# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 1.39e-17 3gl9A 122 2.01e-17 3f6pA 120 2.87e-17 3dgfC 122 3.03e-17 3cg4A 142 5.13e-17 2zwmA 130 5.57e-17 2zayA 147 6.40e-17 1w25A 459 7.04e-17 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3grcA 140 8.23e-17 1u8tA 129 1.02e-16 c.23.1.1 113192 3crnA 132 1.81e-16 2jbaA 127 1.86e-16 1kgsA 225 2.03e-16 a.4.6.1,c.23.1.1 68596,68597 2oqrA 230 2.20e-16 3lteA 132 2.33e-16 3hdgA 137 2.55e-16 3hebA 152 2.82e-16 3khtA 144 4.14e-16 3gwgA 129 4.78e-16 3h1gA 129 4.98e-16 3h1fA 129 5.41e-16 2qzjA 136 5.46e-16 2gkgA 127 7.66e-16 2a9oA 120 1.23e-15 c.23.1.1 126444 1s8nA 205 1.24e-15 c.23.1.1 105374 1xhfA 123 1.27e-15 c.23.1.1 122003 3cfyA 137 1.37e-15 1qkkA 155 1.86e-15 c.23.1.1 31104 3a10A 116 1.89e-15 1zesA 125 1.94e-15 c.23.1.1 124994 3hzhA 157 2.11e-15 3c3mA 138 2.74e-15 1ys7A 233 2.82e-15 a.4.6.1,c.23.1.1 123961,123962 2qvgA 143 2.91e-15 1zh2A 121 2.91e-15 c.23.1.1 125069 3chy 128 3.65e-15 2qxyA 142 4.08e-15 1yioA 208 5.07e-15 a.4.6.2,c.23.1.1 123326,123327 1b00A 127 5.31e-15 c.23.1.1 31122 3hdvA 136 5.40e-15 1tmyA 120 5.84e-15 c.23.1.1 31083 1dbwA 126 5.89e-15 c.23.1.1 31095 1zgzA 122 7.81e-15 c.23.1.1 125065 3h5iA 140 8.39e-15 1jbeA 128 9.89e-15 c.23.1.1 62845 1mb3A 124 1.08e-14 c.23.1.1 78907 3cnbA 143 1.20e-14 2pl1A 121 1.22e-14 c.23.1.1 149610 1srrA 124 1.25e-14 c.23.1.1 31110 3luaA 140 1.29e-14 1p2fA 220 1.55e-14 a.4.6.1,c.23.1.1 87720,87721 1a04A 215 2.00e-14 a.4.6.2,c.23.1.1 16234,31089 1mvoA 136 2.48e-14 c.23.1.1 79513 2rjnA 154 2.65e-14 1k68A 140 2.65e-14 c.23.1.1 90943 1dz3A 130 2.66e-14 c.23.1.1 31105 1i3cA 149 2.80e-14 c.23.1.1 71112 3eodA 130 3.70e-14 1u0sY 118 5.28e-14 c.23.1.1 107566 2vuhB 139 7.94e-14 3eqzA 135 9.06e-14 2jk1A 139 9.15e-14 1k66A 149 9.36e-14 c.23.1.1 90941 1qo0D 196 1.25e-13 c.23.1.3 31125 2qr3A 140 1.27e-13 1dcfA 136 1.38e-13 c.23.1.2 31124 2rdmA 132 2.29e-13 3b2nA 133 2.92e-13 3cg0A 140 8.59e-13 3jteA 143 9.18e-13 2qv0A 143 1.32e-12 1oxkB 134 1.57e-12 c.23.1.1 93691 3cu5A 141 2.92e-12 3hv2A 153 4.59e-12 2plnA 137 6.81e-12 3i5aA 334 1.65e-10 3i42A 127 2.75e-10 3lufA 259 3.23e-10 3kcnA 151 4.16e-10 3breA 358 4.25e-10 3ilhA 146 4.29e-10 2qsjA 154 7.98e-10 3kyiB 145 1.64e-09 3ktoA 136 1.81e-09 3c97A 140 2.38e-09 3cz5A 153 1.11e-08 1l3lA 234 1.55e-08 a.4.6.2,d.110.5.1 73541,73542 3f6cA 134 4.00e-08 2r25B 133 9.64e-08 c.23.1.1 151530 3eulA 152 1.08e-07 3kyjB 145 2.64e-06 3memA 457 3.30e-05 2ch4A 320 8.08e-05 b.40.7.1,d.122.1.3 130447,130448 2b4aA 138 0.000496 c.23.1.1 127817 3kloA 225 0.001084 2q0oA 236 0.02480 3gbgA 276 0.02634 1nsjA 205 2.684 c.1.2.4 28560 3kp1A 763 2.784 1rpxA 230 5.395 c.1.2.2 28536 3cloA 258 7.802 3gjyA 317 8.091 1tqxA 227 12.47 c.1.2.2 112614 3ctlA 231 16.23 1jv4A 162 16.34 b.60.1.1 67343 1jq5A 370 16.93 e.22.1.2 67084 2opjA 327 17.59 1bmtA 246 17.72 a.46.1.1,c.23.6.1 17757,31235 3ib0A 345 19.15 2qy9A 309 19.45 a.24.13.1,c.37.1.10 151469,151470 2yxbA 161 19.58 2aw5A 541 20.06 1xrsB 262 20.88 c.23.6.1,d.230.4.1 115884,115885 1suvE 345 22.13 i.21.1.1 99011 1rd5A 262 24.23 c.1.2.4 111772 1xm3A 264 27.30 c.1.31.1 115461 1nmuB 104 27.68 d.79.3.1 80666 3kzgA 237 30.03 1vybA 238 30.69 d.151.1.1 108897 3bp8A 406 31.66 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1o0sA 605 31.75 c.2.1.7,c.58.1.3 86540,86541 3e70C 328 37.57 1qopA 268 37.60 c.1.2.4 28570 1y0eA 223 38.60 c.1.2.5 116297 1vqoF 120 39.55 d.79.3.1 120368 1a4yA 460 41.42 c.10.1.1 30852 1ynuA 473 44.67 c.67.1.4 123762 1m2eA 135 45.01 c.23.1.5 78478 3gv0A 288 45.06 2og2A 359 46.17 2i2xB 258 51.05 1pxwA 128 51.52 d.79.3.1 95305 1vm6A 228 51.55 d.81.1.3,c.2.1.3 108877,118631 2deoA 230 51.57 3delB 242 53.18 1ec7A 446 53.84 c.1.11.2,d.54.1.1 29218,38862 3bkxA 275 54.22 1y80A 210 54.62 3b9qA 302 55.06 3kjxA 344 58.99 1vc4A 254 61.34 c.1.2.4 100557 1lst 239 61.77 1zwzA 126 61.94 d.79.3.1 146031 1jtkA 136 63.08 c.97.1.1 71862 2rgyA 290 63.17 2q8xA 331 63.39 2ebnA 289 64.76 c.1.8.5 28990 1h1yA 228 65.30 c.1.2.2 76506 1pii 452 67.32 2r5nA 669 71.75 c.36.1.6,c.36.1.10,c.48.1.1 151591,151592,151593 2tpsA 227 75.42 c.1.3.1 28591 1cp2A 269 76.38 c.37.1.10 32269 3hl0A 353 76.56 1fo3A 460 77.31 a.102.2.1 18845 1g67A 225 81.58 c.1.3.1 60311 2flsA 132 82.34 1s8eA 333 82.57 d.159.1.4 105368 2qu7A 288 89.44