# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 1.46e-16 3gl9A 122 1.51e-16 3f6pA 120 2.45e-16 3dgfC 122 4.67e-16 2zwmA 130 5.19e-16 2zayA 147 7.71e-16 2jbaA 127 7.74e-16 3grcA 140 8.53e-16 1w25A 459 9.45e-16 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3cg4A 142 9.56e-16 3hdgA 137 1.03e-15 1u8tA 129 1.07e-15 c.23.1.1 113192 1kgsA 225 1.13e-15 a.4.6.1,c.23.1.1 68596,68597 3crnA 132 1.55e-15 2oqrA 230 1.69e-15 3lteA 132 1.73e-15 3h1gA 129 2.43e-15 3hebA 152 2.50e-15 3h1fA 129 2.89e-15 3gwgA 129 2.94e-15 3khtA 144 3.83e-15 2gkgA 127 4.20e-15 2a9oA 120 5.39e-15 c.23.1.1 126444 1xhfA 123 6.83e-15 c.23.1.1 122003 2qzjA 136 6.99e-15 1s8nA 205 1.06e-14 c.23.1.1 105374 1zesA 125 1.30e-14 c.23.1.1 124994 3hzhA 157 1.42e-14 1qkkA 155 1.53e-14 c.23.1.1 31104 3cfyA 137 1.54e-14 1ys7A 233 1.77e-14 a.4.6.1,c.23.1.1 123961,123962 3a10A 116 1.78e-14 1zh2A 121 1.98e-14 c.23.1.1 125069 2qvgA 143 2.01e-14 1yioA 208 2.24e-14 a.4.6.2,c.23.1.1 123326,123327 3chy 128 2.25e-14 1tmyA 120 3.12e-14 c.23.1.1 31083 2qxyA 142 3.28e-14 3hdvA 136 3.46e-14 1dbwA 126 3.72e-14 c.23.1.1 31095 1b00A 127 3.97e-14 c.23.1.1 31122 1zgzA 122 4.24e-14 c.23.1.1 125065 1p2fA 220 4.39e-14 a.4.6.1,c.23.1.1 87720,87721 1jbeA 128 5.55e-14 c.23.1.1 62845 1srrA 124 5.64e-14 c.23.1.1 31110 3c3mA 138 5.71e-14 1mb3A 124 5.74e-14 c.23.1.1 78907 3cnbA 143 5.85e-14 3luaA 140 7.28e-14 2pl1A 121 7.56e-14 c.23.1.1 149610 1mvoA 136 8.30e-14 c.23.1.1 79513 2rjnA 154 9.75e-14 1a04A 215 1.17e-13 a.4.6.2,c.23.1.1 16234,31089 1i3cA 149 1.21e-13 c.23.1.1 71112 3eodA 130 1.22e-13 3h5iA 140 1.33e-13 1k68A 140 1.54e-13 c.23.1.1 90943 1dz3A 130 1.79e-13 c.23.1.1 31105 1u0sY 118 2.19e-13 c.23.1.1 107566 1dcfA 136 2.38e-13 c.23.1.2 31124 2jk1A 139 3.00e-13 3eqzA 135 3.29e-13 1k66A 149 3.56e-13 c.23.1.1 90941 2vuhB 139 4.46e-13 2qr3A 140 7.26e-13 3b2nA 133 7.69e-13 1qo0D 196 1.01e-12 c.23.1.3 31125 1oxkB 134 1.62e-12 c.23.1.1 93691 2rdmA 132 1.63e-12 3jteA 143 2.03e-12 3cg0A 140 3.13e-12 2qv0A 143 3.15e-12 3cu5A 141 1.72e-11 3hv2A 153 1.86e-11 2plnA 137 2.39e-11 3i5aA 334 1.77e-10 3i42A 127 4.93e-10 3ilhA 146 5.11e-10 3lufA 259 5.24e-10 3kcnA 151 5.92e-10 3breA 358 7.73e-10 2qsjA 154 1.22e-09 3ktoA 136 1.38e-09 3c97A 140 4.19e-09 3kyiB 145 9.37e-09 3cz5A 153 1.00e-08 2r25B 133 1.92e-08 c.23.1.1 151530 3f6cA 134 2.22e-08 3eulA 152 3.23e-08 1l3lA 234 4.52e-07 a.4.6.2,d.110.5.1 73541,73542 3kyjB 145 4.29e-06 2ch4A 320 4.27e-05 b.40.7.1,d.122.1.3 130447,130448 2b4aA 138 0.000235 c.23.1.1 127817 3kloA 225 0.000537 3memA 457 0.001272 3gbgA 276 0.03794 2q0oA 236 0.06277 1rpxA 230 0.6156 c.1.2.2 28536 3kp1A 763 1.850 3gjyA 317 1.945 1xm3A 264 3.588 c.1.31.1 115461 3ib0A 345 3.638 1jq5A 