 53.55 c.1.8.5 28990 1vybA 238 60.42 d.151.1.1 108897 3ce9A 354 61.33 1vm6A 228 61.93 d.81.1.3,c.2.1.3 108877,118631 3ewbX 293 62.00 3gv0A 288 63.33 3h5tA 366 63.63 1dvjA 246 65.36 c.1.2.3 28546 1z6rA 406 65.45 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1zwzA 126 68.86 d.79.3.1 146031 1uh4A 637 69.72 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 2rgyA 290 70.34 1nmuB 104 73.42 d.79.3.1 80666 2dqwA 294 76.69 3dscA 349 78.71 d.159.1.4 157840 1h7mA 102 78.81 d.79.3.1 83485 1g67A 225 82.58 c.1.3.1 60311 1cp2A 269 83.96 c.37.1.10 32269 2ap1A 327 85.34 c.55.1.10,c.55.1.10 127108,127109 1s8eA 333 86.95 d.159.1.4 105368 3ertA 261 88.06 a.123.1.1 19292 2nyuA 196 88.59