# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o0iA 138 1.57e-21 d.38.1.5 86532 2b6eA 146 2.35e-21 d.38.1.5 127986 1sc0A 138 3.11e-21 d.38.1.5 98796 1vh5A 148 1.34e-20 d.38.1.5 100642 1zkiA 133 2.27e-19 d.38.1.5 125199 3e1eA 141 2.05e-18 2f0xA 148 2.19e-18 d.38.1.5 132673 3f5oA 148 2.72e-18 2fs2A 151 2.84e-18 d.38.1.5 134003 2h4uA 145 3.77e-18 d.38.1.5 136082 1psuA 140 5.59e-18 d.38.1.5 88285 3dkzA 142 1.05e-17 3f1tA 148 4.41e-17 2pimA 141 5.45e-17 3e29A 144 7.69e-17 1q4uA 151 1.08e-16 d.38.1.5 95828 1wluA 136 2.25e-16 d.38.1.5 121015 3e8pA 164 3.11e-16 1j1yA 136 4.18e-16 d.38.1.5 90776 2cy9A 140 4.59e-16 d.38.1.5 131019 2ov9A 216 7.08e-16 d.38.1.5 149034 3hduA 157 6.81e-15 1yocA 147 2.03e-14 d.38.1.5 123778 2hboA 158 8.87e-14 d.38.1.5 136319 3gekA 146 1.01e-13 2prxA 160 1.92e-11 1ixlA 131 2.16e-11 d.38.1.5 90717 1sh8A 154 3.78e-11 d.38.1.5 105549 2eisA 133 1.45e-10 2qq2A 193 1.92e-08 1t82A 155 5.02e-08 d.38.1.5 106639 1yliA 153 5.28e-08 d.38.1.1 123651 3bjkA 153 6.57e-08 2q2bA 179 8.38e-08 3lwgA 145 9.60e-08 1u1zA 168 1.02e-07 d.38.1.6 107602 3kuvA 139 1.18e-07 1vpmA 169 1.90e-07 d.38.1.1 113967 3b7kA 333 2.30e-07 3lw3A 145 2.31e-07 2cyeA 133 3.08e-07 d.38.1.1 131021 2gllA 171 4.38e-07 1njkA 156 4.95e-07 d.38.1.1 85818 2cwzA 141 6.29e-07 d.38.1.7 130961 2gvhA 288 9.09e-07 d.38.1.1,d.38.1.1 135776,135777 3lmbA 165 1.88e-06 1z54A 132 3.75e-06 d.38.1.1 124450 2fujA 137 7.42e-06 d.38.1.1 134175 3kg8A 308 7.54e-06 2oiwA 136 8.94e-06 d.38.1.1 148794 3ir3A 148 9.59e-06 2v1oA 151 1.09e-05 3bbjA 272 3.41e-05 2b3nA 159 3.73e-05 d.38.1.4 127792 3k67A 159 3.74e-05 3ck1A 150 4.77e-05 2o5uA 148 5.08e-05 d.38.1.1 148616 2av9A 147 5.37e-05 d.38.1.1 127365 1s5uA 138 7.00e-05 d.38.1.1 98573 2oafA 151 1.55e-04 d.38.1.1 148695 1iq6A 134 3.42e-04 d.38.1.4 76755 2aliA 158 3.96e-04 d.38.1.1 126976 2hljA 157 4.57e-04 d.38.1.1 136570 3cjyA 259 7.34e-04 2f41A 121 9.43e-04 d.38.1.5 132904 1c8uA 285 1.36e-03 1c8uA d.38.1.3,d.38.1.3 38547,38548 1z6bA 154 1.50e-03 d.38.1.6 124510 3esiA 129 1.51e-03 3hm0A 167 2.08e-03 3kg9A 296 3.19e-03 3exzA 154 3.31e-03 2gf6A 135 4.61e-03 d.38.1.1 135077 2essA 248 8.70e-03 d.38.1.8,d.38.1.8 132346,132347 3bnvA 152 8.83e-03 2pzhA 135 1.04e-02 2ownA 262 1.18e-02 d.38.1.8,d.38.1.8 149045,149046 2egjA 128 1.19e-02 2hx5A 152 1.61e-02 d.38.1.1 136837 1bvqA 141 1.77e-02 1bvqA d.38.1.1 38542 1lo7A 141 1.91e-02 d.38.1.1 74144 2nujA 163 1.97e-02 d.38.1.1 138608 1tbuA 118 2.52e-02 d.38.1.3 119223 2q78A 153 2.91e-02 d.38.1.7 150076 1mkaA 171 3.73e-02 1mkaA d.38.1.2 38543 2w3xA 147 3.90e-02 2c2iA 151 7.39e-02 d.38.1.4 129670 2bi0A 337 2.46e-01 d.38.1.4,d.38.1.4 128565,128566 1q52A 314 2.76e-01 c.14.1.3 95846 1yycA 174 3.92e-01 3khpA 311 4.76e-01 3el6A 313 1.23e+00 1g0dA 695 1.91e+00 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2vw9A 134 2.75e+00 3fldA 153 3.67e+00 3hnqA 144 4.55e+00 2w0mA 235 4.62e+00 2jkgA 179 