# List of top-scoring protein chains for T0632.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sc0A 138 7.27e-16 d.38.1.5 98796 2b6eA 146 7.27e-16 d.38.1.5 127986 1vh5A 148 8.64e-15 d.38.1.5 100642 1sbkA 144 1.22e-14 d.38.1.5 98791 1zkiA 133 1.69e-14 d.38.1.5 125199 1vh9A 149 2.78e-14 d.38.1.5 100653 3e1eA 141 7.96e-14 3dkzA 142 9.23e-14 1psuA 140 1.15e-13 d.38.1.5 88285 2fs2A 151 1.16e-13 d.38.1.5 134003 2h4uA 145 4.00e-13 d.38.1.5 136082 3f5oA 148 4.43e-13 3f1tA 148 7.77e-13 3e29A 144 9.91e-13 2cy9A 140 1.11e-12 d.38.1.5 131019 3e8pA 164 1.27e-12 1wluA 136 1.66e-12 d.38.1.5 121015 2pimA 141 3.62e-12 2dslA 136 3.86e-12 1q4uA 151 1.99e-11 d.38.1.5 95828 2ov9A 216 2.51e-11 d.38.1.5 149034 3hduA 157 1.17e-10 2hboA 158 3.40e-10 d.38.1.5 136319 1yocA 147 7.53e-10 d.38.1.5 123778 2qwzA 159 1.79e-09 3gekA 146 2.05e-09 2prxA 160 5.51e-09 1sh8A 154 3.09e-07 d.38.1.5 105549 1ixlA 131 3.28e-07 d.38.1.5 90717 2eisA 133 9.06e-07 2gvhA 288 7.43e-06 d.38.1.1,d.38.1.1 135776,135777 3d6lA 137 8.44e-06 1yliA 153 1.11e-05 d.38.1.1 123651 2qq2A 193 3.00e-05 2q2bA 179 3.28e-05 1vpmA 169 3.68e-05 d.38.1.1 113967 3bjkA 153 1.35e-04 3kviA 139 3.97e-04 3lwgA 145 4.37e-04 1njkA 156 6.37e-04 d.38.1.1 85818 2cyeA 133 6.39e-04 d.38.1.1 131021 3lw3A 145 7.09e-04 1y7uA 174 8.55e-04 d.38.1.1 122722 3kuvA 139 1.03e-03 1t82A 155 1.22e-03 d.38.1.5 106639 3kv7A 139 1.52e-03 3lmbA 165 1.62e-03 2cwzA 141 3.63e-03 d.38.1.7 130961 1u1zA 168 6.55e-03 d.38.1.6 107602 3k67A 159 8.63e-03 2v1oA 151 9.84e-03 3bbjA 272 1.52e-02 3b7kA 333 1.53e-02 2f41A 121 4.38e-02 d.38.1.5 132904 3ir3A 148 4.49e-02 2f3xA 157 4.59e-02 d.38.1.5 132901 1q6wA 161 4.81e-02 d.38.1.4 96000 3d6xA 146 4.88e-02 3ck1A 150 4.96e-02 1s5uA 138 5.87e-02 d.38.1.1 98573 2oiwA 136 1.11e-01 d.38.1.1 148794 2fujA 137 1.16e-01 d.38.1.1 134175 1z54A 132 1.59e-01 d.38.1.1 124450 2oafA 151 4.72e-01 d.38.1.1 148695 3hm0A 167 6.29e-01 1c8uA 285 6.33e-01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1iq6A 134 7.30e-01 d.38.1.4 76755 2gllA 171 9.00e-01 3dp1A 159 1.04e+00 2glvA 171 1.09e+00 3kg8A 308 1.10e+00 3cjyA 259 2.28e+00 1oypA 245 2.45e+00 d.14.1.4,d.101.1.1 93734,93735 1oysA 245 2.53e+00 d.14.1.4,d.101.1.1 93758,93759 2av9A 147 2.69e+00 d.38.1.1 127365 2o5uA 148 2.70e+00 d.38.1.1 148616 2o6tA 149 2.72e+00 d.38.1.1 148637 2rhrA 277 3.37e+00 3csdA 281 3.39e+00 1f80A 120 3.78e+00 1f7lA d.150.1.2 59683 1f7lA 121 4.30e+00 1f7lA d.150.1.2 59666 1f7tA 122 4.53e+00 1f7lA d.150.1.2 59667 2hljA 157 5.30e+00 d.38.1.1 136570 1z6bA 154 5.39e+00 d.38.1.6 124510 3exzA 154 6.25e+00 2gf6A 135 6.31e+00 d.38.1.1 