# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3gt7A 154 3.33e-12 1ys7A 233 4.21e-12 a.4.6.1,c.23.1.1 123961,123962 3cg4A 142 6.90e-12 3gl9A 122 1.01e-11 2jbaA 127 1.39e-11 3grcA 140 1.43e-11 3f6pA 120 2.70e-11 2zayA 147 3.21e-11 1u8tA 129 3.84e-11 c.23.1.1 113192 3lteA 132 4.25e-11 3cnbA 143 5.34e-11 1w25A 459 5.59e-11 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 2qzjA 136 6.81e-11 1kgsA 225 7.39e-11 a.4.6.1,c.23.1.1 68596,68597 2zwmA 130 8.03e-11 1mb3A 124 8.71e-11 c.23.1.1 78907 3dgfC 122 1.02e-10 2gkgA 127 1.11e-10 3a10A 116 1.13e-10 3cfyA 137 1.14e-10 1b00A 127 1.30e-10 c.23.1.1 31122 1s8nA 205 1.36e-10 c.23.1.1 105374 1xhfA 123 1.51e-10 c.23.1.1 122003 2pl1A 121 1.56e-10 c.23.1.1 149610 3h5iA 140 1.73e-10 2a9oA 120 1.94e-10 c.23.1.1 126444 1zesA 125 2.04e-10 c.23.1.1 124994 3khtA 144 2.18e-10 1zgzA 122 2.44e-10 c.23.1.1 125065 1dbwA 126 3.02e-10 c.23.1.1 31095 1mvoA 136 3.35e-10 c.23.1.1 79513 1a04A 215 3.67e-10 a.4.6.2,c.23.1.1 16234,31089 3hdgA 137 5.20e-10 2qxyA 142 5.39e-10 3crnA 132 6.21e-10 3gwgA 129 6.55e-10 1srrA 124 6.83e-10 c.23.1.1 31110 1yioA 208 6.93e-10 a.4.6.2,c.23.1.1 123326,123327 3h1gA 129 7.44e-10 3hebA 152 8.47e-10 3h1fA 129 8.57e-10 3chy 128 9.35e-10 1tmyA 120 9.75e-10 c.23.1.1 31083 1zh2A 121 1.08e-09 c.23.1.1 125069 2jk1A 139 1.55e-09 1k68A 140 1.84e-09 c.23.1.1 90943 3hdvA 136 2.05e-09 2vuhB 139 2.15e-09 2oqrA 230 2.60e-09 2rjnA 154 3.04e-09 1qkkA 155 3.04e-09 c.23.1.1 31104 1jbeA 128 3.14e-09 c.23.1.1 62845 2qvgA 143 4.15e-09 1u0sY 118 4.19e-09 c.23.1.1 107566 3c3mA 138 4.57e-09 1p2fA 220 5.60e-09 a.4.6.1,c.23.1.1 87720,87721 2rdmA 132 1.08e-08 1k66A 149 1.10e-08 c.23.1.1 90941 1i3cA 149 1.43e-08 c.23.1.1 71112 3hzhA 157 1.89e-08 3luaA 140 2.02e-08 2qr3A 140 2.94e-08 3cu5A 141 3.22e-08 3eodA 130 4.95e-08 3jteA 143 6.31e-08 3hv2A 153 6.78e-08 3breA 358 8.03e-08 2plnA 137 9.50e-08 1oxkB 134 1.27e-07 c.23.1.1 93691 3i5aA 334 1.69e-07 3b2nA 133 2.46e-07 2qv0A 143 3.03e-07 3eqzA 135 3.23e-07 2qsjA 154 5.30e-07 3i42A 127 5.83e-07 3kcnA 151 8.42e-07 3lufA 259 1.53e-06 1dcfA 136 2.27e-06 c.23.1.2 31124 3cg0A 140 2.46e-06 3cz5A 153 2.89e-06 3ilhA 146 4.65e-06 1dz3A 130 6.95e-06 c.23.1.1 31105 3eulA 152 1.90e-05 2r25B 133 3.30e-05 c.23.1.1 151530 3ktoA 136 3.55e-05 3kyiB 145 3.55e-05 1qo0D 196 9.57e-05 c.23.1.3 31125 3f6cA 134 0.000119 3c97A 140 0.000236 2b4aA 138 0.001657 c.23.1.1 127817 3kyjB 145 0.02290 2yxbA 161 0.4275 1m2eA 135 0.8486 