# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 5.97e-17 3f6pA 120 7.25e-17 3dgfC 122 7.63e-17 2zayA 147 1.04e-16 3gl9A 122 1.18e-16 3cg4A 142 1.38e-16 2zwmA 130 1.49e-16 1u8tA 129 2.21e-16 c.23.1.1 113192 3grcA 140 2.64e-16 2jbaA 127 5.72e-16 3lteA 132 5.89e-16 2gkgA 127 6.95e-16 3crnA 132 7.09e-16 2oqrA 230 7.26e-16 3h1gA 129 8.38e-16 3cfyA 137 1.27e-15 2qzjA 136 1.28e-15 1w25A 459 1.36e-15 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3c3mA 138 1.52e-15 3hdgA 137 1.77e-15 3khtA 144 1.91e-15 3gwgA 129 2.02e-15 3h1fA 129 2.30e-15 2a9oA 120 4.12e-15 c.23.1.1 126444 1s8nA 205 4.62e-15 c.23.1.1 105374 1zh2A 121 5.00e-15 c.23.1.1 125069 1xhfA 123 5.20e-15 c.23.1.1 122003 1kgsA 225 5.31e-15 a.4.6.1,c.23.1.1 68596,68597 1qkkA 155 5.39e-15 c.23.1.1 31104 1zgzA 122 5.45e-15 c.23.1.1 125065 1dbwA 126 6.16e-15 c.23.1.1 31095 1ys7A 233 6.25e-15 a.4.6.1,c.23.1.1 123961,123962 2qxyA 142 6.52e-15 3a10A 116 7.01e-15 1zesA 125 7.24e-15 c.23.1.1 124994 3hebA 152 9.66e-15 3hzhA 157 1.22e-14 1mb3A 124 1.23e-14 c.23.1.1 78907 1srrA 124 1.42e-14 c.23.1.1 31110 3chy 128 1.49e-14 1yioA 208 1.56e-14 a.4.6.2,c.23.1.1 123326,123327 3cnbA 143 1.82e-14 3hdvA 136 2.07e-14 1b00A 127 2.07e-14 c.23.1.1 31122 2qvgA 143 2.09e-14 2pl1A 121 2.20e-14 c.23.1.1 149610 3h5iA 140 2.21e-14 1p2fA 220 3.15e-14 a.4.6.1,c.23.1.1 87720,87721 1jbeA 128 3.30e-14 c.23.1.1 62845 1tmyA 120 3.84e-14 c.23.1.1 31083 1mvoA 136 4.35e-14 c.23.1.1 79513 3luaA 140 5.53e-14 1a04A 215 6.78e-14 a.4.6.2,c.23.1.1 16234,31089 1dz3A 130 8.38e-14 c.23.1.1 31105 1i3cA 149 8.49e-14 c.23.1.1 71112 1k68A 140 1.04e-13 c.23.1.1 90943 3eqzA 135 1.15e-13 2rjnA 154 1.19e-13 3eodA 130 1.37e-13 2vuhB 139 1.83e-13 2rdmA 132 1.84e-13 1u0sY 118 2.34e-13 c.23.1.1 107566 2jk1A 139 2.56e-13 2qr3A 140 2.77e-13 1k66A 149 2.79e-13 c.23.1.1 90941 1qo0D 196 3.57e-13 c.23.1.3 31125 1dcfA 136 3.98e-13 c.23.1.2 31124 3b2nA 133 9.19e-13 3cg0A 140 1.01e-12 2qv0A 143 3.47e-12 3jteA 143 4.09e-12 1oxkB 134 4.94e-12 c.23.1.1 93691 3cu5A 141 8.58e-12 2plnA 137 9.60e-12 3hv2A 153 2.15e-11 3i5aA 334 1.99e-10 3lufA 259 4.69e-10 3i42A 127 5.11e-10 3ilhA 146 6.73e-10 3breA 358 1.26e-09 3kcnA 151 1.67e-09 2qsjA 154 1.70e-09 3kyiB 145 2.22e-09 3ktoA 136 8.56e-09 3c97A 140 1.25e-08 3cz5A 153 2.76e-08 1l3lA 234 8.46e-08 a.4.6.2,d.110.5.1 73541,73542 2r25B 133 1.30e-07 c.23.1.1 151530 3f6cA 134 1.35e-07 3eulA 152 1.75e-07 3kyjB 145 4.29e-06 2b4aA 138 0.000183 c.23.1.1 127817 2ch4A 320 0.000497 b.40.7.1,d.122.1.3 130447,130448 3memA 457 0.002225 3kloA 225 0.009054 3gbgA 276 0.01222 2q0oA 236 0.06285 1qr6A 584 1.247 c.2.1.7,c.58.1.3 30293,33941 1rpxA 230 1.605 c.1.2.2 28536 1nsjA 205 1.711 c.1.2.4 28560 1h1yA 228 3.643 c.1.2.2 76506 1wv2A 265 5.345 c.1.31.1 114910 1a53 247 6.168 3gjyA 317 6.345 1xrsB 262 6.896 c.23.6.1,d.230.4.1 115884,115885 3l0zA 350 7.235 3hl0A 353 7.350 1xm3A 264 7.682 c.1.31.1 115461 1pii 452 10.13 2bexA 460 10.35 c.10.1.1 128398 1a4yA 460 10.64 c.10.1.1 30852 1id1A 153 11.57 c.2.1.9 62286 3ib0A 345 12.43 1bqgA 451 12.59 