# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sc0A 138 6.81e-22 d.38.1.5 98796 1o0iA 138 7.15e-22 d.38.1.5 86532 2b6eA 146 8.73e-22 d.38.1.5 127986 1vh5A 148 9.57e-21 d.38.1.5 100642 1zkiA 133 2.62e-19 d.38.1.5 125199 1psuA 140 8.78e-19 d.38.1.5 88285 2fs2A 151 9.23e-19 d.38.1.5 134003 3f5oA 148 1.97e-18 2f0xA 148 2.18e-18 d.38.1.5 132673 3e1eA 141 2.76e-18 2h4uA 145 3.01e-18 d.38.1.5 136082 3dkzA 142 3.85e-18 3e29A 144 2.22e-17 3f1tA 148 4.39e-17 2pimA 141 5.43e-17 1j1yA 136 8.74e-17 d.38.1.5 90776 1wluA 136 1.10e-16 d.38.1.5 121015 1q4uA 151 1.19e-16 d.38.1.5 95828 2ov9A 216 1.56e-16 d.38.1.5 149034 3e8pA 164 8.40e-16 3hduA 157 1.03e-15 1yocA 147 1.26e-14 d.38.1.5 123778 2cy9A 140 1.39e-14 d.38.1.5 131019 3gekA 146 2.03e-13 2hboA 158 5.49e-13 d.38.1.5 136319 2prxA 160 3.05e-12 1sh8A 154 2.22e-11 d.38.1.5 105549 1ixlA 131 3.93e-11 d.38.1.5 90717 2eisA 133 5.91e-11 1yliA 153 1.79e-08 d.38.1.1 123651 1t82A 155 2.47e-08 d.38.1.5 106639 2qq2A 193 3.15e-08 3bjkA 153 4.51e-08 2gvhA 288 9.74e-08 d.38.1.1,d.38.1.1 135776,135777 2q2bA 179 1.34e-07 1vpmA 169 1.52e-07 d.38.1.1 113967 2cyeA 133 1.69e-07 d.38.1.1 131021 1njkA 156 2.38e-07 d.38.1.1 85818 1u1zA 168 2.50e-07 d.38.1.6 107602 2cwzA 141 3.97e-07 d.38.1.7 130961 3lmbA 165 4.16e-07 3b7kA 333 7.98e-07 3lwgA 145 1.25e-06 3lw3A 145 1.89e-06 3kuvA 139 2.24e-06 3bbjA 272 9.60e-06 1z54A 132 1.20e-05 d.38.1.1 124450 2gllA 171 1.31e-05 2fujA 137 1.35e-05 d.38.1.1 134175 3ck1A 150 1.51e-05 2v1oA 151 1.60e-05 2oiwA 136 2.12e-05 d.38.1.1 148794 3k67A 159 2.26e-05 1s5uA 138 2.27e-05 d.38.1.1 98573 2b3nA 159 2.28e-05 d.38.1.4 127792 3ir3A 148 2.72e-05 3kg8A 308 7.14e-05 2f41A 121 1.13e-04 d.38.1.5 132904 2o5uA 148 2.42e-04 d.38.1.1 148616 2oafA 151 3.72e-04 d.38.1.1 148695 2av9A 147 4.54e-04 d.38.1.1 127365 1iq6A 134 4.58e-04 d.38.1.4 76755 1c8uA 285 5.46e-04 1c8uA d.38.1.3,d.38.1.3 38547,38548 3exzA 154 6.29e-04 2hljA 157 6.75e-04 d.38.1.1 136570 3hm0A 167 6.79e-04 3esiA 129 1.83e-03 1z6bA 154 1.88e-03 d.38.1.6 124510 3cjyA 259 2.09e-03 2gf6A 135 2.86e-03 d.38.1.1 135077 3bnvA 152 2.94e-03 2aliA 158 5.38e-03 d.38.1.1 126976 2essA 248 5.76e-03 d.38.1.8,d.38.1.8 132346,132347 2ownA 262 8.95e-03 d.38.1.8,d.38.1.8 149045,149046 2egjA 128 1.19e-02 2hx5A 152 1.38e-02 d.38.1.1 136837 3kg9A 296 1.39e-02 1tbuA 118 1.41e-02 d.38.1.3 119223 2pzhA 135 1.98e-02 2q78A 153 3.17e-02 d.38.1.7 150076 2nujA 163 5.71e-02 d.38.1.1 138608 1lo7A 141 1.17e-01 d.38.1.1 74144 1bvqA 141 1.38e-01 1bvqA d.38.1.1 38542 1yycA 174 1.75e-01 3khpA 311 1.97e-01 2c2iA 151 2.60e-01 d.38.1.4 129670 1mkaA 171 3.67e-01 1mkaA d.38.1.2 38543 1q52A 314 4.04e-01 c.14.1.3 95846 2w3xA 147 4.24e-01 3el6A 313 6.06e-01 1g0dA 695 7.70e-01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2bi0A 