# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b6eA 146 9.09e-17 d.38.1.5 127986 1o0iA 138 1.07e-16 d.38.1.5 86532 1sc0A 138 1.14e-16 d.38.1.5 98796 1vh5A 148 4.14e-16 d.38.1.5 100642 1zkiA 133 5.42e-15 d.38.1.5 125199 3e1eA 141 1.62e-14 2fs2A 151 1.93e-14 d.38.1.5 134003 1psuA 140 2.04e-14 d.38.1.5 88285 2h4uA 145 5.17e-14 d.38.1.5 136082 2f0xA 148 5.26e-14 d.38.1.5 132673 3f5oA 148 5.49e-14 3dkzA 142 7.02e-14 3f1tA 148 1.59e-13 3e8pA 164 1.79e-13 3e29A 144 2.73e-13 1wluA 136 3.78e-13 d.38.1.5 121015 1j1yA 136 3.86e-13 d.38.1.5 90776 2pimA 141 5.08e-13 2cy9A 140 6.56e-13 d.38.1.5 131019 2ov9A 216 8.43e-13 d.38.1.5 149034 1q4uA 151 9.36e-13 d.38.1.5 95828 3hduA 157 5.71e-12 2hboA 158 6.15e-11 d.38.1.5 136319 3gekA 146 1.18e-10 1yocA 147 1.39e-10 d.38.1.5 123778 2prxA 160 2.50e-09 1ixlA 131 4.18e-09 d.38.1.5 90717 1sh8A 154 5.57e-09 d.38.1.5 105549 2eisA 133 1.42e-07 1t82A 155 5.20e-06 d.38.1.5 106639 3lwgA 145 5.79e-06 3lw3A 145 1.02e-05 2gvhA 288 1.64e-05 d.38.1.1,d.38.1.1 135776,135777 3lmbA 165 1.71e-05 1njkA 156 1.75e-05 d.38.1.1 85818 1yliA 153 1.97e-05 d.38.1.1 123651 1vpmA 169 2.18e-05 d.38.1.1 113967 2qq2A 193 2.92e-05 2q2bA 179 4.03e-05 1u1zA 168 4.06e-05 d.38.1.6 107602 3kuvA 139 5.42e-05 3bbjA 272 5.87e-05 2cwzA 141 7.13e-05 d.38.1.7 130961 3b7kA 333 8.64e-05 2cyeA 133 1.34e-04 d.38.1.1 131021 3k67A 159 1.95e-04 2b3nA 159 2.03e-04 d.38.1.4 127792 1s5uA 138 2.31e-04 d.38.1.1 98573 3bjkA 153 3.06e-04 3ir3A 148 7.66e-04 3ck1A 150 9.99e-04 2oiwA 136 1.02e-03 d.38.1.1 148794 1z54A 132 1.37e-03 d.38.1.1 124450 3cjyA 259 2.05e-03 3kg8A 308 2.77e-03 2fujA 137 3.28e-03 d.38.1.1 134175 2v1oA 151 3.91e-03 3hm0A 167 5.26e-03 2f41A 121 5.61e-03 d.38.1.5 132904 2gllA 171 8.41e-03 2gf6A 135 8.69e-03 d.38.1.1 135077 1c8uA 285 1.22e-02 1c8uA d.38.1.3,d.38.1.3 38547,38548 2oafA 151 1.46e-02 d.38.1.1 148695 1iq6A 134 3.92e-02 d.38.1.4 76755 2o5uA 148 4.03e-02 d.38.1.1 148616 2q78A 153 5.35e-02 d.38.1.7 150076 2av9A 147 5.97e-02 d.38.1.1 127365 2hx5A 152 8.95e-02 d.38.1.1 136837 3exzA 154 1.01e-01 2c2iA 151 1.14e-01 d.38.1.4 129670 1tbuA 118 1.30e-01 d.38.1.3 119223 2ownA 262 1.36e-01 d.38.1.8,d.38.1.8 149045,149046 2pzhA 135 1.37e-01 2hljA 157 3.81e-01 d.38.1.1 136570 1lo7A 141 4.80e-01 d.38.1.1 74144 1bvqA 141 7.02e-01 1bvqA d.38.1.1 38542 3bgaA 1010 8.14e-01 1z6bA 154 8.47e-01 d.38.1.6 124510 1f7tA 122 1.14e+00 1f7lA d.150.1.2 59667 1f7lA 121 1.15e+00 1f7lA d.150.1.2 59666 3khpA 311 1.18e+00 2egjA 128 1.40e+00 3esiA 129 1.77e+00 2aliA 158 2.22e+00 d.38.1.1 126976 2w3xA 147 2.72e+00 3e8vA 82 2.82e+00 1bhgA 613 3.20e+00 1bhgA b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 3hn3A 613 3.23e+00 1e0tA 470 3.39e+00 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2boyA 254 3.81e+00 3bnvA 152 3.93e+00 2ffsA 157 4.49e+00 d.129.3.7 133391 1sdjA 310 5.25e+00 d.21.1.2,d.21.1.2 98807,98808 2fs6A 137 5.48e+00 b.60.1.2 134005 1g0dA 695 6.21e+00 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 3hykA 122 7.58e+00 1qyaA 307 7.92e+00 d.21.1.2,d.21.1.2 104653,104654 1llnA 262 8.63e+00 d.165.1.1 84625 2fhxA 246 9.33e+00 2essA 248 9.49e+00 d.38.1.8,d.38.1.8 132346,132347 2g7bA 137 9.71e+00 3kg9A 296 1.10e+01 1t3tA 1303 1.15e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 