# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b6eA 146 8.37e-23 d.38.1.5 127986 1sc0A 138 8.62e-23 d.38.1.5 98796 1o0iA 138 9.41e-23 d.38.1.5 86532 1vh5A 148 2.64e-21 d.38.1.5 100642 1zkiA 133 6.40e-20 d.38.1.5 125199 3e1eA 141 3.45e-19 1psuA 140 3.74e-19 d.38.1.5 88285 2fs2A 151 4.10e-19 d.38.1.5 134003 2f0xA 148 1.02e-18 d.38.1.5 132673 3f5oA 148 1.15e-18 2h4uA 145 1.22e-18 d.38.1.5 136082 3dkzA 142 1.57e-18 3f1tA 148 2.49e-18 3e29A 144 1.31e-17 1j1yA 136 4.10e-17 d.38.1.5 90776 2pimA 141 4.20e-17 1wluA 136 4.39e-17 d.38.1.5 121015 3e8pA 164 5.18e-17 1q4uA 151 9.90e-17 d.38.1.5 95828 2ov9A 216 1.38e-16 d.38.1.5 149034 2cy9A 140 4.32e-16 d.38.1.5 131019 3hduA 157 4.69e-16 1yocA 147 1.71e-14 d.38.1.5 123778 2hboA 158 5.65e-14 d.38.1.5 136319 3gekA 146 1.92e-13 2prxA 160 2.63e-12 1sh8A 154 5.01e-12 d.38.1.5 105549 1ixlA 131 2.25e-11 d.38.1.5 90717 2eisA 133 4.74e-11 1yliA 153 4.84e-09 d.38.1.1 123651 2gvhA 288 9.14e-09 d.38.1.1,d.38.1.1 135776,135777 1t82A 155 1.13e-08 d.38.1.5 106639 3bjkA 153 1.56e-08 2qq2A 193 2.71e-08 2q2bA 179 4.09e-08 1vpmA 169 7.11e-08 d.38.1.1 113967 3lmbA 165 9.31e-08 3b7kA 333 1.58e-07 1njkA 156 1.90e-07 d.38.1.1 85818 1u1zA 168 3.26e-07 d.38.1.6 107602 2cyeA 133 5.17e-07 d.38.1.1 131021 3lwgA 145 5.19e-07 2cwzA 141 5.57e-07 d.38.1.7 130961 3lw3A 145 1.10e-06 3kuvA 139 1.57e-06 2gllA 171 6.30e-06 2v1oA 151 6.72e-06 1z54A 132 1.23e-05 d.38.1.1 124450 3k67A 159 1.42e-05 2b3nA 159 1.43e-05 d.38.1.4 127792 3kg8A 308 1.59e-05 2fujA 137 2.11e-05 d.38.1.1 134175 3ir3A 148 2.17e-05 2oiwA 136 3.07e-05 d.38.1.1 148794 3bbjA 272 3.11e-05 1s5uA 138 3.49e-05 d.38.1.1 98573 2o5uA 148 5.80e-05 d.38.1.1 148616 3ck1A 150 7.41e-05 2av9A 147 7.81e-05 d.38.1.1 127365 2oafA 151 4.72e-04 d.38.1.1 148695 3hm0A 167 5.02e-04 2f41A 121 6.54e-04 d.38.1.5 132904 2hljA 157 1.08e-03 d.38.1.1 136570 1iq6A 134 1.28e-03 d.38.1.4 76755 3cjyA 259 1.74e-03 1c8uA 285 1.75e-03 1c8uA d.38.1.3,d.38.1.3 38547,38548 3esiA 129 3.12e-03 1z6bA 154 4.72e-03 d.38.1.6 124510 2aliA 158 4.96e-03 d.38.1.1 126976 2gf6A 135 6.26e-03 d.38.1.1 135077 3bnvA 152 9.65e-03 3exzA 154 1.03e-02 2ownA 262 1.21e-02 d.38.1.8,d.38.1.8 149045,149046 2hx5A 152 1.26e-02 d.38.1.1 136837 3kg9A 296 2.15e-02 2nujA 163 2.20e-02 d.38.1.1 138608 2egjA 128 2.72e-02 2pzhA 135 2.98e-02 2essA 248 3.61e-02 d.38.1.8,d.38.1.8 132346,132347 1tbuA 118 4.68e-02 d.38.1.3 119223 2q78A 153 5.84e-02 d.38.1.7 150076 2c2iA 151 1.78e-01 d.38.1.4 129670 1mkaA 171 2.14e-01 1mkaA d.38.1.2 38543 1yycA 174 2.14e-01 3khpA 311 2.58e-01 3el6A 313 2.81e-01 2w3xA 147 2.89e-01 1lo7A 141 3.39e-01 d.38.1.1 74144 1bvqA 141 3.74e-01 1bvqA d.38.1.1 38542 3fldA 153 5.94e-01 2bi0A 337 7.82e-01 d.38.1.4,d.38.1.4 