# TARGET T0634 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0634.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 5985 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.012 0.019 0.002 0.005 0.082 0.880 2 S 0.063 0.070 0.011 0.007 0.399 0.450 3 L 0.163 0.004 0.009 0.005 0.467 0.351 4 K 0.525 0.005 0.011 0.004 0.336 0.119 5 K 0.964 0.009 0.001 0.001 0.015 0.011 6 I 0.986 0.001 0.001 0.001 0.002 0.010 7 L 0.975 0.002 0.001 0.001 0.003 0.021 8 I 0.931 0.002 0.001 0.001 0.010 0.056 9 I 0.524 0.011 0.002 0.001 0.085 0.377 10 D 0.040 0.007 0.002 0.002 0.163 0.787 11 Q 0.003 0.004 0.005 0.009 0.219 0.761 12 Q 0.001 0.001 0.113 0.758 0.104 0.024 13 D 0.001 0.001 0.060 0.864 0.069 0.007 14 F 0.001 0.001 0.024 0.941 0.030 0.004 15 S 0.001 0.001 0.002 0.986 0.008 0.004 16 R 0.001 0.001 0.002 0.983 0.011 0.003 17 I 0.001 0.001 0.002 0.985 0.008 0.002 18 E 0.002 0.001 0.002 0.977 0.012 0.007 19 L 0.001 0.001 0.002 0.982 0.010 0.005 20 K 0.001 0.001 0.001 0.986 0.008 0.005 21 N 0.001 0.001 0.001 0.990 0.005 0.004 22 F 0.001 0.001 0.006 0.970 0.015 0.007 23 L 0.001 0.001 0.015 0.946 0.026 0.012 24 D 0.002 0.001 0.023 0.894 0.051 0.029 25 S 0.003 0.001 0.011 0.801 0.068 0.116 26 E 0.005 0.001 0.001 0.007 0.082 0.905 27 Y 0.127 0.002 0.001 0.002 0.105 0.762 28 L 0.737 0.006 0.001 0.001 0.044 0.211 29 V 0.977 0.002 0.001 0.001 0.004 0.017 30 I 0.979 0.001 0.001 0.001 0.004 0.016 31 E 0.963 0.003 0.001 0.001 0.006 0.028 32 S 0.771 0.007 0.005 0.002 0.075 0.140 33 K 0.168 0.010 0.006 0.005 0.260 0.552 34 N 0.023 0.007 0.002 0.009 0.298 0.661 35 E 0.001 0.001 0.011 0.916 0.053 0.020 36 K 0.001 0.001 0.001 0.984 0.011 0.003 37 E 0.001 0.001 0.001 0.993 0.005 0.001 38 A 0.001 0.001 0.001 0.996 0.002 0.001 39 L 0.001 0.001 0.001 0.997 0.001 0.001 40 E 0.001 0.001 0.001 0.995 0.003 0.001 41 Q 0.001 0.001 0.003 0.993 0.003 0.001 42 I 0.001 0.001 0.005 0.988 0.005 0.002 43 D 0.001 0.001 0.014 0.976 0.007 0.002 44 H 0.001 0.001 0.019 0.909 0.047 0.024 45 H 0.002 0.002 0.023 0.575 0.154 0.244 46 H 0.007 0.003 0.012 0.021 0.372 0.585 47 P 0.033 0.003 0.010 0.003 0.510 0.441 48 D 0.226 0.004 0.014 0.002 0.401 0.353 49 L 0.974 0.001 0.001 0.001 0.010 0.014 50 V 0.996 0.001 0.001 0.001 0.001 0.003 51 I 0.995 0.001 0.001 0.001 0.001 0.004 52 L 0.979 0.001 0.001 0.001 0.003 0.016 53 D 0.728 0.002 0.008 0.001 0.060 0.201 54 M 0.351 0.012 0.042 0.005 0.271 0.319 55 D 0.157 0.026 0.075 0.006 0.415 0.321 56 I 0.087 0.023 0.089 0.004 0.704 0.093 57 I 0.056 0.015 0.059 0.004 0.750 0.117 58 G 0.024 0.012 0.038 0.005 0.848 0.074 59 E 0.015 0.013 0.027 0.021 0.840 0.083 60 N 0.011 0.013 0.011 0.036 0.563 0.365 61 S 0.007 0.007 0.013 0.739 0.165 0.069 62 P 0.001 0.001 0.001 0.989 0.006 0.003 63 N 0.001 0.001 0.001 0.996 0.001 0.001 64 L 0.001 0.001 0.001 0.999 0.001 0.001 65 C 0.001 0.001 0.001 0.999 0.001 0.001 66 L 0.001 0.001 0.001 0.998 0.001 0.001 67 K 0.001 0.001 0.002 0.996 0.001 0.001 68 L 0.001 0.001 0.003 0.994 0.002 0.001 69 K 0.001 0.001 