337 9.56e-01 d.38.1.4,d.38.1.4 128565,128566 3bgaA 1010 1.20e+00 2jkgA 179 1.49e+00 1zo2A 129 1.72e+00 d.17.4.2 146021 3dkcA 317 1.88e+00 3b49A 211 2.12e+00 2vw9A 134 2.21e+00 2gr8A 99 2.28e+00 d.24.1.4 135522 3mmhA 167 2.44e+00 3hn3A 613 2.56e+00 3hvnA 508 3.66e+00 3fldA 153 3.72e+00 1q7lA 198 4.01e+00 c.56.5.4 96044 2w01A 208 4.21e+00 2g7bA 137 4.39e+00 2fs6A 137 4.69e+00 b.60.1.2 134005 3kldA 384 5.36e+00 2qq5A 260 5.61e+00 3cox 507 5.79e+00 1b8sA 3coxA 507 5.79e+00 c.3.1.2,d.16.1.1 30332,37863 3bwlA 126 5.83e+00 2fhxA 246 6.11e+00 2a15A 139 7.52e+00 d.17.4.3 125973 1kt6A 183 7.93e+00 b.60.1.1 84466 1o0wA 252 8.09e+00 a.149.1.1,d.50.1.1 80751,80752 2w80C 253 8.73e+00 1w9hA 427 8.75e+00 c.55.3.10 120785 2w0mA 235 8.86e+00 2np9A 440 9.16e+00 3lq8A 302 9.16e+00 2fhfA 1083 9.17e+00 b.1.18.2,b.1.18.2,b.3.1.3,b.71.1.1,c.1.8.1 147035,147036,147037,147038,147039 2oklA 185 9.78e+00 1sdjA 310 9.99e+00 d.21.1.2,d.21.1.2 98807,98808 2dj5A 133 1.00e+01 c.92.1.3 131536 2r78A 117 1.03e+01 3lk41 286 1.07e+01 1bhgA 613 1.09e+01 1bhgA b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1q7fA 286 1.09e+01 b.68.9.1 96036 1tp6A 128 1.11e+01 d.17.4.12 107184 1qyaA 307 1.12e+01 d.21.1.2,d.21.1.2 104653,104654 3htyA 94 1.15e+01 1n4wA 504 1.19e+01 c.3.1.2,d.16.1.1 91676,91677 3cdzA 754 1.21e+01 3lzfH 230 1.28e+01 3eerA 148 1.28e+01 1b4vA 504 1.30e+01 1b8sA c.3.1.2,d.16.1.1 30334,37865 1n3gA 113 1.30e+01 d.204.1.1 79962 1b8sA 504 1.31e+01 1b8sA c.3.1.2,d.16.1.1 30335,37866 3fbuA 168 1.45e+01 2rh7A 239 1.45e+01 d.22.1.1 152030 1hbq 183 1.45e+01 1aqb 1aqb 183 1.46e+01 1aqb 3mtxA 151 1.48e+01 3laoA 258 1.51e+01 2r2cA 183 1.51e+01 2w42A 427 1.67e+01 3hnqA 144 1.68e+01 1gmiA 136 1.69e+01 b.7.1.1 65309 3ijfX 133 1.77e+01 2ns9A 157 1.81e+01 d.129.3.10 148382 1ijhA 504 1.84e+01 c.3.1.2,d.16.1.1 66161,66162 1yjrA 75 1.85e+01 1n9pA 207 1.90e+01 b.1.18.16 80343 1ohpA 125 1.94e+01 d.17.4.3 118702 2hi2A 158 1.97e+01 3dg6A 367 2.04e+01 3huhA 152 2.09e+01 3brbA 313 2.13e+01 1xnb 185 2.15e+01 1axkA 2boyA 254 2.17e+01 2p19A 149 2.17e+01 d.190.1.2 149156 1dmhA 311 2.17e+01 1dmhA b.3.6.1 22633 2dcyA 185 2.24e+01 b.29.1.11 131388 2z79A 185 2.24e+01 3dhuA 449 2.25e+01 1voqa 90 2.26e+01 1vcaA 202 2.28e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1wz8A 264 2.29e+01 c.14.1.3 121483 3fxtA 113 2.29e+01 3f95A 193 2.33e+01 3husC 311 2.34e+01 1l4sA 112 2.35e+01 d.204.1.1 77693 2owpA 129 2.36e+01 d.17.4.18 149049 3dczA 207 2.40e+01 3dlrA 202 2.41e+01 1sq9A 397 2.41e+01 b.69.4.1 105889 2x0lA 734 2.46e+01 1su8A 636 2.47e+01 e.26.1.2 98999 1kn0A 212 2.50e+01 d.50.1.3 77444 1o9yA 84 2.53e+01 b.139.1.1 92692 1w6nA 134 2.66e+01 b.29.1.3 114275 3g4pA 244 2.75e+01 2jc7A 244 2.75e+01 