128565,128566 3hvnA 508 1.20e+00 1g0dA 695 1.69e+00 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 3lpmA 259 2.01e+00 3b49A 211 2.12e+00 1tjgH 237 3.26e+00 b.1.1.1,b.1.1.2 112446,112447 1q52A 314 3.33e+00 c.14.1.3 95846 3bgaA 1010 4.07e+00 3dkcA 317 4.07e+00 3hn3A 613 5.14e+00 2f5bH 235 5.57e+00 b.1.1.1,b.1.1.2 88506,88507 2fs6A 137 6.56e+00 b.60.1.2 134005 2a15A 139 7.01e+00 d.17.4.3 125973 2g7bA 137 7.24e+00 2w0mA 235 8.40e+00 3ey8A 133 9.42e+00 1bhgA 613 9.96e+00 1bhgA b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1zo2A 129 1.05e+01 d.17.4.2 146021 3lk41 286 1.07e+01 2dj5A 133 1.09e+01 c.92.1.3 131536 2r2cA 183 1.11e+01 2fhfA 1083 1.14e+01 b.1.18.2,b.1.18.2,b.3.1.3,b.71.1.1,c.1.8.1 147035,147036,147037,147038,147039 2fhxA 246 1.21e+01 1q7lA 198 1.23e+01 c.56.5.4 96044 1gmiA 136 1.28e+01 b.7.1.1 65309 3huhA 152 1.44e+01 2jkgA 179 1.44e+01 3g6xA 420 1.46e+01 3hnqA 144 1.51e+01 3mmhA 167 1.54e+01 1n3gA 113 1.54e+01 d.204.1.1 79962 1kjqA 391 1.60e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1ez1A 392 1.65e+01 1ez1A b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 1eyzA 392 1.65e+01 1ez1A b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 3idgB 237 1.75e+01 3lq8A 302 1.78e+01 2f57A 317 1.80e+01 3bwlA 126 1.86e+01 2jksA 315 1.95e+01 3cdzA 754 2.07e+01 1f3uA 118 2.09e+01 1f3uA b.65.1.1 27521 2p2sA 336 2.11e+01 3fxtA 113 2.14e+01 3f95A 193 2.16e+01 2w80C 253 2.22e+01 3mt0A 290 2.26e+01 2w01A 208 2.35e+01 1kt6A 183 2.36e+01 b.60.1.1 84466 3h4dA 390 2.36e+01 2pi0A 116 2.41e+01 a.4.5.23 149489 1x9nA 688 2.49e+01 a.235.1.1,b.40.4.6,d.142.2.1 115002,115003,115004 3dczA 207 2.57e+01 2owpA 129 2.74e+01 d.17.4.18 149049 2xe1A 354 2.75e+01 2vw9A 134 2.82e+01 3kl2A 226 2.86e+01 3ieyB 153 2.89e+01 1voqa 90 2.90e+01 3cox 507 2.95e+01 1b8sA 3coxA 507 2.95e+01 c.3.1.2,d.16.1.1 30332,37863 3jx8A 250 3.03e+01 1l4sA 112 3.05e+01 d.204.1.1 77693 2kdyA 261 3.20e+01 2dpiA 420 3.21e+01 d.240.1.1,e.8.1.7 131612,131613 2aqpA 164 3.24e+01 2gr8A 99 3.26e+01 d.24.1.4 135522 2yvyA 278 3.39e+01 3cbuA 214 3.49e+01 1jhdA 396 3.53e+01 b.122.1.3,c.26.1.5 66712,66713 3htyA 94 3.55e+01 2x4zA 296 3.56e+01 1aqb 183 3.62e+01 1aqb 1xrtA 467 3.73e+01 b.92.1.3,c.1.9.6 122258,122259 3bmzA 199 3.83e+01 2j0iA 303 3.88e+01 3gd7A 390 3.91e+01 2aqqA 164 3.95e+01 3kldA 384 3.98e+01 3dd6A 255 4.05e+01 1o9yA 84 4.06e+01 b.139.1.1 92692 3bghA 236 4.06e+01 3ijfX 133 4.08e+01 1vz6A 393 4.12e+01 d.154.1.2 108949 2f4lA 297 4.12e+01 b.23.3.1 132927 2anuA 255 4.15e+01 c.6.3.1 127058 2dznB 82 4.23e+01 1h2iA 209 4.28e+01 d.50.1.3 76550 1lfoA 127 4.30e+01 b.60.1.2 27223 1rmg 422 4.33e+01 1rmg 1rmgA 422 4.33e+01 b.80.1.3 28029 2boyA 254 4.36e+01 2v8qA 157 4.41e+01 d.129.6.2 