# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gl9A 122 1.37e-15 3gt7A 154 1.50e-15 3f6pA 120 1.55e-15 3dgfC 122 2.44e-15 2zwmA 130 3.02e-15 1u8tA 129 4.57e-15 c.23.1.1 113192 3grcA 140 5.68e-15 3cg4A 142 7.10e-15 3lteA 132 7.11e-15 1w25A 459 8.04e-15 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2jbaA 127 8.58e-15 2zayA 147 1.10e-14 3crnA 132 1.38e-14 3hdgA 137 1.42e-14 3h1fA 129 1.60e-14 3khtA 144 1.68e-14 3h1gA 129 1.69e-14 3gwgA 129 1.86e-14 2qzjA 136 2.92e-14 2a9oA 120 3.37e-14 c.23.1.1 126444 3hebA 152 3.54e-14 1kgsA 225 3.67e-14 a.4.6.1,c.23.1.1 68596,68597 2gkgA 127 3.72e-14 1xhfA 123 5.03e-14 c.23.1.1 122003 1s8nA 205 5.03e-14 c.23.1.1 105374 1zesA 125 5.04e-14 c.23.1.1 124994 3cfyA 137 6.69e-14 1ys7A 233 6.83e-14 a.4.6.1,c.23.1.1 123961,123962 2qxyA 142 7.23e-14 3a10A 116 8.63e-14 1zh2A 121 8.63e-14 c.23.1.1 125069 1b00A 127 1.02e-13 c.23.1.1 31122 3chy 128 1.08e-13 3hzhA 157 1.25e-13 1qkkA 155 1.31e-13 c.23.1.1 31104 2qvgA 143 1.50e-13 1zgzA 122 1.50e-13 c.23.1.1 125065 1dbwA 126 1.52e-13 c.23.1.1 31095 2oqrA 230 1.93e-13 3hdvA 136 2.02e-13 3cnbA 143 2.16e-13 1tmyA 120 2.17e-13 c.23.1.1 31083 1yioA 208 2.23e-13 a.4.6.2,c.23.1.1 123326,123327 1mb3A 124 2.43e-13 c.23.1.1 78907 1srrA 124 2.44e-13 c.23.1.1 31110 3c3mA 138 2.51e-13 1jbeA 128 2.52e-13 c.23.1.1 62845 3h5iA 140 2.54e-13 3luaA 140 2.61e-13 2pl1A 121 3.15e-13 c.23.1.1 149610 1a04A 215 3.95e-13 a.4.6.2,c.23.1.1 16234,31089 1mvoA 136 6.33e-13 c.23.1.1 79513 1k68A 140 6.64e-13 c.23.1.1 90943 1p2fA 220 6.74e-13 a.4.6.1,c.23.1.1 87720,87721 1i3cA 149 9.52e-13 c.23.1.1 71112 1u0sY 118 1.04e-12 c.23.1.1 107566 3eodA 130 1.36e-12 1k66A 149 1.43e-12 c.23.1.1 90941 2rjnA 154 1.94e-12 2vuhB 139 1.98e-12 2jk1A 139 2.20e-12 3eqzA 135 5.14e-12 1dcfA 136 5.43e-12 c.23.1.2 31124 1qo0D 196 7.92e-12 c.23.1.3 31125 2rdmA 132 8.16e-12 3b2nA 133 8.71e-12 1dz3A 130 1.38e-11 c.23.1.1 31105 2qr3A 140 1.44e-11 1oxkB 134 2.85e-11 c.23.1.1 93691 3jteA 143 2.85e-11 2qv0A 143 4.20e-11 2plnA 137 4.27e-11 3cg0A 140 4.53e-11 3hv2A 153 1.44e-10 3i5aA 334 4.55e-10 3cu5A 141 4.81e-10 3i42A 127 2.95e-09 2qsjA 154 3.12e-09 3lufA 259 3.15e-09 3ktoA 136 3.18e-09 3breA 358 5.08e-09 3kcnA 151 7.97e-09 3ilhA 146 9.03e-09 3kyiB 145 1.95e-08 3cz5A 153 5.80e-08 3f6cA 134 1.39e-07 3eulA 152 3.17e-07 2r25B 133 4.99e-07 c.23.1.1 151530 3c97A 140 5.78e-07 