# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lufA 245 7.159e-19 3hv2A 137 3.385e-15 1a04A 206 3.480e-15 1a04A a.4.6.2 16234 c.23.1.1 31089 2gkgA 123 4.790e-15 1zgzA 122 8.809e-15 c.23.1.1 125065 3kcnA 136 9.018e-15 1xhfA 122 1.052e-14 c.23.1.1 122003 2a9oA 118 1.523e-14 c.23.1.1 126444 3f6pA 121 1.523e-14 1zh2A 121 3.461e-14 c.23.1.1 125069 2vuhB 136 3.772e-14 3cloA 259 3.971e-14 2qr3A 122 4.165e-14 1l5zA 147 4.656e-14 c.23.1.1 77722 2qzjA 122 4.963e-14 2rdmA 125 6.049e-14 1a2oA 348 6.051e-14 1chd c.23.1.1 31120 c.40.1.1 32479 2rjnA 136 6.219e-14 3crnA 130 6.605e-14 1k68A 141 6.864e-14 c.23.1.1 90943 3h5iA 126 6.958e-14 3kyjB 129 7.329e-14 2b4aA 117 1.043e-13 c.23.1.1 127817 3khtA 133 1.420e-13 3cfyA 131 1.612e-13 2jk1A 139 1.704e-13 3hzhA 135 1.812e-13 3cz5A 142 1.825e-13 1oxkB 129 2.081e-13 c.23.1.1 93691 3cg0A 127 2.106e-13 2oqrA 227 2.310e-13 3cnbA 125 3.003e-13 2pl1A 122 3.067e-13 c.23.1.1 149610 1yioA 199 4.770e-13 a.4.6.2 123326 c.23.1.1 123327 3hdvA 121 5.049e-13 2qv0A 123 5.185e-13 1dc7A 125 6.269e-13 1dbwA c.23.1.1 31093 3a10A 117 6.619e-13 3jteA 127 6.631e-13 2jbaA 126 7.032e-13 3eulA 124 7.724e-13 3luaA 126 7.777e-13 3gt7A 133 8.509e-13 1zesA 122 9.026e-13 c.23.1.1 124994 3f6cA 130 9.763e-13 1k66A 150 1.003e-12 c.23.1.1 90941 3c97A 121 1.021e-12 1mvoA 122 1.055e-12 c.23.1.1 79513 3b2nA 121 1.178e-12 3c3mA 124 1.319e-12 3cg4A 127 1.352e-12 1ab6A 126 1.366e-12 3chy c.23.1.1 31054 2zwmA 121 1.375e-12 3eqzA 125 1.777e-12 3grcA 126 1.864e-12 2r25B 134 1.905e-12 c.23.1.1 151530 1ab5A 126 2.036e-12 3chy c.23.1.1 31056 1p2fA 218 2.232e-12 a.4.6.1 87720 c.23.1.1 87721 3ktoA 123 2.286e-12 3ilhA 134 2.607e-12 2qxyA 120 2.890e-12 1tmyA 119 2.985e-12 c.23.1.1 31083 3i42A 119 3.015e-12 1u8tA 126 3.416e-12 c.23.1.1 113192 1jbeA 127 3.545e-12 3chy c.23.1.1 62845 3hebA 143 3.832e-12 3lteA 119 5.068e-12 3h1fA 124 5.085e-12 1dz3A 124 5.354e-12 1dz3A c.23.1.1 31105 3dgfC 121 5.880e-12 1i3cA 145 6.787e-12 c.23.1.1 71112 3chy 129 6.910e-12 3chy 2zayA 124 7.323e-12 3gwgA 124 9.023e-12 3h1gA 124 9.542e-12 1kgsA 220 1.072e-11 a.4.6.1 68596 c.23.1.1 68597 2plnA 119 1.232e-11 1w25A 455 1.547e-11 c.23.1.1 114090 c.23.1.1 114091 d.58.29.2 114092 3cu5A 125 1.804e-11 3kloA 218 1.859e-11 1u0sY 119 1.895e-11 c.23.1.1 107566 3gl9A 121 3.106e-11 1mb3A 118 4.225e-11 c.23.1.1 78907 3i5aA 320 4.315e-11 1qkkA 140 4.603e-11 1dbwA c.23.1.1 31104 1ys7A 225 5.673e-11 a.4.6.1 123961 c.23.1.1 123962 2qvgA 130 6.287e-11 2qsjA 121 6.391e-11 1dbwA 124 7.819e-11 1dbwA c.23.1.1 31095 1dcfA 134 1.175e-10 1dcfA c.23.1.2 31124 3hdgA 125 1.422e-10 1s8nA 191 2.098e-10 c.23.1.1 105374 1qo0D 190 3.517e-10 1qo0D c.23.1.3 31125 3breA 323 3.882e-10 1e6mA 129 9.476e-10 3chy c.23.1.1 31039 3eodA 