# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 2.76e-17 3gl9A 122 4.12e-17 3f6pA 120 4.87e-17 3dgfC 122 5.34e-17 2zwmA 130 9.25e-17 3cg4A 142 9.94e-17 2zayA 147 1.17e-16 1w25A 459 1.43e-16 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3grcA 140 1.51e-16 1u8tA 129 1.62e-16 c.23.1.1 113192 3crnA 132 3.04e-16 1kgsA 225 3.06e-16 a.4.6.1,c.23.1.1 68596,68597 2jbaA 127 3.09e-16 2oqrA 230 3.91e-16 3lteA 132 4.08e-16 3hdgA 137 5.45e-16 3hebA 152 5.81e-16 3khtA 144 7.44e-16 3gwgA 129 7.82e-16 3h1gA 129 8.14e-16 2qzjA 136 8.50e-16 3h1fA 129 9.11e-16 2gkgA 127 1.13e-15 2a9oA 120 1.95e-15 c.23.1.1 126444 1s8nA 205 2.31e-15 c.23.1.1 105374 1xhfA 123 2.39e-15 c.23.1.1 122003 1qkkA 155 2.50e-15 c.23.1.1 31104 3cfyA 137 2.64e-15 1zesA 125 2.97e-15 c.23.1.1 124994 3a10A 116 2.99e-15 1ys7A 233 4.60e-15 a.4.6.1,c.23.1.1 123961,123962 3hzhA 157 4.60e-15 1zh2A 121 4.74e-15 c.23.1.1 125069 2qxyA 142 5.54e-15 3c3mA 138 5.88e-15 2qvgA 143 6.05e-15 3chy 128 6.13e-15 1yioA 208 7.84e-15 a.4.6.2,c.23.1.1 123326,123327 1b00A 127 8.11e-15 c.23.1.1 31122 1dbwA 126 8.51e-15 c.23.1.1 31095 3hdvA 136 9.54e-15 1tmyA 120 1.05e-14 c.23.1.1 31083 1zgzA 122 1.07e-14 c.23.1.1 125065 1jbeA 128 1.39e-14 c.23.1.1 62845 3h5iA 140 1.43e-14 3cnbA 143 1.43e-14 2pl1A 121 1.79e-14 c.23.1.1 149610 1mb3A 124 2.05e-14 c.23.1.1 78907 1srrA 124 2.12e-14 c.23.1.1 31110 3luaA 140 2.16e-14 1p2fA 220 2.17e-14 a.4.6.1,c.23.1.1 87720,87721 1a04A 215 2.65e-14 a.4.6.2,c.23.1.1 16234,31089 1mvoA 136 2.85e-14 c.23.1.1 79513 1dz3A 130 3.24e-14 c.23.1.1 31105 2rjnA 154 4.07e-14 1k68A 140 4.14e-14 c.23.1.1 90943 1i3cA 149 4.83e-14 c.23.1.1 71112 3eodA 130 6.38e-14 1u0sY 118 7.74e-14 c.23.1.1 107566 3eqzA 135 1.01e-13 2vuhB 139 1.20e-13 2jk1A 139 1.21e-13 1k66A 149 1.43e-13 c.23.1.1 90941 1qo0D 196 1.55e-13 c.23.1.3 31125 1dcfA 136 1.85e-13 c.23.1.2 31124 2qr3A 140 2.06e-13 2rdmA 132 3.28e-13 3b2nA 133 4.00e-13 3cg0A 140 1.21e-12 2qv0A 143 1.46e-12 3jteA 143 1.58e-12 1oxkB 134 2.51e-12 c.23.1.1 93691 3cu5A 141 4.06e-12 3hv2A 153 7.87e-12 2plnA 137 8.18e-12 3i5aA 334 1.60e-10 3i42A 127 3.87e-10 3lufA 259 4.04e-10 3breA 358 4.05e-10 3ilhA 146 5.01e-10 3kcnA 151 5.49e-10 2qsjA 154 9.06e-10 3kyiB 145 9.88e-10 3ktoA 136 1.78e-09 3c97A 140 3.41e-09 3cz5A 153 1.26e-08 1l3lA 234 2.57e-08 a.4.6.2,d.110.5.1 73541,73542 3f6cA 134 3.85e-08 2r25B 133 1.06e-07 c.23.1.1 151530 3eulA 152 1.09e-07 3kyjB 145 2.17e-06 3memA 457 4.21e-05 2ch4A 320 0.000124 b.40.7.1,d.122.1.3 130447,130448 2b4aA 138 0.000323 c.23.1.1 127817 3kloA 225 0.000919 2q0oA 236 0.01523 3gbgA 276 0.02082 1rpxA 230 2.849 c.1.2.2 28536 1nsjA 205 3.210 c.1.2.4 28560 3kp1A 763 3.353 3gjyA 317 5.924 3cloA 258 6.210 1tqxA 227 9.396 c.1.2.2 112614 3ctlA 231 10.80 1xm3A 264 15.28 c.1.31.1 115461 1jq5A 370 16.16 e.22.1.2 67084 1bmtA 246 16.65 a.46.1.1,c.23.6.1 17757,31235 2aw5A 541 17.51 2opjA 327 19.12 2yxbA 161 22.22 1rd5A 262 22.51 c.1.2.4 111772 1xrsB 262 22.67 c.23.6.1,d.230.4.1 115884,115885 3ib0A 345 22.78 2qy9A 309 24.89 a.24.13.1,c.37.1.10 151469,151470 1y0eA 223 25.16 c.1.2.5 116297 1vm6A 228 26.64 d.81.1.3,c.2.1.3 108877,118631 2ebnA 289 27.23 c.1.8.5 28990 1qopA 268 28.59 c.1.2.4 28570 1suvE 345 30.17 i.21.1.1 99011 3kjxA 344 30.29 1h1yA 228 31.55 c.1.2.2 76506 1o0sA 605 32.11 c.2.1.7,c.58.1.3 86540,86541 3gv0A 288 33.50 1vqoF 120 33.85 d.79.3.1 120368 1jv4A 162 34.18 b.60.1.1 67343 1zwzA 126 34.54 d.79.3.1 146031 1pii 452 35.42 1m2eA 135 35.66 c.23.1.5 78478 3bp8A 406 39.06 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1nmuB 104 41.15 d.79.3.1 80666 1vybA 238 41.94 d.151.1.1 108897 1pxwA 128 43.50 d.79.3.1 95305 1a4yA 460 43.63 c.10.1.1 30852 1ec7A 446 47.53 c.1.11.2,d.54.1.1 29218,38862 2i2xB 258 50.78 1y80A 210 51.25 2og2A 359 52.33 2rgyA 290 53.26 3kzgA 237 55.17 3h5tA 366 55.72 3jy6A 276 56.75 3b9qA 302 56.97 1vc4A 254 60.09 c.1.2.4 100557 1ynuA 473 60.61 c.67.1.4 123762 2deoA 230 62.65 3douA 191 65.48 2qu7A 288 66.00 3e70C 328 66.86 1sdsA 117 67.44 d.79.3.1 105439 2tpsA 227 69.32 c.1.3.1 28591 2q8xA 331 70.85 1cp2A 269 70.87 c.37.1.10 32269 1ccwA 137 73.55 c.23.6.1 31238 2flsA 132 79.49 3bkxA 275 82.10 2p2vA 288 82.20 1bqgA 451 83.25 c.1.11.2,d.54.1.1 29217,38861 1jtkA 136 86.87 c.97.1.1 71862 1piiA 452 89.10 c.1.2.4,c.1.2.4 28559,28563 3d1pA 139 89.63 3me7A 170 89.63