0.004 0.989 0.003 0.003 70 R 0.002 0.001 0.006 0.910 0.027 0.054 71 S 0.003 0.005 0.023 0.333 0.396 0.240 72 K 0.003 0.003 0.027 0.034 0.717 0.215 73 G 0.004 0.007 0.050 0.025 0.832 0.082 74 L 0.008 0.026 0.062 0.008 0.871 0.025 75 K 0.014 0.004 0.035 0.009 0.813 0.125 76 N 0.029 0.010 0.026 0.003 0.652 0.279 77 V 0.110 0.021 0.002 0.002 0.529 0.337 78 P 0.240 0.003 0.001 0.002 0.085 0.669 79 L 0.965 0.008 0.001 0.001 0.004 0.022 80 I 0.988 0.001 0.001 0.001 0.002 0.007 81 L 0.979 0.001 0.001 0.003 0.004 0.012 82 L 0.896 0.003 0.003 0.004 0.022 0.072 83 F 0.644 0.008 0.019 0.010 0.164 0.155 84 S 0.228 0.007 0.051 0.025 0.442 0.247 85 S 0.105 0.016 0.048 0.024 0.569 0.238 86 E 0.036 0.033 0.023 0.024 0.603 0.281 87 H 0.024 0.005 0.012 0.117 0.360 0.482 88 K 0.004 0.001 0.015 0.885 0.072 0.023 89 E 0.003 0.001 0.011 0.924 0.045 0.016 90 A 0.003 0.001 0.007 0.957 0.017 0.016 91 I 0.002 0.001 0.002 0.990 0.002 0.004 92 V 0.001 0.001 0.001 0.994 0.002 0.001 93 N 0.001 0.001 0.001 0.995 0.002 0.001 94 G 0.001 0.001 0.002 0.989 0.005 0.002 95 L 0.001 0.001 0.007 0.981 0.008 0.003 96 H 0.001 0.001 0.008 0.968 0.014 0.008 97 S 0.001 0.002 0.014 0.901 0.029 0.053 98 G 0.012 0.011 0.005 0.054 0.171 0.747 99 A 0.016 0.010 0.029 0.062 0.375 0.509 100 D 0.044 0.010 0.068 0.061 0.570 0.247 101 D 0.244 0.016 0.065 0.047 0.516 0.112 102 Y 0.550 0.023 0.036 0.064 0.223 0.103 103 L 0.532 0.055 0.021 0.064 0.247 0.081 104 T 0.416 0.033 0.017 0.042 0.289 0.203 105 K 0.078 0.004 0.008 0.013 0.435 0.461 106 P 0.029 0.017 0.017 0.011 0.469 0.457 107 F 0.014 0.046 0.019 0.020 0.346 0.555 108 N 0.006 0.022 0.011 0.040 0.218 0.703 109 R 0.001 0.001 0.028 0.941 0.021 0.010 110 N 0.001 0.001 0.006 0.984 0.007 0.003 111 D 0.001 0.001 0.003 0.993 0.003 0.001 112 L 0.001 0.001 0.001 0.998 0.001 0.001 113 L 0.001 0.001 0.001 0.999 0.001 0.001 114 S 0.001 0.001 0.001 0.999 0.001 0.001 115 R 0.001 0.001 0.001 0.999 0.001 0.001 116 I 0.001 0.001 0.001 0.999 0.001 0.001 117 E 0.001 0.001 0.001 0.999 0.001 0.001 118 I 0.001 0.001 0.001 0.998 0.001 0.001 119 H 0.001 0.001 0.001 0.996 0.002 0.002 120 L 0.001 0.001 0.001 0.989 0.005 0.005 121 R 0.001 0.001 0.001 0.939 0.024 0.036 122 T 0.001 0.001 0.001 0.899 0.037 0.063 123 Q 0.001 0.001 0.001 0.846 0.050 0.101 124 N 0.001 0.001 0.005 0.661 0.108 0.224 125 Y 0.002 0.002 0.011 0.716 0.109 0.160 126 Y 0.003 0.002 0.017 0.783 0.103 0.091 127 S 0.004 0.001 0.020 0.780 0.114 0.080 128 D 0.007 0.002 0.026 0.783 0.096 0.086 129 L 0.013 0.006 0.039 0.693 0.123 0.125 130 R 0.018 0.006 0.077 0.650 0.156 0.093 131 K 0.022 0.005 0.079 0.630 0.159 0.106 132 N 0.033 0.009 0.052 0.438 0.248 0.220 133 E 0.040 0.013 0.040 0.261 0.320 0.327 134 G 0.038 0.005 0.024 0.090 0.332 0.510 135 H 0.119 0.027 0.045 0.080 0.333 0.397 136 H 0.312 0.051 0.034 0.048 0.261 0.295 137 H 0.332 0.027 0.023 0.033 0.194 0.390 138 H 0.187 0.023 0.012 0.020 0.182 0.576 139 H 0.082 0.029 0.005 0.019 0.142 0.723 140 H 0.003 0.005 0.001 0.004 0.027 0.961