# List of top-scoring protein chains for T0634.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2zwmA 130 4.35e-22 3f6pA 120 7.75e-22 1mvoA 136 9.30e-22 c.23.1.1 79513 2a9oA 120 4.18e-21 c.23.1.1 126444 1b00A 127 4.98e-21 3chy c.23.1.1 31122 1zesA 125 5.53e-21 c.23.1.1 124994 2gwrA 238 2.90e-20 2jb9A 127 4.53e-20 2jbaA 127 6.46e-20 2jbaB 127 7.36e-20 2oqrA 230 3.13e-19 2wb4A 459 3.61e-19 1w25A 459 3.90e-19 c.23.1.1,c.23.1.1,d.58.29.2 114090,114091,114092 1kgsA 225 7.97e-19 a.4.6.1,c.23.1.1 68596,68597 1ys7A 233 2.13e-18 a.4.6.1,c.23.1.1 123961,123962 1zh2A 121 2.27e-18 c.23.1.1 125069 3gt7A 154 5.68e-18 3dgfC 122 8.06e-18 1xhfA 123 9.11e-18 c.23.1.1 122003 3gl9A 122 1.41e-17 2pl1A 121 2.86e-17 c.23.1.1 149610 1zgzA 122 1.21e-16 c.23.1.1 125065 3c3mA 138 1.16e-15 3fgzA 128 1.21e-15 1dc7A 124 1.22e-15 1dbwA c.23.1.1 31093 3eq2A 394 1.34e-15 3f7nA 128 1.65e-15 3fftA 128 2.40e-15 2qzjA 136 2.82e-15 3a0uA 116 2.89e-15 3a10A 116 2.93e-15 3ffxA 128 3.96e-15 3h1gA 129 4.27e-15 1srrA 124 4.32e-15 1dz3A c.23.1.1 31110 2jvkA 132 4.36e-15 2jvjA 132 4.50e-15 1p2fA 220 4.51e-15 a.4.6.1,c.23.1.1 87720,87721 1mb3A 124 4.99e-15 c.23.1.1 78907 1natA 124 5.23e-15 c.23.1.1 31113 1ab5A 125 5.37e-15 3chy c.23.1.1 31056 1f51E 119 5.51e-15 1dz3A c.23.1.1 31114 1ab6A 125 5.77e-15 3chy c.23.1.1 31054 3ffwA 128 6.09e-15 3gwgA 129 7.98e-15 2jviA 132 8.02e-15 3cg4A 142 9.16e-15 2chyA 128 9.29e-15 c.23.1.1 31081 1ymvA 129 1.04e-14 c.23.1.1 31045 1jbeA 128 1.10e-14 3chy c.23.1.1 62845 1kmiY 129 1.11e-14 c.23.1.1 72751 1cyeA 129 1.11e-14 c.23.1.1 31077 1d4zA 128 1.14e-14 3chy c.23.1.1 31047 2chfA 128 1.14e-14 c.23.1.1 31079 2fmkA 129 1.15e-14 c.23.1.1 133777 2ftkE 124 1.30e-14 c.23.1.1 134069 1mihA 129 1.37e-14 c.23.1.1 84975 1ymuA 130 1.75e-14 3chy c.23.1.1 31066 3crnA 132 1.85e-14 1udrA 129 2.15e-14 3chy c.23.1.1 31041 2ayzA 133 2.51e-14 c.23.1.1 127577 1s8nA 205 2.52e-14 c.23.1.1 105374 5chyA 128 2.79e-14 c.23.1.1 31050 2ayxA 254 2.89e-14 c.23.1.1,c.23.1.6 127574,127575 1e6kA 130 3.32e-14 3chy c.23.1.1 59306 1c4wA 128 3.47e-14 3chy c.23.1.1 31046 1zdmA 129 3.48e-14 c.23.1.1 124941 3h1fA 129 4.08e-14 3breA 358 4.30e-14 1zy2A 150 4.35e-14 c.23.1.1 125811 1ehcA 128 4.50e-14 c.23.1.1 31053 1e6lA 127 4.93e-14 3chy c.23.1.1 59307 3jteA 143 5.53e-14 3i5aA 334 5.56e-14 1vlzA 128 6.41e-14 3chy c.23.1.1 31048 1e6mA 128 6.42e-14 3chy c.23.1.1 31039 3cfyA 137 7.05e-14 1zitA 121 9.15e-14 1tmyA 120 1.03e-13 c.23.1.1 31083 1u8tA 128 1.15e-13 c.23.1.1 113192 1u0sY 118 1.21e-13 c.23.1.1 107566 3lteA 132 1.32e-13 3eodA 130 1.64e-13 6chyA 128 1.71e-13 3chy c.23.1.1 31062 1p6qA 129 1.71e-13 c.23.1.1 104074 2id7A 128 2.13e-13 3hdgA 137 2.86e-13 2zayA 147 3.48e-13 1yioA 208 3.69e-13 a.4.6.2,c.23.1.1 123326,123327 1heyA 128 4.76e-13 c.23.1.1 31061 1ny5A 387 4.78e-13 c.23.1.1,c.37.1.20 92317,92318 1l5zA 155 