116 1.017e-09 1b00A 123 1.564e-09 3chy c.23.1.1 31122 1srrA 120 3.525e-09 1dz3A c.23.1.1 31110 3gbgA 261 1.292e-04 3memA 454 2.600e-03 2ch4A 321 3.284e-03 b.40.7.1 130447 d.122.1.3 130448 1f9mA 113 1.239e-01 1erv c.47.1.1 32736 1faaA 122 1.600e-01 1erv c.47.1.1 32738 1g7eA 123 5.699e-01 1g7eA c.47.1.7 33055 1senA 135 6.707e-01 c.47.1.1 105465 2vimA 105 8.645e-01 3f3qA 110 9.484e-01 2f51A 112 9.612e-01 1kebA 109 9.836e-01 c.47.1.1 77341 2ifqA 106 9.913e-01 c.47.1.1 137343 2e0qA 105 1.007e+00 2oe3A 107 1.071e+00 2vluA 112 1.141e+00 2vm1A 111 1.160e+00 3d22A 130 1.187e+00 1erv 106 1.375e+00 1erv 3e3eA 106 1.394e+00 3douA 176 1.414e+00 2trxA 109 1.708e+00 1thx c.47.1.1 32719 1r26A 114 1.742e+00 c.47.1.1 96847 1wmjA 123 1.746e+00 3hhvA 104 1.808e+00 2iwtA 109 1.815e+00 1nw2A 106 1.914e+00 c.47.1.1 92215 1dbyA 108 1.931e+00 1thx c.47.1.1 32734 1mejA 202 1.973e+00 c.65.1.1 79029 2j23A 116 2.025e+00 2wz9A 121 2.265e+00 1fb6A 105 2.296e+00 1thx c.47.1.1 32739 1nswA 106 2.614e+00 c.47.1.1 92097 3dieA 107 2.622e+00 2vocA 111 2.643e+00 3d6iA 111 2.846e+00 1v98A 93 2.850e+00 1t00A 113 2.986e+00 2yzuA 105 3.268e+00 3aekA 416 3.419e+00 2rn7A 109 3.533e+00 2i1uA 109 3.705e+00 2i4aA 108 3.987e+00 1meoA 203 4.066e+00 c.65.1.1 79035 1ep8A 113 4.351e+00 c.47.1.1 64907 2bw0A 310 4.527e+00 b.46.1.1 129303 c.65.1.1 129304 2fwhA 118 4.587e+00 c.47.1.1 134242 3fk8A 132 4.870e+00 2blnA 299 5.257e+00 b.46.1.1 128734 c.65.1.1 128735 1aiu 106 5.260e+00 1erv 2dj0A 138 5.321e+00 1thx 109 5.440e+00 1thx 1w4vA 111 5.446e+00 3iosA 135 5.520e+00 3cxgA 123 5.777e+00 2vwsA 257 5.791e+00 2qx2A 319 5.925e+00 1ovnA 230 6.044e+00 a.71.1.1 93602 c.47.1.7 93603 3hz4A 121 6.963e+00 2cvkA 106 7.259e+00 2pptA 150 7.474e+00 1a8l 227 7.710e+00 1a8l 2h30A 152 7.773e+00 2flsA 102 7.825e+00 1uc7A 125 8.070e+00 c.47.1.1 99163 3kcqA 208 8.072e+00 3mszA 87 8.135e+00 2b1kA 150 8.175e+00 3glvA 123 8.350e+00 1l7aA 319 8.369e+00 c.69.1.25 77772 3hxsA 118 8.694e+00 3kyiB 105 8.728e+00 3c85A 151 8.889e+00 1f0kA 352 9.062e+00 1f0kA c.87.1.2 35465 1kngA 145 9.376e+00 c.47.1.10 72777 3lgcA 90 9.411e+00 1erw 106 9.458e+00 1erv 2pu9C 112 9.466e+00 1vh7A 251 1.098e+01 c.1.2.1 100646 3cniA 146 1.100e+01 2ht9A 105 1.101e+01 1fmtA 309 1.150e+01 1fmtA b.46.1.1 25758 c.65.1.1 34174 2cxhA 181 1.174e+01 c.51.1.2 131005 2yyyA 343 1.174e+01 2kucA 122 1.200e+01 1sxjC 323 1.222e+01 a.80.1.1 106085 c.37.1.20 106086 2kiqA 58 1.244e+01 1sxjA 442 1.292e+01 a.80.1.1 106081 c.37.1.20 106082 1nf5B 273 1.306e+01 c.68.1.2 80454 1nmmB 273 1.350e+01 c.68.1.2 80662 2jacA 109 1.456e+01 2hy1A 228 1.459e+01 d.159.1.11 147437 1thxA 109 1.547e+01 c.47.1.1 32732 2af4C 333 1.569e+01 c.77.1.5 126656 1kte 106 1.571e+01 1kte 1thfD 254 1.573e+01 1thfD