# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b6eA 146 3.48e-18 d.38.1.5 127986 1o0iA 138 3.96e-18 d.38.1.5 86532 1sc0A 138 4.11e-18 d.38.1.5 98796 1vh5A 148 5.21e-17 d.38.1.5 100642 1zkiA 133 1.60e-15 d.38.1.5 125199 3e1eA 141 2.96e-15 2fs2A 151 4.87e-15 d.38.1.5 134003 1psuA 140 6.11e-15 d.38.1.5 88285 3dkzA 142 6.90e-15 2f0xA 148 1.65e-14 d.38.1.5 132673 3f5oA 148 1.87e-14 3f1tA 148 2.34e-14 3e8pA 164 3.87e-14 3e29A 144 4.28e-14 2h4uA 145 6.58e-14 d.38.1.5 136082 1q4uA 151 7.92e-14 d.38.1.5 95828 2pimA 141 9.06e-14 2ov9A 216 6.39e-13 d.38.1.5 149034 1j1yA 136 8.30e-13 d.38.1.5 90776 1wluA 136 9.91e-13 d.38.1.5 121015 2cy9A 140 1.24e-12 d.38.1.5 131019 3hduA 157 4.59e-12 2hboA 158 6.95e-11 d.38.1.5 136319 1yocA 147 1.76e-10 d.38.1.5 123778 3gekA 146 9.03e-10 2prxA 160 9.27e-09 1sh8A 154 3.54e-08 d.38.1.5 105549 1ixlA 131 9.38e-08 d.38.1.5 90717 2eisA 133 9.07e-06 3lwgA 145 3.58e-05 1t82A 155 4.50e-05 d.38.1.5 106639 3bbjA 272 6.39e-05 1njkA 156 7.26e-05 d.38.1.1 85818 3lw3A 145 7.73e-05 3b7kA 333 1.04e-04 1u1zA 168 1.36e-04 d.38.1.6 107602 3kg8A 308 3.20e-04 3lmbA 165 4.95e-04 2gvhA 288 6.34e-04 d.38.1.1,d.38.1.1 135776,135777 1yliA 153 7.83e-04 d.38.1.1 123651 2cyeA 133 4.36e-03 d.38.1.1 131021 1s5uA 138 5.07e-03 d.38.1.1 98573 3k67A 159 9.74e-03 3bjkA 153 1.05e-02 2b3nA 159 1.19e-02 d.38.1.4 127792 1vpmA 169 1.20e-02 d.38.1.1 113967 2cwzA 141 1.44e-02 d.38.1.7 130961 2qq2A 193 1.80e-02 3cjyA 259 1.86e-02 2gllA 171 2.11e-02 2oiwA 136 2.27e-02 d.38.1.1 148794 2fujA 137 2.76e-02 d.38.1.1 134175 3kuvA 139 2.88e-02 2q2bA 179 7.45e-02 1c8uA 285 8.14e-02 1c8uA d.38.1.3,d.38.1.3 38547,38548 3ir3A 148 2.20e-01 1z54A 132 2.42e-01 d.38.1.1 124450 2oafA 151 2.78e-01 d.38.1.1 148695 3ck1A 150 3.08e-01 2f41A 121 4.64e-01 d.38.1.5 132904 3hm0A 167 4.88e-01 2o5uA 148 8.75e-01 d.38.1.1 148616 2w2dB 431 9.20e-01 2av9A 147 9.53e-01 d.38.1.1 127365 2ownA 262 1.08e+00 d.38.1.8,d.38.1.8 149045,149046 1f7tA 122 1.47e+00 1f7lA d.150.1.2 59667 1iq6A 134 1.50e+00 d.38.1.4 76755 1f7lA 121 1.54e+00 1f7lA d.150.1.2 59666 3khpA 311 1.57e+00 2q78A 153 1.92e+00 d.38.1.7 150076 1z6bA 154 2.09e+00 d.38.1.6 124510 2gf6A 135 2.59e+00 d.38.1.1 135077 2hx5A 152 2.77e+00 d.38.1.1 136837 2c2iA 151 3.28e+00 d.38.1.4 129670 2fs6A 137 3.73e+00 b.60.1.2 134005 3kg9A 296 4.13e+00 2g7bA 137 4.34e+00 2v1oA 151 4.65e+00 3exzA 154 4.66e+00 2dd7A 216 5.32e+00 3hykA 122 5.77e+00 2hljA 157 5.82e+00 d.38.1.1 136570 3c8wA 255 6.92e+00 d.347.1.1 156053 2aliA 158 9.03e+00 d.38.1.1 126976 1t3tA 1303 9.16e+00 