152781 1wzaA 488 4.41e+01 b.71.1.1,c.1.8.1 121489,121490 3husC 311 4.52e+01 1iznA 286 4.56e+01 e.43.1.1 83847 1ej8A 140 4.58e+01 1qupA b.1.8.1 22300 3cebA 194 4.62e+01 1su8A 636 4.62e+01 e.26.1.2 98999 1o0wA 252 4.67e+01 a.149.1.1,d.50.1.1 80751,80752 3k6kA 322 4.68e+01 1te5A 257 4.70e+01 d.153.1.1 106795 1b8sA 504 4.81e+01 1b8sA c.3.1.2,d.16.1.1 30335,37866 1n4wA 504 4.83e+01 c.3.1.2,d.16.1.1 91676,91677 2b59A 187 4.85e+01 b.2.2.2 127879 3d6rA 158 4.88e+01 1b4vA 504 5.00e+01 1b8sA c.3.1.2,d.16.1.1 30334,37865 3dnmA 336 5.03e+01 3e9vA 120 5.07e+01 d.370.1.1 158072 3d6nA 422 5.16e+01 1v6tA 255 5.26e+01 c.6.2.5 113550 1q7fA 286 5.28e+01 b.68.9.1 96036 1xttA 216 5.30e+01 c.61.1.1 122300 2np9A 440 5.54e+01 2dcyA 185 5.56e+01 b.29.1.11 131388 2z79A 185 5.56e+01 1xnb 185 5.58e+01 1axkA 1hbq 183 5.64e+01 1aqb 2bm3A 166 5.70e+01 b.2.2.2 128762 1ijhA 504 5.75e+01 c.3.1.2,d.16.1.1 66161,66162 3gb2A 353 5.77e+01 2p4oA 306 5.78e+01 b.68.6.3 149216 1xi1A 575 5.79e+01 c.55.3.5,e.8.1.1 115309,115310 1ordA 730 5.82e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31274,34503,41124 2oklA 185 5.96e+01 3mbxH 230 5.96e+01 1gsoA 431 5.96e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1xeuA 263 5.97e+01 2py5A 575 5.98e+01 c.55.3.5,e.8.1.1 149928,149929 1n9pA 207 6.04e+01 b.1.18.16 80343 3g4pA 244 6.04e+01 1w6nA 134 6.12e+01 b.29.1.3 114275 3fv7A 244 6.13e+01 2alzA 390 6.15e+01 d.240.1.1,e.8.1.7 126994,126995 1kn0A 212 6.33e+01 d.50.1.3 77444 1pkp 150 6.34e+01 1pkp 3lfrA 136 6.36e+01 1jhjA 171 6.43e+01 b.18.1.9 66714 3ftqA 274 6.47e+01 1zkpA 268 6.50e+01 d.157.1.9 125205 2f4pA 147 6.56e+01 b.82.1.9 132933 2jc7A 244 6.60e+01 3a4pA 319 6.61e+01 2ganA 190 6.77e+01 d.108.1.1 134889 1ohpA 125 6.83e+01 d.17.4.3 118702 3k9dA 464 6.87e+01 1tp6A 128 6.97e+01 d.17.4.12 107184 2j5gA 263 7.01e+01 3cfxA 296 7.02e+01 1sltA 134 7.04e+01 1c1lA b.29.1.3 24186 3h0lA 478 7.07e+01 1w9hA 427 7.14e+01 c.55.3.10 120785 2azqA 311 7.15e+01 1iq0A 592 7.17e+01 a.27.1.1,c.26.1.1,d.67.2.1 66257,66258,66259 1meoA 209 7.22e+01 c.65.1.1 79035 3fbuA 168 7.23e+01 1j1bA 420 7.31e+01 d.144.1.7 90758 1vrmA 325 7.36e+01 d.96.2.1 120472 1r4vA 171 7.37e+01 a.22.1.4 97049 1b8aA 438 7.40e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 3h40A 389 7.41e+01 1ocvA 125 7.51e+01 d.17.4.3 86810 1h3nA 878 7.53e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 3holA 509 7.54e+01 1q41A 424 7.62e+01 d.144.1.7 95774 1r3eA 309 7.62e+01 b.122.1.1,d.265.1.2 96907,96908 1lshA 1056 7.69e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2fibA 269 7.71e+01 3fib d.171.1.1 42457 1vrbA 342 7.72e+01 b.82.2.11 120450 3if0X 153 7.74e+01 2conA 79 7.85e+01 g.41.15.1 130680 2fimA 276 7.89e+01 3lzfH 230 7.94e+01