5.05e+00 2fhxA 246 5.25e+00 3b49A 211 5.26e+00 1zo2A 129 5.84e+00 d.17.4.2 146021 3dkcA 317 6.83e+00 3ijfX 133 7.00e+00 3lq8A 302 7.08e+00 2a15A 139 7.55e+00 d.17.4.3 125973 3hn3A 613 7.58e+00 3dczA 207 8.26e+00 2fs6A 137 8.27e+00 b.60.1.2 134005 2g7bA 137 8.89e+00 3bgaA 1010 9.48e+00 1bhgA 613 9.98e+00 1bhgA b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1f3uA 118 1.02e+01 1f3uA b.65.1.1 27521 2f57A 317 1.04e+01 3lk41 286 1.05e+01 1n3gA 113 1.20e+01 d.204.1.1 79962 1tjgH 237 1.23e+01 b.1.1.1,b.1.1.2 112446,112447 1h2iA 209 1.23e+01 d.50.1.3 76550 3f95A 193 1.35e+01 2dj5A 133 1.37e+01 c.92.1.3 131536 2fhfA 1083 1.38e+01 b.1.18.2,b.1.18.2,b.3.1.3,b.71.1.1,c.1.8.1 147035,147036,147037,147038,147039 3huhA 152 1.41e+01 1kjqA 391 1.46e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1eyzA 392 1.47e+01 1ez1A b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 3cebA 194 1.50e+01 3hvnA 508 1.50e+01 2f5bH 235 1.52e+01 b.1.1.1,b.1.1.2 88506,88507 2gr8A 99 1.52e+01 d.24.1.4 135522 3cox 507 1.55e+01 1b8sA 3coxA 507 1.55e+01 c.3.1.2,d.16.1.1 30332,37863 1gmiA 136 1.56e+01 b.7.1.1 65309 1w9hA 427 1.64e+01 c.55.3.10 120785 3cdzA 754 1.65e+01 2kdyA 261 1.76e+01 2p2sA 336 1.79e+01 1q7lA 198 1.80e+01 c.56.5.4 96044 3fxtA 113 1.80e+01 3ey8A 133 1.81e+01 2aqpA 164 1.90e+01 3kldA 384 1.93e+01 3g4pA 244 1.94e+01 1ez1A 392 1.97e+01 1ez1A b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 2alzA 390 1.98e+01 d.240.1.1,e.8.1.7 126994,126995 3gd7A 390 2.02e+01 3fv7A 244 2.05e+01 3laoA 258 2.15e+01 3bwlA 126 2.17e+01 2w1vA 276 2.19e+01 1voqa 90 2.29e+01 2jc7A 244 2.30e+01 1l4sA 112 2.32e+01 d.204.1.1 77693 1t3tA 1303 2.43e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 2aqqA 164 2.44e+01 2dznB 82 2.45e+01 1kt6A 183 2.46e+01 b.60.1.1 84466 2pi0A 116 2.52e+01 a.4.5.23 149489 3lifA 254 2.58e+01 1b8sA 504 2.62e+01 1b8sA c.3.1.2,d.16.1.1 30335,37866 1xeuA 263 2.72e+01 1kn0A 212 2.73e+01 d.50.1.3 77444 1x9nA 688 2.74e+01 a.235.1.1,b.40.4.6,d.142.2.1 115002,115003,115004 2jksA 315 2.84e+01 1ijhA 504 2.89e+01 c.3.1.2,d.16.1.1 66161,66162 2np9A 440 3.02e+01 3gb2A 353 3.07e+01 1n4wA 504 3.09e+01 c.3.1.2,d.16.1.1 91676,91677 1i5pA 633 3.16e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 3bghA 236 3.18e+01 1iznA 286 3.22e+01 e.43.1.1 83847 1pvgA 418 3.22e+01 d.14.1.3,d.122.1.2 95161,95162 2w42A 427 3.30e+01 2conA 79 3.33e+01 g.41.15.1 130680 2owpA 129 3.35e+01 d.17.4.18 149049 1b4vA 504 3.36e+01 1b8sA c.3.1.2,d.16.1.1 30334,37865 1vrbA 342 3.36e+01 b.82.2.11 120450 3htyA 94 3.42e+01 3mtxA 151 3.50e+01 1aqb 183 3.54e+01 1aqb 2oklA 185 3.56e+01 1qzrA 418 3.61e+01 d.14.1.3,d.122.1.2 96659,96660 2py5A 575 3.62e+01 c.55.3.5,e.8.1.1 149928,149929 2iiaA 131 3.70e+01 3kg7A 293 3.72e+01 1wnhA 225 3.74e+01 3brbA 313 3.75e+01 1j1bA 420 3.80e+01 d.144.1.7 90758 1o9yA 84 3.81e+01 b.139.1.1 92692 1u6mA 199 3.84e+01 d.108.1.1 113069 3kl2A 