# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gl9A 122 3.63e-16 3dgfC 122 4.22e-16 3gt7A 154 4.69e-16 3f6pA 120 4.78e-16 2zwmA 130 6.32e-16 1u8tA 129 2.25e-15 c.23.1.1 113192 3lteA 132 2.29e-15 3cg4A 142 2.30e-15 2zayA 147 2.59e-15 3grcA 140 3.17e-15 2jbaA 127 3.56e-15 1w25A 459 3.71e-15 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3crnA 132 3.81e-15 3h1fA 129 5.13e-15 2oqrA 230 5.75e-15 3h1gA 129 5.77e-15 3gwgA 129 5.86e-15 3hebA 152 6.89e-15 3hdgA 137 7.25e-15 1kgsA 225 9.65e-15 a.4.6.1,c.23.1.1 68596,68597 3khtA 144 1.15e-14 3c3mA 138 1.68e-14 2a9oA 120 1.86e-14 c.23.1.1 126444 2qzjA 136 3.03e-14 1zesA 125 3.04e-14 c.23.1.1 124994 3a10A 116 3.04e-14 2gkgA 127 3.49e-14 2qxyA 142 3.56e-14 1s8nA 205 3.71e-14 c.23.1.1 105374 1xhfA 123 3.83e-14 c.23.1.1 122003 1qkkA 155 3.99e-14 c.23.1.1 31104 3hzhA 157 4.39e-14 3cfyA 137 5.02e-14 1dbwA 126 5.64e-14 c.23.1.1 31095 2qvgA 143 5.85e-14 3chy 128 7.20e-14 1zh2A 121 7.52e-14 c.23.1.1 125069 1ys7A 233 7.83e-14 a.4.6.1,c.23.1.1 123961,123962 1mb3A 124 9.49e-14 c.23.1.1 78907 1p2fA 220 1.03e-13 a.4.6.1,c.23.1.1 87720,87721 1srrA 124 1.06e-13 c.23.1.1 31110 1b00A 127 1.07e-13 c.23.1.1 31122 1zgzA 122 1.08e-13 c.23.1.1 125065 3hdvA 136 1.15e-13 1yioA 208 1.21e-13 a.4.6.2,c.23.1.1 123326,123327 3cnbA 143 1.52e-13 1mvoA 136 1.57e-13 c.23.1.1 79513 2pl1A 121 1.75e-13 c.23.1.1 149610 1jbeA 128 1.85e-13 c.23.1.1 62845 1tmyA 120 2.24e-13 c.23.1.1 31083 1a04A 215 2.43e-13 a.4.6.2,c.23.1.1 16234,31089 3luaA 140 2.65e-13 3h5iA 140 2.71e-13 1i3cA 149 2.81e-13 c.23.1.1 71112 3eqzA 135 3.48e-13 1k68A 140 3.98e-13 c.23.1.1 90943 3eodA 130 4.74e-13 2rjnA 154 5.93e-13 1dz3A 130 5.97e-13 c.23.1.1 31105 1u0sY 118 9.54e-13 c.23.1.1 107566 1k66A 149 1.29e-12 c.23.1.1 90941 1dcfA 136 1.32e-12 c.23.1.2 31124 2vuhB 139 1.37e-12 2jk1A 139 1.50e-12 1qo0D 196 3.11e-12 c.23.1.3 31125 2rdmA 132 3.18e-12 3b2nA 133 3.93e-12 2qr3A 140 4.50e-12 1oxkB 134 1.20e-11 c.23.1.1 93691 3jteA 143 1.50e-11 3cg0A 140 1.68e-11 2plnA 137 2.40e-11 2qv0A 143 2.63e-11 3hv2A 153 8.19e-11 3cu5A 141 8.24e-11 3i5aA 334 1.07e-09 3ilhA 146 1.49e-09 3lufA 259 2.36e-09 3breA 358 2.76e-09 3kcnA 151 4.34e-09 3i42A 127 4.85e-09 2qsjA 154 5.90e-09 3ktoA 136 7.81e-09 3kyiB 145 1.14e-08 3c97A 140 3.43e-08 3cz5A 153 1.44e-07 3f6cA 134 2.09e-07 2r25B 133 2.14e-07 c.23.1.1 151530 3eulA 152 2.63e-07 1l3lA 234 2.92e-07 a.4.6.2,d.110.5.1 73541,73542 3kyjB 145 7.11e-06 3memA 457 6.65e-05 2b4aA 138 0.000310 c.23.1.1 127817 2ch4A 320 0.000395 b.40.7.1,d.122.1.3 130447,130448 3kloA 225 0.002131 3gbgA 276 0.02920 2q0oA 236 0.03872 1rpxA 230 0.3861 c.1.2.2 28536 3kp1A 763 0.9116 1h1yA 228 3.243 c.1.2.2 76506 1tqxA 227 5.178 c.1.2.2 112614 3cloA 258 9.029 1jq5A 370 9.902 e.22.1.2 67084 3gjyA 317 11.31 3bp8A 406 11.63 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1xrsB 262 12.14 c.23.6.1,d.230.4.1 115884,115885 1bmtA 246 12.46 a.46.1.1,c.23.6.1 17757,31235 1qopA 268 13.66 c.1.2.4 28570 1dvjA 246 14.56 c.1.2.3 28546 1xm3A 264 15.48 c.1.31.1 115461 3ctlA 231 17.45 2aw5A 541 19.86 3kjxA 344 20.44 2yxbA 161 20.98 1tqjA 230 21.07 c.1.2.2 107228 1nsjA 205 22.87 c.1.2.4 28560 2fliA 220 25.78 c.1.2.2 133714 1o0sA 605 26.49 c.2.1.7,c.58.1.3 86540,86541 1y80A 210 26.84 1ccwA 137 30.02 c.23.6.1 31238 3ct7A 231 30.22 3ib0A 345 32.07 1km3A 247 32.98 c.1.2.3 72739 2opjA 327 34.84 1suvE 345 36.84 i.21.1.1 99011 3me7A 170 39.12 1y0eA 223 39.65 c.1.2.5 116297 3jy6A 276 41.16 3gv0A 288 42.05 2i2xB 258 43.25 3h5tA 366 43.27 1jv4A 162 45.56 b.60.1.1 67343 1ep3A 311 50.26 c.1.4.1 28597 1geqA 248 50.36 c.1.2.4 28589 1vc4A 254 51.35 c.1.2.4 100557 2deoA 230 51.67 1pii 452 55.17 2v82A 212 56.10 1kq3A 376 58.03 e.22.1.2 68790 3ce9A 354 58.59 1vm6A 228 58.95 d.81.1.3,c.2.1.3 108877,118631 1a53 247 61.09 2r5nA 669 62.51 c.36.1.6,c.36.1.10,c.48.1.1 151591,151592,151593 1rd5A 262 67.72 c.1.2.4 111772 2p2vA 288 68.74 1wl8A 189 71.38 c.23.16.1 120997 1ynuA 473 71.67 c.67.1.4 123762 2qy9A 309 71.89 a.24.13.1,c.37.1.10 151469,151470 3douA 191 73.14 2rgyA 290 74.05 3hl0A 353 74.58 1z6rA 406 80.19 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2dqwA 294 82.23 1vybA 238 85.06 d.151.1.1 108897 1g67A 225 88.43 c.1.3.1 60311 1mxsA 225 88.98 c.1.10.1 91494 3huuA 305 89.01