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 2hdwA 367 1.03e+01 1tbuA 118 1.07e+01 d.38.1.3 119223 3goaA 387 1.28e+01 1e0tA 470 1.40e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1wloA 136 1.45e+01 2ffsA 157 1.46e+01 d.129.3.7 133391 3h3zA 235 1.51e+01 1ve3A 227 1.64e+01 c.66.1.43 120010 1lo7A 141 1.66e+01 d.38.1.1 74144 3bgaA 1010 1.84e+01 2o23A 265 2.13e+01 c.2.1.2 138884 2ahoB 266 2.15e+01 a.60.14.1,b.40.4.5,d.58.51.1 126770,126771,126772 2f05A 105 2.18e+01 a.59.1.1 132651 2po1B 277 2.22e+01 2wirA 313 2.27e+01 3el6A 313 2.28e+01 2pzhA 135 2.34e+01 2wp8B 246 2.43e+01 3edmA 259 2.49e+01 1bvqA 141 2.57e+01 1bvqA d.38.1.1 38542 1b0zA 445 2.61e+01 2pgi c.80.1.2 35309 2pgi 445 2.61e+01 2pgi 3gd7A 390 2.61e+01 1uedA 406 2.67e+01 a.104.1.1 99256 2f57A 317 2.71e+01 3b49A 211 3.18e+01 2i4lA 458 3.22e+01 3lfrA 136 3.29e+01 1wdkC 390 3.31e+01 c.95.1.1,c.95.1.1 109258,109259 1c7qA 445 3.32e+01 2pgi c.80.1.2 35307 2j3hA 345 3.33e+01 3cfxA 296 3.51e+01 2avdA 219 3.70e+01 c.66.1.1 127377 1hbq 183 3.76e+01 1aqb 3g1jA 93 3.83e+01 3bc9A 599 3.87e+01 3k2kA 403 3.91e+01 1kt6A 183 3.97e+01 b.60.1.1 84466 2a2fX 325 4.00e+01 3a7rA 337 4.06e+01 1lzlA 323 4.09e+01 c.69.1.2 78306 1jdqA 98 4.14e+01 d.68.3.3 66559 3ctrA 101 4.21e+01 1ezm 301 4.30e+01 1hyt 1aqb 183 4.38e+01 1aqb 3iukA 562 4.47e+01 3m6wA 464 4.59e+01 3f02A 359 4.60e+01 3fvdA 378 4.66e+01 1iuaA 83 4.71e+01 g.35.1.1 71438 3a38A 83 4.77e+01 1dciA 275 4.99e+01 1dciA c.14.1.3 30918 3g3kA 259 5.00e+01 1pvgA 418 5.02e+01 d.14.1.3,d.122.1.2 95161,95162 2c30A 321 5.08e+01 1q5dA 419 5.25e+01 a.104.1.1 95891 2qddA 378 5.29e+01 2ijzA 428 5.35e+01 3stdA 165 5.53e+01 3stdA d.17.4.1 38073 3g3hA 261 5.53e+01 1sjdA 368 5.62e+01 c.1.11.2,d.54.1.1 105632,105633 1qm9A 198 5.64e+01 1qm9A d.58.7.1,d.58.7.1 39207,39208 3a39A 83 5.68e+01 2awkA 228 5.76e+01 3e8vA 82 5.81e+01 3g3jA 259 5.86e+01 3lg6A 235 5.92e+01 3mgxA 415 5.99e+01 1u4gA 301 6.05e+01 d.92.1.2 107670 3c5vA 316 6.10e+01 3d2lA 243 6.46e+01 3d7rA 326 6.48e+01 3g3iA 259 6.59e+01 2wg5A 109 6.61e+01 2fhxA 246 6.66e+01 1qzrA 418 6.73e+01 d.14.1.3,d.122.1.2 96659,96660 1u5uA 374 6.84e+01 e.5.1.2 113052 1bhdA 118 6.86e+01 1bkrA a.40.1.1 17398 2wg6A 109 6.89e+01 1su8A 636 6.94e+01 e.26.1.2 98999 3guaA 217 7.08e+01 3h4zA 568 7.14e+01 3f8kA 160 7.18e+01 3k2iA 422 7.40e+01 3l22A 441 7.44e+01 1kpgA 287 7.71e+01 c.66.1.18 68735 1t90A 486 7.78e+01 1u4nA 310 7.82e+01 c.69.1.2 113021 1idpA 172 7.87e+01 d.17.4.1 83685 1g8lA 411 7.89e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367