370 4.191 e.22.1.2 67084 1tqxA 227 4.864 c.1.2.2 112614 1suvE 345 5.789 i.21.1.1 99011 3bp8A 406 6.441 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2yxbA 161 7.130 3cloA 258 7.260 1pxwA 128 10.03 d.79.3.1 95305 1vqoF 120 11.65 d.79.3.1 120368 2qy9A 309 11.84 a.24.13.1,c.37.1.10 151469,151470 1bmtA 246 12.37 a.46.1.1,c.23.6.1 17757,31235 1h1yA 228 12.41 c.1.2.2 76506 3hl0A 353 12.58 1nsjA 205 13.89 c.1.2.4 28560 2opjA 327 15.62 1sdsA 117 16.92 d.79.3.1 105439 1zwzA 126 17.86 d.79.3.1 146031 1y80A 210 18.06 1xrsB 262 18.41 c.23.6.1,d.230.4.1 115884,115885 1qopA 268 18.72 c.1.2.4 28570 1g67A 225 18.97 c.1.3.1 60311 1rd5A 262 19.29 c.1.2.4 111772 3lm8A 222 20.41 1m2eA 135 21.26 c.23.1.5 78478 3ctlA 231 22.68 1ccwA 137 23.00 c.23.6.1 31238 3b9qA 302 23.16 1jv4A 162 24.51 b.60.1.1 67343 3gv0A 288 25.53 3delB 242 26.49 1nmuB 104 26.77 d.79.3.1 80666 2fc3A 124 26.84 d.79.3.1 147019 1h7mA 102 27.70 d.79.3.1 83485 3kzgA 237 29.05 2d00A 109 29.34 c.149.1.1 146441 3jy6A 276 30.46 2aw5A 541 32.37 3i6vA 232 32.82 2tpsA 227 34.14 c.1.3.1 28591 3ct7A 231 34.48 3e70C 328 36.33 1y0eA 223 36.33 c.1.2.5 116297 2flsA 132 36.50 3k94A 223 36.64 3g41A 246 36.73 3id5C 130 38.91 1lst 239 39.61 2hu5A 582 40.31 b.69.7.2,c.69.1.33 136763,136764 1mxsA 225 40.43 c.1.10.1 91494 3iusA 286 41.56 2i2xB 258 41.95 1jj2F 119 43.43 d.79.3.1 63091 1kq3A 376 48.46 e.22.1.2 68790 2e7pA 116 50.60 1wv2A 265 52.76 c.1.31.1 114910 2og2A 359 53.04 3huuA 305 55.02 1tqjA 230 55.10 c.1.2.2 107228 2yw3A 207 55.43 2aleA 134 55.53 d.79.3.1 146061 3dr5A 221 56.05 1o0sA 605 56.47 c.2.1.7,c.58.1.3 86540,86541 2aysA 348 56.47 c.94.1.2 127570 1ep3A 311 57.91 c.1.4.1 28597 1a53 247 58.97 3h8qA 114 61.03 2tysA 268 62.62 c.1.2.4 28572 2rgyA 290 63.04 3inpA 246 63.57 3cq9A 227 64.58 3bkxA 275 65.40 1s8eA 333 65.81 d.159.1.4 105368 3h5tA 366 66.43 1xpjA 126 67.83 c.108.1.18 115739 3kjxA 344 68.59 3ju3A 118 68.96 3dscA 349 69.33 d.159.1.4 157840 1geqA 248 69.69 c.1.2.4 28589 2b6dA 345 70.71 c.94.1.2 127985 1yadA 221 71.28 1oz9A 150 71.49 d.92.1.15 93808 3ktzA 251 72.44 2ap1A 327 73.23 c.55.1.10,c.55.1.10 127108,127109 1dvjA 246 73.24 c.1.2.3 28546 2dqwA 294 73.29 1a8e 329 73.92 1z6rA 406 74.73 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 5reqA 727 76.74 c.1.19.1,c.23.6.1 29632,31259 2yxlA 450 77.66 2deoA 230 78.73 2ht9A 146 80.50 2f6kA 307 80.82 c.1.9.15 133047 1oi7A 288 81.46 c.2.1.8,c.23.4.1 87049,87050 2b3zA 373 81.52 c.71.1.2,c.97.1.2 127807,127808 3kbrA 239 82.43 1cp2A 269 83.92 c.37.1.10 32269 1yxyA 234 84.10 c.1.2.5 124203 3h7mA 234 84.36 1zynA 202 84.45 c.47.1.2,c.47.1.2 125838,125839 1uf3A 228 85.72 d.159.1.6 99317 2e58A 308 87.60 1kw4A 89 87.91 a.60.1.2 73077