226 3.87e+01 3kqfA 265 3.87e+01 2rh7A 239 3.89e+01 d.22.1.1 152030 2j5gA 263 4.06e+01 1txkA 498 4.07e+01 b.1.18.2,b.30.5.9 107425,107426 1uj6A 227 4.08e+01 c.124.1.4,d.58.40.1 107898,107899 3dg6A 367 4.09e+01 3g6xA 420 4.10e+01 1r3eA 309 4.27e+01 b.122.1.1,d.265.1.2 96907,96908 3c96A 415 4.43e+01 c.3.1.2,d.16.1.2 156122,156123 1kkhA 317 4.45e+01 d.14.1.5,d.58.26.3 72645,72646 2jmkA 111 4.45e+01 1b8aA 438 4.45e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 3mmhA 167 4.50e+01 2b59A 187 4.51e+01 b.2.2.2 127879 1tp6A 128 4.54e+01 d.17.4.12 107184 3fbuA 168 4.58e+01 2fibA 269 4.58e+01 3fib d.171.1.1 42457 1ohpA 125 4.62e+01 d.17.4.3 118702 2w80C 253 4.72e+01 2r6iA 284 4.72e+01 d.381.1.1 151612 2vgoA 284 4.78e+01 2c92A 160 4.79e+01 3ip3A 337 4.80e+01 2pwyA 258 4.80e+01 2ivwA 113 4.94e+01 2vgpA 284 4.98e+01 3fib 249 5.13e+01 3fib 3fibA 249 5.13e+01 d.171.1.1 42455 2bfxA 284 5.14e+01 3mpzA 150 5.15e+01 3dy0A 336 5.18e+01 2bo9B 222 5.22e+01 d.17.1.5,d.17.1.5 128898,128899 2f96A 224 5.24e+01 c.55.3.5 133153 3i2kA 587 5.26e+01 2j0iA 303 5.31e+01 3jxsA 174 5.32e+01 1ju3A 583 5.41e+01 b.18.1.13,c.69.1.21 67300,67301 1vz6A 393 5.43e+01 d.154.1.2 108949 1o0wA 252 5.44e+01 a.149.1.1,d.50.1.1 80751,80752 2x4zA 296 5.48e+01 2k75A 106 5.48e+01 2i9wA 184 5.56e+01 d.17.4.30,g.74.1.1,g.74.1.1 147576,147577,147578 2p4oA 306 5.57e+01 b.68.6.3 149216 1k42A 168 5.61e+01 b.18.1.14 72032 1c44A 123 5.73e+01 1qndA d.106.1.1 40795 3bmzA 199 5.76e+01 2qq5A 260 5.86e+01 2r7eA 742 5.87e+01 1pczA 191 5.88e+01 1ytbA d.129.1.1,d.129.1.1 41292,41293 1w6nA 134 5.91e+01 b.29.1.3 114275 1xnb 185 6.01e+01 1axkA 3ih8A 456 6.13e+01 2anuA 255 6.39e+01 c.6.3.1 127058 1jhdA 396 6.41e+01 b.122.1.3,c.26.1.5 66712,66713 2yvyA 278 6.44e+01 1nox 205 6.45e+01 1nox 1noxA 205 6.45e+01 d.90.1.1 40242 3ihlA 282 6.49e+01 1ocvA 125 6.54e+01 d.17.4.3 86810 3cfxA 296 6.60e+01 2f4lA 297 6.63e+01 b.23.3.1 132927 3h4dA 390 6.72e+01 2ovrB 445 6.73e+01 a.158.1.1,b.69.4.1 145735,145736 3g0bA 740 6.81e+01 3hacA 728 6.86e+01 1tu1A 148 6.89e+01 d.107.1.3 107316 3dlcA 219 6.90e+01 2r78A 117 6.92e+01 1sltA 134 7.00e+01 1c1lA b.29.1.3 24186 2pfcA 183 7.01e+01 2bm3A 166 7.02e+01 b.2.2.2 128762 3h40A 389 7.04e+01 3dnmA 336 7.16e+01 1sq9A 397 7.18e+01 b.69.4.1 105889 3bmbA 136 7.19e+01 2x0lA 734 7.21e+01 1kk1A 410 7.22e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 2icgA 160 7.36e+01 d.369.1.1 147601 1p6pA 125 7.39e+01 b.60.1.2 87839 3dxoA 121 7.42e+01 d.17.4.19 157933 1qlmA 316 7.44e+01 1qlmA d.147.1.1 41765 1yi9A 309 7.46e+01 b.121.1.2,b.121.1.2 123276,123277 1hbq 183 7.48e+01 1aqb 2c5uA 375 7.52e+01 1h6tA 291 7.55e+01 b.1.18.15,c.10.2.1 65686,65687 3dlrA 202 7.56e+01 1q7fA 286 7.57e+01 b.68.9.1 96036 3ggnA 155 7.61e+01 3if5A 456 7.67e+01 1v4sA 455 7.72e+01 c.55.1.3,c.55.1.3 100309,100310 1kopA 223 7.91e+01 2cba b.74.1.1 27966 3kspA 129 7.98e+01 1jhjA 171 7.99e+01 b.18.1.9 66714