2azqA 311 1.21e+01 1kt6A 183 1.39e+01 b.60.1.1 84466 1hbq 183 1.45e+01 1aqb 1aqb 183 1.53e+01 1aqb 3d0fA 106 1.73e+01 3klqA 141 1.92e+01 3cfxA 296 1.93e+01 1voqa 90 1.94e+01 1r4vA 171 1.95e+01 a.22.1.4 97049 2wg5A 109 1.95e+01 1fwkA 296 1.95e+01 1fwkA d.14.1.5,d.58.26.1 37576,39398 2qy9A 309 2.01e+01 a.24.13.1,c.37.1.10 151469,151470 2vqeK 129 2.03e+01 c.55.4.1 153435 1tmxA 293 2.08e+01 2nptA 106 2.18e+01 d.15.2.2 138448 2hzbA 333 2.20e+01 c.143.1.1 136911 1l4sA 112 2.25e+01 d.204.1.1 77693 3fxtA 113 2.25e+01 2ielA 138 2.26e+01 c.26.2.4 147649 2o2zA 323 2.57e+01 1wloA 136 2.63e+01 3gd7A 390 2.66e+01 2nujA 163 2.66e+01 d.38.1.1 138608 2nwaA 88 2.89e+01 b.122.1.13 148480 2f05A 105 2.94e+01 a.59.1.1 132651 1fjgK 129 2.95e+01 1fjfK c.55.4.1 33733 1dxrH 258 2.97e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 1r3eA 309 3.01e+01 b.122.1.1,d.265.1.2 96907,96908 1su8A 636 3.21e+01 e.26.1.2 98999 3bwlA 126 3.28e+01 1dmhA 311 3.35e+01 1dmhA b.3.6.1 22633 1o0wA 252 3.44e+01 a.149.1.1,d.50.1.1 80751,80752 2uubK 129 3.53e+01 c.55.4.1 139942 2xdhA 163 3.58e+01 2p26A 280 3.67e+01 1ht9A 76 3.68e+01 4icb a.39.1.1 61252 3k2kA 403 3.72e+01 2wg6A 109 3.89e+01 3ipfA 71 3.90e+01 3ip3A 337 3.93e+01 2ns9A 157 3.96e+01 d.129.3.10 148382 3a7rA 337 4.04e+01 1h72C 296 4.05e+01 d.14.1.5,d.58.26.1 60712,60713 3f8mA 248 4.06e+01 1te5A 257 4.08e+01 d.153.1.1 106795 3b49A 211 4.26e+01 3glaA 100 4.33e+01 1n3gA 113 4.36e+01 d.204.1.1 79962 1o9yA 84 4.39e+01 b.139.1.1 92692 2h3lA 103 4.40e+01 b.36.1.1 136046 1wi0A 113 4.44e+01 d.15.2.2 114657 1ej8A 140 4.46e+01 1qupA b.1.8.1 22300 1fo0B 112 4.48e+01 1kb5B b.1.1.1 20631 1std 172 4.54e+01 3stdA 1rh1A 511 4.64e+01 b.110.1.1,f.1.1.1 97462,97463 1namB 113 4.74e+01 b.1.1.1 85489 2conA 79 4.90e+01 g.41.15.1 130680 3hn9A 123 4.91e+01 2ausA 334 5.04e+01 2p6cA 137 5.10e+01 3jpwA 363 5.14e+01 2iiaA 131 5.15e+01 2e8iA 392 5.27e+01 2wp8B 246 5.31e+01 3mtxA 151 5.38e+01 1kb5A 115 5.47e+01 1tvdA b.1.1.1 20611 2w492 141 5.54e+01 1yjrA 75 5.58e+01 3stdA 165 5.66e+01 3stdA d.17.4.1 38073 1wybA 392 5.72e+01 e.3.1.1 145837 3demA 278 5.74e+01 1lw7A 365 5.74e+01 c.26.1.3,c.37.1.1 74295,74296 1zvnA 99 5.76e+01 2wd6A 349 5.89e+01 2reuA 258 5.91e+01 1ve3A 227 6.04e+01 c.66.1.43 120010 2a2fX 325 6.19e+01 1zo2A 129 6.28e+01 d.17.4.2 146021 2avdA 219 6.28e+01 c.66.1.1 127377 1tp6A 128 6.34e+01 d.17.4.12 107184 2w0pA 94 6.39e+01 b.1.18.10 153738 1whvA 100 6.39e+01 d.58.7.1 114652 2geyA 158 6.51e+01 d.17.4.9 147114 2il5A 171 6.59e+01 d.129.3.5 147723 2ga1A 106 6.73e+01 a.4.1.16 134850 2pi0A 116 6.77e+01 a.4.5.23 149489 2q03A 138 6.79e+01 b.159.2.1 149979 1pzsA 208 6.83e+01 b.1.8.1 104397 1ilyA 90 6.91e+01 c.55.4.1 71245 2yvyA 278 7.13e+01 1wk2A 121 7.20e+01 b.122.1.5 114720 2rk9A 145 7.22e+01 1d2fA 390 7.25e+01 1d2fA c.67.1.3 34411 2pbcA 102 7.26e+01 2d3jA 157 7.28e+01 2dp9A 124 7.28e+01 b.122.1.5 131609 2r7eA 742 7.33e+01 3guaA 217 7.38e+01 3goaA 387 7.42e+01 1xf1A 926 7.65e+01 1gnxA 479 7.66e+01 c.1.8.4 76241 3i5aA 334 7.66e+01 1n6zA 105 7.69e+01 d.263.1.1 85369 1l4iA 206 7.74e+01 b.1.11.1,b.7.2.1 73564,73565 1mkaA 171 7.81e+01 1mkaA d.38.1.2 38543 2ahoB 266 7.86e+01 a.60.14.1,b.40.4.5,d.58.51.1 126770,126771,126772 2q1fA 1022 7.98e+01