c.1.2.1 28535 3gr0A 187 1.586e+01 1i78A 298 1.598e+01 f.4.4.1 66046 3ib5A 343 1.667e+01 2nxfA 315 1.707e+01 d.159.1.12 148499 2ywrA 217 1.713e+01 1f7lA 119 1.778e+01 1f7lA d.150.1.2 59666 3da8A 214 1.791e+01 1nmuB 105 1.848e+01 d.79.3.1 80666 2qvpA 267 1.850e+01 1rjdA 329 1.906e+01 c.66.1.37 97558 1m1nB 523 1.930e+01 c.92.2.3 78418 3gnjA 112 1.936e+01 1ffkI 195 2.031e+01 1ffkI d.12.1.2 37494 2dj5A 127 2.034e+01 c.92.1.3 131536 1p3qQ 46 2.056e+01 a.5.2.4 87748 1f7tA 120 2.086e+01 1f7lA d.150.1.2 59667 1ds6B 180 2.117e+01 1rhoA b.1.18.8 21898 1djxA 514 2.120e+01 1djxB a.39.1.7 17342 b.7.1.1 23159 c.1.18.1 29587 2yw2A 424 2.137e+01 1zzoA 135 2.144e+01 c.47.1.10 125913 2v5jA 269 2.188e+01 3eviA 119 2.204e+01 1h1lA 479 2.237e+01 c.92.2.3 70851 1qk8A 144 2.240e+01 1ewxA c.47.1.10 33061 1i5gA 145 2.259e+01 1ewxA c.47.1.10 61784 2iacA 133 2.307e+01 1xb3A 129 2.313e+01 b.6.1.1 115060 3n2qA 283 2.318e+01 2i5yM 27 2.326e+01 k.23.1.2 145504 3k8nA 154 2.375e+01 1awiA 139 2.396e+01 1pne d.110.1.1 40871 3nulA 131 2.416e+01 d.110.1.1 40891 1pkhA 183 2.423e+01 b.85.4.1 94832 1gmxA 109 2.457e+01 c.46.1.3 65355 3bedA 133 2.468e+01 c.54.1.1 155183 1jfuA 177 2.491e+01 c.47.1.10 62940 2wwbC 37 2.513e+01 2eb0A 305 2.517e+01 1a4aA 130 2.547e+01 1nwpA b.6.1.1 22907 1jb7B 217 2.588e+01 1otcB b.40.4.3 62839 2hzfA 111 2.645e+01 3k0aA 507 2.653e+01 1wv9A 88 2.666e+01 1z5yE 137 2.667e+01 c.47.1.10 124498 2oxgB 111 2.694e+01 3devA 317 2.710e+01 1pqnA 128 2.723e+01 c.47.1.8 95025 1ass 153 2.734e+01 1a6dA 1jzgA 129 2.736e+01 b.6.1.1 67855 1eiwA 112 2.748e+01 1eiwA c.23.3.1 31130 1g7oA 216 2.769e+01 1g7oA a.45.1.1 60332 c.47.1.5 60333 2ztsA 217 2.811e+01 3gr1A 196 2.832e+01 2qsfX 105 2.854e+01 2hmvA 140 2.939e+01 c.2.1.9 136615 2yrxA 421 2.945e+01 1oq1A 224 3.013e+01 b.29.1.17 93408 2kw7A 158 3.035e+01 1fo5A 86 3.075e+01 1fo5A c.47.1.1 59922 1s3iA 308 3.124e+01 b.46.1.1 98435 c.65.1.1 98436 1xg0C 175 3.179e+01 a.1.1.3 115275 1ewxA 145 3.239e+01 1ewxA c.47.1.10 33062 3hutA 347 3.254e+01 3i5cA 197 3.289e+01 1grx 86 3.302e+01 1kte 1qgvA 131 3.315e+01 1qgvA c.47.1.8 33056 1rylA 158 3.351e+01 d.276.1.1 105124 3ia1A 144 3.396e+01 1pdo 130 3.435e+01 1pdo 1j08A 226 3.475e+01 c.47.1.2 83855 c.47.1.2 83856 3ga4A 157 3.506e+01 1b4qA 106 3.547e+01 1kte c.47.1.1 32773 2vy9A 116 3.601e+01 1j7nA 726 3.644e+01 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 1gh2A 108 3.655e+01 1erv c.47.1.1 60515 1lu4A 135 3.671e+01 c.47.1.10 91124 1assA 153 3.729e+01 c.8.5.2 30818 1jkxA 210 3.750e+01 c.65.1.1 66813 4mbp 371 3.754e+01 4mbp 1qh8A 479 3.775e+01 1qguA c.92.2.3 35633 2chgA 224 3.799e+01 2zdjA 70 3.910e+01 3bhwA 183 3.936e+01 2a14A 258 3.946e+01 c.66.1.15 125972 1cc3A 131 3.978e+01 1nwpA b.6.1.1 23008