2imhA 231 2.75e+01 d.153.1.7 147724 2i9wA 184 2.75e+01 d.17.4.30,g.74.1.1,g.74.1.1 147576,147577,147578 3l95B 227 2.76e+01 3fib 249 2.86e+01 3fib 3fibA 249 2.86e+01 d.171.1.1 42455 2kdyA 261 2.87e+01 2fibA 269 2.87e+01 3fib d.171.1.1 42457 3eypA 469 2.88e+01 1jhdA 396 2.92e+01 b.122.1.3,c.26.1.5 66712,66713 2polA 366 2.93e+01 2polA d.131.1.1,d.131.1.1,d.131.1.1 41356,41357,41358 1xvqA 175 2.94e+01 c.47.1.10 116094 1h2iA 209 2.94e+01 d.50.1.3 76550 3luqA 114 2.98e+01 2yxdA 183 3.00e+01 1tjgH 237 3.06e+01 b.1.1.1,b.1.1.2 112446,112447 3bmzA 199 3.13e+01 1vfrA 218 3.21e+01 1vfrA d.90.1.1 40247 1ok7A 366 3.22e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1u6mA 199 3.27e+01 d.108.1.1 113069 1f3uA 118 3.28e+01 1f3uA b.65.1.1 27521 3ey8A 133 3.31e+01 1nox 205 3.34e+01 1nox 1noxA 205 3.34e+01 d.90.1.1 40242 3d1gA 366 3.43e+01 d.131.1.1,d.131.1.1,d.131.1.1 157200,157201,157202 1sjyA 159 3.46e+01 d.113.1.1 98900 2k75A 106 3.53e+01 3g7sA 549 3.58e+01 3k9dA 464 3.59e+01 3kqfA 265 3.67e+01 1kzfA 230 3.71e+01 d.108.1.3 73354 1ocvA 125 3.71e+01 d.17.4.3 86810 1qwiA 143 3.72e+01 d.227.1.1 96474 2pil 159 3.75e+01 2pil 3dxoA 121 3.78e+01 d.17.4.19 157933 3brcA 156 3.79e+01 1wzaA 488 3.79e+01 b.71.1.1,c.1.8.1 121489,121490 2f57A 317 3.79e+01 3ihlA 282 3.81e+01 3hyqA 184 3.82e+01 2vg0A 227 3.82e+01 1rpyA 114 3.87e+01 d.93.1.1 97718 1tmxA 293 3.87e+01 2jksA 315 3.87e+01 3iavA 530 3.89e+01 1kwsA 261 3.89e+01 c.68.1.7 73083 3h9wA 115 3.90e+01 2fwvA 226 3.92e+01 2z3yA 662 3.95e+01 a.4.1.18,c.3.1.2,d.16.1.5 154024,154025,154026 1vrbA 342 4.19e+01 b.82.2.11 120450 2vgoA 284 4.20e+01 1kjqA 391 4.20e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1eyzA 392 4.20e+01 1ez1A b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1ez1A 392 4.20e+01 1ez1A b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 2iccA 119 4.22e+01 2p4oA 306 4.27e+01 b.68.6.3 149216 1xezA 721 4.30e+01 1ordA 730 4.30e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31274,34503,41124 1mtpA 323 4.32e+01 e.1.1.1 85107 1bywA 110 4.36e+01 1bywA d.110.3.6 40912 3fv7A 244 4.38e+01 1ry9A 145 4.44e+01 d.198.1.1 98094 3if5A 456 4.45e+01 2vgpA 284 4.45e+01 3mpzA 150 4.47e+01 1ad9B 219 4.48e+01 1gc1H b.1.1.1,b.1.1.2 20215,21227 1ju3A 583 4.48e+01 b.18.1.13,c.69.1.21 67300,67301 1xeuA 263 4.51e+01 1t4wA 196 4.52e+01 b.2.5.2 106427 2fm8A 135 4.52e+01 d.198.1.1 133767 3cfxA 296 4.55e+01 2dznB 82 4.55e+01 2anuA 255 4.59e+01 c.6.3.1 127058 2xahA 852 4.61e+01 2v17L 214 4.61e+01 1rmg 422 4.62e+01 1rmg 1rmgA 422 4.62e+01 b.80.1.3 28029 3i2kA 587 4.63e+01 3idaA 587 4.64e+01 1vz6A 393 4.68e+01 d.154.1.2 108949 1sltA 134 4.73e+01 1c1lA b.29.1.3 24186 3jx8A 250 4.75e+01 3f1vA 366 4.75e+01 2jmkA 111 4.81e+01 1j1bA 420 4.85e+01 