135077 2ielA 138 7.58e+00 c.26.2.4 147649 1x7gA 261 8.40e+00 c.2.1.2 114929 3bnvA 152 8.73e+00 2rhcA 277 8.92e+00 c.2.1.2 152048 1w4zA 281 8.97e+00 c.2.1.2 114195 1bykA 255 1.11e+01 1bykA c.93.1.1 35706 3hctA 118 1.14e+01 2pzhA 135 1.19e+01 2w2dB 431 1.28e+01 2ownA 262 1.39e+01 d.38.1.8,d.38.1.8 149045,149046 1zba3 221 1.39e+01 2c2iA 151 1.47e+01 d.38.1.4 129670 3hykA 122 1.64e+01 3b49A 211 1.71e+01 2q78A 153 1.87e+01 d.38.1.7 150076 3dd6A 255 1.99e+01 2dp9A 124 2.11e+01 b.122.1.5 131609 1sy7A 715 2.34e+01 c.23.16.3 112161 1wk2A 121 2.55e+01 b.122.1.5 114720 2yxlA 450 2.62e+01 3esiA 129 2.65e+01 1llnA 262 2.66e+01 d.165.1.1 84625 1qwgA 251 2.76e+01 c.1.27.1 96473 1oc2A 348 2.77e+01 c.2.1.2 92765 3gklA 141 2.77e+01 3khpA 311 2.78e+01 1udsA 255 3.05e+01 d.14.1.4,d.101.1.1 99219,99220 3fm3A 358 3.27e+01 1udoA 255 3.29e+01 d.14.1.4,d.101.1.1 99215,99216 1udnA 255 3.42e+01 d.14.1.4,d.101.1.1 99213,99214 2ffsA 157 3.45e+01 d.129.3.7 133391 3bgaA 1010 3.56e+01 3fldA 153 3.62e+01 2kgtA 72 3.70e+01 1v9jA 113 3.71e+01 d.52.6.1 100542 1n7dA 699 4.02e+01 b.68.5.1,g.3.11.1,g.3.11.1,g.3.11.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1 80236,80237,80238,80239,80240,80241,80242,80243,80244,80245 1zhgA 139 4.07e+01 d.38.1.6 125093 2nyyA 1295 4.09e+01 1pt3A 128 4.20e+01 d.4.1.1 95087 2jazB 131 4.21e+01 d.4.1.1 145679 1m08A 131 4.24e+01 d.4.1.1 78330 1mz8B 131 4.25e+01 d.4.1.1 79684 2jbgB 131 4.32e+01 d.4.1.1 145681 1z6rA 406 4.33e+01 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2jb0B 131 4.40e+01 d.4.1.1 138247 2fmlA 273 4.78e+01 a.4.5.68,d.113.1.6 133778,133779 1fgjA 546 4.93e+01 1fgjA a.138.1.3 19679 7ceiB 206 5.09e+01 1bxiB d.4.1.1 37134 2ivhA 128 5.28e+01 3fbdA 132 5.59e+01 2conA 79 5.69e+01 g.41.15.1 130680 2wjnH 258 5.95e+01 3g7fH 258 6.10e+01 1znvB 134 6.12e+01 1g0hA 252 6.14e+01 1dk4A e.7.1.1 60171 1ys5A 164 6.19e+01 f.4.1.3 123956 3d6nA 422 6.45e+01 1hr0W 71 6.53e+01 1ah9 b.40.4.5 25329 1v1aA 309 6.59e+01 c.72.1.1 100249 1a0dA 440 6.59e+01 1a0cA c.1.15.3 29533 1dctA 324 6.60e+01 6mhtA c.66.1.26 34244 2hx5A 152 6.77e+01 d.38.1.1 136837 2h8qA 217 7.11e+01 1htlA 191 7.21e+01 1lt3A d.166.1.1 42237 1i6aA 219 7.21e+01 c.94.1.1 61827 1udqA 255 7.40e+01 d.14.1.4,d.101.1.1 99217,99218 1fx2A 235 7.52e+01 1fx2A d.58.29.1 39430 2boyA 254 7.55e+01 2qs8A 418 7.63e+01 b.92.1.9,c.1.9.18 151311,151312 2okiA 136 7.64e+01 1kjqA 391 7.73e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1eyzA 392 7.73e+01 1ez1A b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1xcaA 137 7.77e+01 1hmt b.60.1.2 27205 3efzA 268 7.99e+01 a.118.7.1 158144