1l3lA 234 4.25e-06 a.4.6.2,d.110.5.1 73541,73542 3kyjB 145 2.11e-05 2b4aA 138 0.000394 c.23.1.1 127817 2ch4A 320 0.002147 b.40.7.1,d.122.1.3 130447,130448 3memA 457 0.002265 3kloA 225 0.003608 2q0oA 236 0.07086 3gbgA 276 0.2044 3kp1A 763 1.040 1rpxA 230 1.833 c.1.2.2 28536 1m2eA 135 2.590 c.23.1.5 78478 1tqxA 227 4.828 c.1.2.2 112614 1ccwA 137 5.125 c.23.6.1 31238 1y80A 210 6.850 2aw5A 541 7.960 2yxbA 161 8.008 1xrsB 262 8.759 c.23.6.1,d.230.4.1 115884,115885 1ep3A 311 8.818 c.1.4.1 28597 3gjyA 317 9.390 3ctlA 231 9.774 2opjA 327 10.89 1h1yA 228 13.38 c.1.2.2 76506 1rd5A 262 13.74 c.1.2.4 111772 3ct7A 231 13.99 1qopA 268 16.09 c.1.2.4 28570 1dvjA 246 16.36 c.1.2.3 28546 3ib0A 345 16.49 1jq5A 370 16.92 e.22.1.2 67084 1g67A 225 19.84 c.1.3.1 60311 1xm3A 264 20.41 c.1.31.1 115461 2deoA 230 21.76 1vc4A 254 22.46 c.1.2.4 100557 3me7A 170 22.95 3dscA 349 26.31 d.159.1.4 157840 1km3A 247 26.47 c.1.2.3 72739 3kjxA 344 26.49 1yxyA 234 26.70 c.1.2.5 124203 3bp8A 406 27.00 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2c6qA 351 28.28 1bqgA 451 28.53 c.1.11.2,d.54.1.1 29217,38861 2flsA 132 30.79 1suvE 345 31.61 i.21.1.1 99011 1ec7A 446 31.89 c.1.11.2,d.54.1.1 29218,38862 1mxsA 225 31.90 c.1.10.1 91494 1nsjA 205 33.37 c.1.2.4 28560 3cu2A 237 34.82 1vqoF 120 36.46 d.79.3.1 120368 1s8eA 333 36.60 d.159.1.4 105368 1a53 247 39.91 2i2xB 258 40.10 1tqjA 230 46.87 c.1.2.2 107228 1i7qB 193 46.94 c.23.16.1 61902 1bifA 469 50.03 c.37.1.7,c.60.1.4 31961,34003 1wv2A 265 51.55 c.1.31.1 114910 1bif 469 51.85 1nmuB 104 52.18 d.79.3.1 80666 3delB 242 56.82 3h5tA 366 58.11 2tpsA 227 60.77 c.1.3.1 28591 2dqwA 294 62.46 2fliA 220 62.59 c.1.2.2 133714 3brqA 296 62.67 1kjnA 157 62.91 c.115.1.1 72614 1pxwA 128 63.92 d.79.3.1 95305 2zz4A 252 64.82 1zwzA 126 65.31 d.79.3.1 146031 1vm6A 228 65.91 d.81.1.3,c.2.1.3 108877,118631 3iebA 218 66.43 1y0eA 223 70.42 c.1.2.5 116297 3cloA 258 71.56 3kzgA 237 72.78 1uf3A 228 73.86 d.159.1.6 99317 1ii7A 333 77.84 d.159.1.4 62415 2nyuA 196 78.70 1mkyA 439 79.07 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1yadA 221 79.25 3mznA 450 81.72 1pk5A 248 83.08 a.123.1.1 88139 2qu7A 288 85.97 1uh4A 637 86.05 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 3kbrA 239 86.86 3g1aA 228 86.93 2zz2A 252 87.59 2zz5A 252 88.57 1o0sA 605 89.53 c.2.1.7,c.58.1.3 86540,86541 2zz3A 252 89.53