c.23.1.5 78478 1ccwA 137 1.319 c.23.6.1 31238 3kloA 225 1.323 2vycA 755 1.904 3kp1A 763 2.225 1y80A 210 2.838 1xrsB 262 3.165 c.23.6.1,d.230.4.1 115884,115885 1reqA 727 3.502 c.1.19.1,c.23.6.1 29620,31247 5reqA 727 5.621 c.1.19.1,c.23.6.1 29632,31259 3iv7A 364 9.601 2d00A 109 11.80 c.149.1.1 146441 2zyjA 397 12.64 2a0uA 383 16.05 c.124.1.5 146036 2c6uA 122 17.51 1cs1A 386 17.53 c.67.1.3 34399 1gqoA 143 17.83 c.23.13.1 76295 1rkxA 357 18.89 c.2.1.2 97631 1bmtA 246 20.61 a.46.1.1,c.23.6.1 17757,31235 1l3lA 234 21.28 a.4.6.2,d.110.5.1 73541,73542 2ts1 419 22.34 2r3bA 310 23.35 1o1zA 234 23.39 c.1.18.3 86555 3n0lA 417 24.57 3a63A 365 24.90 3cbfA 397 25.47 1c93A 265 25.55 c.1.8.5 28998 1vjoA 393 26.09 c.67.1.3 100827 1qdlB 195 26.91 c.23.16.1 31437 2deoA 230 27.14 3i45A 387 27.36 3menA 362 27.50 1wl8A 189 27.79 c.23.16.1 120997 1n0wA 243 29.71 c.37.1.11 79772 1jq5A 370 30.50 e.22.1.2 67084 1db3A 372 32.03 c.2.1.2 29813 3cpqA 110 32.39 1j3kA 280 32.96 c.71.1.1 84070 1e6uA 321 33.43 c.2.1.2 29805 1r6uA 437 35.09 c.26.1.1 97163 1nmuB 104 38.77 d.79.3.1 80666 3ce9A 354 39.10 2rghA 571 39.22 2aifA 135 40.39 d.79.3.1 146055 3ecdA 425 40.76 3hceA 289 42.88 1thtA 305 43.57 c.69.1.13 34711 2py2A 136 44.44 2aw5A 541 44.62 1o2dA 371 45.02 e.22.1.2 86591 1n2sA 299 47.66 c.2.1.2 79857 2pk3A 321 49.35 1e7sA 321 50.67 c.2.1.2 29806 2x6tA 357 51.03 2hufA 393 51.40 3bc7A 129 52.36 1i7qB 193 52.54 c.23.16.1 61902 1lst 239 53.33 2ggsA 273 56.66 2ywxA 157 57.61 3gl5A 239 57.76 1rrmA 386 59.56 e.22.1.2 105081 2z1yA 397 59.68 3lp8A 442 59.92 3gbxA 420 60.92 3brqA 296 60.99 2tpsA 227 61.57 c.1.3.1 28591 1m33A 258 63.49 c.69.1.26 78514 2fcjA 119 63.64 c.136.1.1 133269 3ix9A 190 63.67 3lwzA 153 64.46 3bx4A 136 64.52 2j13A 247 64.66 c.6.2.3 137934 2b99A 156 65.22 1e7rA 321 66.15 c.2.1.2 29808 2dkjA 407 67.04 3e8sA 227 68.54 2rfvA 398 69.53 1y4iA 398 69.96 c.67.1.3 122619 1t5oA 351 70.57 c.124.1.5 106459 3da1A 561 70.85 2i2xB 258 72.00 3kqgA 182 72.09 1x54A 434 75.56 1o8bA 219 75.70 c.124.1.4,d.58.40.1 81180,81181 3h20A 323 76.73 3hcaA 289 78.44 1t9kA 347 78.47 c.124.1.5 106721 2aeuA 374 80.57 c.67.1.8 126646 3lkbA 392 81.36 3ff7C 112 85.45 1a0rP 245 85.90 c.47.1.6 33054 2rebA 352 86.11 c.37.1.11,d.48.1.1 32282,38767 3hv1A 268 86.18 1xc3A 302 86.19 c.55.1.10,c.55.1.10 115102,115103 3e6gA 400 86.60 2ip1A 432 87.89 1rpnA 335 88.67 c.2.1.2 97708 1ad3A 452 89.07 c.82.1.1 35335 1udcA 338 90.00 c.2.1.2 29785