c.1.11.2,d.54.1.1 29217,38861 3menA 362 12.91 2r2jA 382 12.94 1rd5A 262 14.69 c.1.2.4 111772 2yxbA 161 14.72 1bmtA 246 14.74 a.46.1.1,c.23.6.1 17757,31235 1t5oA 351 14.93 c.124.1.5 106459 2bv9A 290 15.37 c.1.8.3 129242 1y80A 210 15.65 2x0dA 413 15.81 3kzgA 237 15.91 2r8oA 669 16.81 c.36.1.6,c.36.1.10,c.48.1.1 151731,151732,151733 2zc8A 369 17.34 2aw5A 541 17.39 1vm6A 228 18.62 d.81.1.3,c.2.1.3 108877,118631 1ec7A 446 18.94 c.1.11.2,d.54.1.1 29218,38862 2tpsA 227 18.98 c.1.3.1 28591 1dv1A 449 19.32 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1yl5A 247 19.77 c.2.1.3,d.81.1.3 123617,123618 1xahA 354 21.16 1qopA 268 22.10 c.1.2.4 28570 1g67A 225 23.50 c.1.3.1 60311 2gruA 368 23.99 2h0rA 216 24.70 1hurA 180 24.73 c.37.1.8 32052 3clhA 343 25.35 2q8xA 331 26.09 1vqoF 120 27.22 d.79.3.1 120368 2wmiB 606 28.00 1nmuB 104 28.72 d.79.3.1 80666 2qu7A 288 29.51 1rrmA 386 29.78 e.22.1.2 105081 1ymtA 246 30.04 1jbkA 195 30.22 c.37.1.20 71631 2v5xA 388 30.37 3cloA 258 30.95 1bw0A 416 31.03 c.67.1.1 34385 1vc4A 254 31.06 c.1.2.4 100557 1r5tA 142 32.13 c.97.1.1 104812 3ew8A 388 32.49 1ll2A 333 33.09 c.68.1.14 74005 1omp 370 33.20 2b6dA 345 33.97 c.94.1.2 127985 1ua7A 422 35.06 b.71.1.1,c.1.8.1 107759,107760 3inpA 246 37.14 1h7mA 102 37.40 d.79.3.1 83485 1suvE 345 38.26 i.21.1.1 99011 2gzaA 361 39.35 1qs0A 407 39.88 c.36.1.11 31829 1piiA 452 40.40 c.1.2.4,c.1.2.4 28559,28563 2phzA 311 41.62 c.92.2.4 149488 3i53A 332 45.08 3h5tA 366 46.76 2c6qA 351 47.09 1ccwA 137 48.51 c.23.6.1 31238 1gpeA 587 50.18 c.3.1.2,d.16.1.1 30387,37951 3kp1A 763 51.67 2djlA 314 51.97 3jy6A 276 52.11 1mkyA 439 52.19 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 3m05A 114 53.47 2ap1A 327 53.65 c.55.1.10,c.55.1.10 127108,127109 3c61A 314 53.81 2fvkA 559 56.14 b.92.1.3,c.1.9.6 134204,134205 1tqjA 230 56.24 c.1.2.2 107228 1f6yA 262 56.71 c.1.21.2 29673 2o7cA 398 56.97 c.67.1.3 148663 1yadA 221 57.66 3e70C 328 57.77 1di0A 158 57.99 c.16.1.1 30957 1a53A 247 58.06 c.1.2.4 28564 2fp3A 316 59.47 3d8uA 275 59.59 3ct7A 231 60.54 3g9xA 299 60.59 1pxwA 128 62.22 d.79.3.1 95305 1j9lA 247 62.31 c.106.1.1 62762 1geqA 248 63.15 c.1.2.4 28589 1ep3A 311 63.42 c.1.4.1 28597 2voyI 128 63.56 1pk5A 248 63.77 a.123.1.1 88139 1vyrA 364 64.97 c.1.4.1 108906 3ctlA 231 65.10 1zwzA 126 65.16 d.79.3.1 146031 3fozA 316 68.27 1yucA 255 68.48 3ewkA 227 68.49 2b7kA 200 69.74 c.47.1.10 128042 1m2eA 135 69.97 c.23.1.5 78478 2hf9A 226 70.18 2g5fA 450 70.27 d.161.1.1 134654 2acvA 463 72.61 c.87.1.10 146047 2fliA 220 72.79 c.1.2.2 133714 3jsaA 328 73.19 2h9aA 445 73.53 3hsuA 503 73.80 2ze3A 275 73.86 1tzfA 259 74.27 c.68.1.13 107476 2nyuA 196 75.07 1pvdA 537 75.17 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 3ggdA 245 75.45 2vliA 183 79.16 3ie1A 431 79.37 1vypX 364 79.73 c.1.4.1 108905 3ivmA 693 80.01 2qagB 427 81.29 2zwiA 373 82.93 3m7vA 413 83.12 1jv4A 162 83.27 b.60.1.1 67343 1ut8A 291 84.34 a.60.7.1,c.120.1.2 99908,99909 3lm8A 222 85.89 2b99A 156 87.43 2qy9A 309 89.72 a.24.13.1,c.37.1.10 151469,151470