d.144.1.7 90758 3hrqA 357 4.89e+01 2j5gA 263 4.90e+01 3ih8A 456 4.97e+01 1iznA 286 4.99e+01 e.43.1.1 83847 1ebbA 202 5.02e+01 c.60.1.1 64900 1v9yA 167 5.03e+01 d.110.3.2 108454 3dzvA 273 5.05e+01 2r6iA 284 5.12e+01 d.381.1.1 151612 3lpmA 259 5.21e+01 3bk5A 237 5.26e+01 3proC 166 5.27e+01 3proC d.52.1.1,d.52.1.1 38812,38813 2hzqA 174 5.36e+01 1v6iA 232 5.43e+01 b.29.1.1 100383 2icgA 160 5.43e+01 d.369.1.1 147601 2wafA 682 5.49e+01 2hayA 224 5.49e+01 2yvyA 278 5.50e+01 2wnwA 447 5.51e+01 3holA 509 5.57e+01 1mqkH 127 5.58e+01 b.1.1.1 85053 1f89A 291 5.59e+01 d.160.1.1 64988 2ffsA 157 5.61e+01 d.129.3.7 133391 3l22A 441 5.62e+01 2bfxA 284 5.67e+01 1i5pA 633 5.69e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 2pr5A 132 5.74e+01 3c96A 415 5.75e+01 c.3.1.2,d.16.1.2 156122,156123 1b5qA 472 5.75e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1h2eA 207 5.77e+01 c.60.1.1 70857 1meoA 209 5.78e+01 c.65.1.1 79035 2geeA 203 5.81e+01 1kxqE 120 5.82e+01 b.1.1.1 73171 1u5uA 374 5.86e+01 e.5.1.2 113052 2fimA 276 5.92e+01 1lqyA 184 5.93e+01 d.167.1.1 74212 3klqA 141 5.94e+01 3dnmA 336 5.95e+01 2pa8L 92 6.06e+01 1hz6A 72 6.07e+01 2ptl d.15.7.1 61429 1n4xH 120 6.09e+01 b.1.1.1 85324 1t3tA 1303 6.16e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 3hacA 728 6.17e+01 3kl2A 226 6.18e+01 3fveA 290 6.26e+01 1axkA 394 6.36e+01 1axkA b.29.1.2,b.29.1.11 24181,24315 3cebA 194 6.46e+01 2b59A 187 6.51e+01 b.2.2.2 127879 1xh9A 350 6.51e+01 3m7aA 140 6.61e+01 1gzwA 134 6.65e+01 b.29.1.3 90535 1r3eA 309 6.69e+01 b.122.1.1,d.265.1.2 96907,96908 2nr9A 196 6.71e+01 f.51.1.1 138519 3dkgA 317 6.72e+01 1k51A 72 6.73e+01 d.15.7.1 68147 1ihjA 98 6.80e+01 1pdr b.36.1.1 62382 1jhjA 171 6.87e+01 b.18.1.9 66714 1xttA 216 6.88e+01 c.61.1.1 122300 2ivwA 113 6.88e+01 3dy0A 336 6.89e+01 2wwkO 109 6.94e+01 2fsrA 195 6.95e+01 d.108.1.1 134036 3fivA 116 6.98e+01 1fmb b.50.1.1 26768 3dcdA 307 6.99e+01 1k52A 72 6.99e+01 d.15.7.1 68148 1u0qA 125 7.08e+01 1qg6A 261 7.12e+01 1eny c.2.1.2 29919 3i4zA 465 7.13e+01 1z45A 699 7.17e+01 b.30.5.4,c.2.1.2 124427,124428 2dj6A 115 7.17e+01 3hrxA 254 7.18e+01 2vg1A 228 7.21e+01 3d8pA 163 7.21e+01 1wtuA 99 7.26e+01 1huuA a.55.1.1 17904 1jssA 224 7.39e+01 d.129.3.2 71844 3pcgM 238 7.39e+01 3pchM b.3.6.1 22742 3ctrA 101 7.40e+01 3g6xA 420 7.41e+01 1gnxA 479 7.49e+01 c.1.8.4 76241 1pzsA 208 7.53e+01 b.1.8.1 104397 3ggnA 155 7.55e+01 1f2hA 169 7.60e+01 1f3vA d.58.22.1 59612 1r9cA 139 7.60e+01 d.32.1.2 97255 1ysqA 193 7.69e+01 3gfzA 413 7.71e+01 3l6iA 181 7.71e+01 1nkgA 508 7.74e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1f1sA 814 7.82e+01 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 2z8vA 335 7.83e+01 3e10A 168 7.84e+01 2k5wA 117 7.84e+01 b.40.13.1 148275