# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 1.09e-17 3gl9A 122 1.31e-17 3dgfC 122 1.71e-17 3f6pA 120 2.74e-17 2zwmA 130 3.54e-17 3cg4A 142 4.49e-17 1u8tA 129 7.18e-17 c.23.1.1 113192 3grcA 140 8.31e-17 2zayA 147 8.34e-17 3lteA 132 9.41e-17 2jbaA 127 1.15e-16 1w25A 459 1.23e-16 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 3crnA 132 1.74e-16 3gwgA 129 2.29e-16 3h1gA 129 2.43e-16 3h1fA 129 2.52e-16 3khtA 144 2.66e-16 3hdgA 137 3.02e-16 3hebA 152 3.09e-16 1kgsA 225 3.11e-16 a.4.6.1,c.23.1.1 68596,68597 2oqrA 230 3.15e-16 2gkgA 127 6.08e-16 2qzjA 136 6.68e-16 2a9oA 120 9.52e-16 c.23.1.1 126444 3c3mA 138 1.11e-15 3cfyA 137 1.46e-15 1xhfA 123 1.48e-15 c.23.1.1 122003 1qkkA 155 1.50e-15 c.23.1.1 31104 1zesA 125 1.51e-15 c.23.1.1 124994 1s8nA 205 1.57e-15 c.23.1.1 105374 3a10A 116 2.15e-15 2qxyA 142 2.35e-15 3hzhA 157 2.43e-15 1ys7A 233 3.17e-15 a.4.6.1,c.23.1.1 123961,123962 1zh2A 121 3.89e-15 c.23.1.1 125069 3chy 128 4.20e-15 1dbwA 126 4.34e-15 c.23.1.1 31095 1b00A 127 4.53e-15 c.23.1.1 31122 2qvgA 143 4.66e-15 1zgzA 122 5.35e-15 c.23.1.1 125065 3hdvA 136 5.40e-15 1srrA 124 7.46e-15 c.23.1.1 31110 3cnbA 143 7.86e-15 1mb3A 124 8.33e-15 c.23.1.1 78907 1yioA 208 9.09e-15 a.4.6.2,c.23.1.1 123326,123327 3h5iA 140 9.71e-15 3luaA 140 1.01e-14 1p2fA 220 1.15e-14 a.4.6.1,c.23.1.1 87720,87721 2pl1A 121 1.15e-14 c.23.1.1 149610 1jbeA 128 1.18e-14 c.23.1.1 62845 1tmyA 120 1.21e-14 c.23.1.1 31083 3eqzA 135 1.58e-14 1mvoA 136 1.76e-14 c.23.1.1 79513 1a04A 215 1.82e-14 a.4.6.2,c.23.1.1 16234,31089 1k68A 140 2.34e-14 c.23.1.1 90943 2rjnA 154 2.50e-14 1i3cA 149 2.63e-14 c.23.1.1 71112 1dz3A 130 3.30e-14 c.23.1.1 31105 3eodA 130 4.70e-14 1u0sY 118 6.43e-14 c.23.1.1 107566 2vuhB 139 7.72e-14 2jk1A 139 7.94e-14 1dcfA 136 8.92e-14 c.23.1.2 31124 1k66A 149 9.67e-14 c.23.1.1 90941 1qo0D 196 1.23e-13 c.23.1.3 31125 2rdmA 132 2.06e-13 2qr3A 140 2.52e-13 3b2nA 133 2.90e-13 3cg0A 140 5.28e-13 2qv0A 143 1.49e-12 3jteA 143 1.71e-12 1oxkB 134 2.57e-12 c.23.1.1 93691 2plnA 137 3.24e-12 3cu5A 141 4.90e-12 3hv2A 153 8.23e-12 3i5aA 334 2.20e-10 3ilhA 146 4.70e-10 3lufA 259 5.37e-10 3i42A 127 5.91e-10 3kcnA 151 7.87e-10 3breA 358 8.92e-10 2qsjA 154 1.17e-09 3kyiB 145 1.30e-09 3ktoA 136 2.08e-09 3c97A 140 6.31e-09 1l3lA 234 2.01e-08 a.4.6.2,d.110.5.1 73541,73542 3cz5A 153 2.84e-08 3f6cA 134 8.47e-08 3eulA 152 2.54e-07 2r25B 133 2.67e-07 c.23.1.1 151530 3kyjB 145 5.40e-06 3memA 457 2.96e-05 2ch4A 320 6.41e-05 b.40.7.1,d.122.1.3 130447,130448 2b4aA 138 0.000639 c.23.1.1 127817 3kloA 225 0.001072 2q0oA 236 0.009194 3gbgA 276 0.02893 3gjyA 317 5.427 3kp1A 763 6.855 1rpxA 230 7.075 c.1.2.2 28536 3cloA 258 8.016 1jq5A 370 10.73 e.22.1.2 67084 1nsjA 205 10.74 c.1.2.4 28560 1jv4A 162 10.86 b.60.1.1 67343 3bp8A 406 11.81 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1xm3A 264 12.23 c.1.31.1 115461 1tqxA 227 17.89 c.1.2.2 112614 3ib0A 345 19.08 2qy9A 309 24.86 a.24.13.1,c.37.1.10 151469,151470 1suvE 345 25.98 i.21.1.1 99011 3e70C 328 34.19 2opjA 327 37.51 2aw5A 541 40.68 3b9qA 302 41.46 1vqoF 120 43.89 d.79.3.1 120368 2ap1A 327 46.48 c.55.1.10,c.55.1.10 127108,127109 3ce9A 354 47.38 1xrsB 262 48.67 c.23.6.1,d.230.4.1 115884,115885 3jy6A 276 49.37 2og2A 359 50.77 1bmtA 246 52.59 a.46.1.1,c.23.6.1 17757,31235 1kq3A 376 53.59 e.22.1.2 68790 1z6rA 406 53.62 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3ertA 261 55.75 a.123.1.1 19292 1pxwA 128 57.05 d.79.3.1 95305 1cp2A 269 59.36 c.37.1.10 32269 2wjvD 97 60.49 3gv0A 288 61.17 3kjxA 344 65.08 1pk5A 248 65.68 a.123.1.1 88139 1o0sA 605 67.14 c.2.1.7,c.58.1.3 86540,86541 2d00A 109 68.46 c.149.1.1 146441 2rgyA 290 68.53 1h1yA 228 69.99 c.1.2.2 76506 1m2eA 135 73.07 c.23.1.5 78478 1zwzA 126 73.26 d.79.3.1 146031 1ymtA 246 73.53 1kw4A 89 77.18 a.60.1.2 73077 3me7A 170 78.24 3kp8A 106 78.63 2q7eA 291 84.34 3kzgA 237 85.91 1y0eA 223 86.57 c.1.2.5 116297