5.29e-13 c.23.1.1 77722 1qkkA 155 5.54e-13 1dbwA c.23.1.1 31104 2id9A 128 5.74e-13 1a04A 215 7.03e-13 1a04A a.4.6.2,c.23.1.1 16234,31089 1dz3A 130 1.02e-12 1dz3A c.23.1.1 31105 3cnbA 143 3.81e-12 2qxyA 142 3.96e-12 1dbwA 126 5.03e-12 1dbwA c.23.1.1 31095 3dzdA 368 6.45e-12 3lufA 259 7.83e-12 3cz5A 153 8.47e-12 1k68A 140 1.18e-11 c.23.1.1 90943 3cu5A 141 2.53e-11 1k66A 149 3.55e-11 c.23.1.1 90941 1i3cA 149 5.66e-11 c.23.1.1 71112 1jlkA 147 5.70e-11 c.23.1.1 71727 2nt4A 127 6.04e-11 2jk1A 139 6.22e-11 2gkgA 127 6.57e-11 2r25B 133 8.04e-11 c.23.1.1 151530 1oxkB 134 8.53e-11 c.23.1.1 93691 3hebA 152 8.89e-11 3hdvA 136 8.91e-11 3c97A 140 1.18e-10 3h5iA 140 1.46e-10 2vuhB 139 2.13e-10 3khtA 144 2.42e-10 3cg0A 140 2.70e-10 3hzhA 157 2.74e-10 3eulA 152 3.97e-10 3grcA 140 4.02e-10 3b2nA 133 4.95e-10 3kcnA 151 6.38e-10 2nt3A 127 6.88e-10 3c3wA 225 6.95e-10 3f6cA 134 7.11e-10 2qr3A 140 7.16e-10 3hv2A 153 8.52e-10 1a2oA 349 1.91e-09 1chd c.23.1.1,c.40.1.1 31120,32479 2qsjA 154 2.46e-09 2rjnA 154 3.29e-09 3luaA 140 4.72e-09 3cwoX 237 8.68e-09 3kyjB 145 9.45e-09 2qvgA 143 1.12e-08 3kyiB 145 2.17e-08 2qv0A 143 3.14e-08 2plnA 137 3.29e-08 2hqoA 123 4.08e-08 3i42A 127 4.37e-08 2hqrA 223 5.11e-08 3eqzA 135 7.44e-08 1dcfA 136 9.38e-07 1dcfA c.23.1.2 31124 2j48A 119 1.38e-06 2rdmA 132 2.73e-06 3ilhA 146 5.95e-06 2b4aA 138 4.99e-05 c.23.1.1 127817 3ktoA 136 2.03e-04 1h5yA 253 1.19e+00 c.1.2.1 65638 3lgaA 253 2.14e+00 3mb5A 255 2.19e+00 3jvvA 356 2.93e+00 2mobA 138 3.02e+00 1ckv d.137.1.1 41453 3ez7A 398 4.84e+00 3ez2A 398 4.89e+00 2jqoA 108 6.82e+00 3d48R 211 7.36e+00 b.1.2.1,b.1.2.1 157289,157290 1bp3B 211 7.50e+00 1axiB b.1.2.1,b.1.2.1 22031,22032 1qv9A 283 8.00e+00 c.127.1.1 96356 2gjlA 328 8.06e+00 3hi7A 731 8.61e+00 1texA 287 9.04e+00 c.37.1.5 106818 3giuA 215 9.20e+00 1wv9A 94 9.37e+00 3hx8A 129 9.50e+00 2w7qA 204 1.19e+01 2w6rA 266 1.33e+01 2qikA 285 1.34e+01 1mwyA 73 1.45e+01 d.58.17.1 79616 2gmnA 274 1.47e+01 d.157.1.1 147132 1tygA 253 1.60e+01 c.1.31.1 107454 1xm3A 264 1.60e+01 c.1.31.1 115461 3ezfA 403 1.69e+01 2bkaA 242 1.72e+01 c.2.1.2 128666 2qi2A 347 1.73e+01 b.38.4.1,c.55.4.2,d.79.3.2 150800,150801,150802 2d7jA 209 1.77e+01 1wl8A 189 1.88e+01 c.23.16.1 120997 1fi6A 92 2.17e+01 1iq3A a.39.1.6 59849 2v3aA 384 2.26e+01 2forA 323 2.31e+01 3d1pA 139 2.33e+01 1itxA 419 2.41e+01 c.1.8.5,d.26.3.1 71425,71426 3drnA 161 2.44e+01 1w9sA 142 2.46e+01 b.18.1.10 114416 2qkiC 343 2.68e+01 1suiA 247 2.77e+01 c.66.1.1 119049 3dhwA 217 2.78e+01 f.58.1.1 157727 3ms5A 388 2.81e+01 2c3zA 222 2.81e+01 1pv8A 330 2.85e+01 c.1.10.3 95155 1e51A 330 2.85e+01 1b4kA c.1.10.3 59254 1a53A 247 2.88e+01 c.1.2.4 28564 1julA 248 2.88e+01 c.1.2.4 28566 2ekcA 262 2.97e+01 3lx6A 410 3.37e+01 2i07B 915 3.45e+01 2hr0B 915 3.46e+01 2omkA 231 3.47e+01 2h0rA 216 3.50e+01 3me5A 482 3.53e+01 1gpwA 253 3.66e+01 c.1.2.1 65460 3giyA 380 3.67e+01 1p4cA 380 3.68e+01 c.1.4.1 94100 1vlmA 219 3.73e+01 c.66.1.41 108836 3bg9A 718 3.77e+01 3bg3A 718 3.78e+01 2a73B 991 3.93e+01 2dgdA 223 3.96e+01 1rqjA 299 4.01e+01 a.128.1.1 97744 2qs9A 194 4.02e+01 5mdhA 333 4.03e+01 1bmdA c.2.1.5,d.162.1.1 30126,42093 4mdhA 334 4.04e+01 1bmdA c.2.1.5,d.162.1.1 30128,42095 1rqiA 300 4.05e+01 a.128.1.1 97742 3khjA 361 4.09e+01 1vh7A 265 4.12e+01 c.1.2.1 100646 2fddA 100 4.18e+01 3ffsA 400 4.18e+01 1thfD 253 4.20e+01 1thfD c.1.2.1 28535 3llvA 141 4.24e+01 1wbbA 800 4.33e+01 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120837,120838,120839,120840 3h3lA 241 4.34e+01 2rkxA 255 4.40e+01 2j01J 173 4.40e+01 2yv4A 105 4.48e+01 1s2oA 244 4.49e+01 c.108.1.10 118846 2j7pD 283 4.63e+01 a.24.13.1,c.37.1.10 138123,138124 2iylD 284 4.64e+01 a.24.13.1,c.37.1.10 137801,137802 1wbdA 800 4.71e+01 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120841,120842,120843,120844 3cs3A 277 4.76e+01 1tifA 78 4.79e+01 d.15.8.1 37836 2ht6A 174 4.82e+01 1nx9A 652 4.86e+01 b.18.1.13,c.69.1.21 92285,92286 3hojA 248 4.86e+01 2b9vA 652 4.87e+01 b.18.1.13,c.69.1.21 128199,128200 1ryyA 652 4.88e+01 b.18.1.13,c.69.1.21 118821,118822 1rc6A 261 4.90e+01 b.82.1.11 97287 2eyuA 261 5.00e+01 2cjwA 192 5.04e+01 1okkD 303 5.07e+01 a.24.13.1,c.37.1.10 93261,93262 2q9cA 304 5.08e+01 1x66A 98 5.12e+01 1rj9A 304 5.17e+01 a.24.13.1,c.37.1.10 97553,97554 2a0nA 265 5.25e+01 c.1.2.1 125961 3bilA 348 5.39e+01 1s1hB 185 5.45e+01 i.1.1.1 105155 1f6fB 210 5.48e+01 1axiB b.1.2.1,b.1.2.1 22033,22034 3ew3B 221 5.54e+01 3jyvB 193 5.56e+01 2dm6A 333 5.58e+01 b.35.1.2,c.2.1.1 131567,131568 3cbyA 108 5.62e+01 3k0sA 799 5.63e+01 3cbxA 105 5.72e+01 1wb9A 800 5.76e+01 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120833,120834,120835,120836 1qpoA 284 5.79e+01 1qpoA c.1.17.1,d.41.2.1 29561,38597 1iukA 140 5.82e+01 c.2.1.8 83712 1e3mA 800 5.85e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1ng9A 800 5.85e+01 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 80480,80481,80482,80483 2gszA 363 5.87e+01 2ewvA 372 5.88e+01 3lhsA 296 6.00e+01 2flqA 375 6.07e+01 3gm8A 801 6.19e+01 3kbaA 253 6.20e+01 1a28A 256 6.29e+01 1a28A a.123.1.1 19290 3d90A 258 6.35e+01 1sr7A 259 6.38e+01 a.123.1.1 105957 2z6iA 332 6.39e+01 1sqnA 261 6.43e+01 a.123.1.1 105944 2w8yA 260 6.45e+01 3g8oA 263 6.52e+01 3h77A 359 6.52e+01 1izcA 339 6.65e+01 c.1.12.5 83838 2ytuA 128 6.72e+01 3h78A 359 6.97e+01 1r5tA 142 7.01e+01 c.97.1.1 104812 1s6wA 21 7.03e+01 j.3.1.8 112043 3iivA 263 7.16e+01 1m2eA 135 7.29e+01 c.23.1.5 78478 1di6A 195 7.29e+01 1di6A c.57.1.1 33863 1zsvA 349 7.32e+01 1y81A 138 7.33e+01 c.2.1.8 122731 3a75A 384 7.39e+01 2rg8A 165 7.44e+01 2v36A 376 7.45e+01 1ka9H 200 7.75e+01 c.23.16.1 77308 3e8xA 236 7.78e+01 2bekA 257 7.85e+01 1cfzA 162 7.95e+01 1cfzA c.56.1.1 33754