# List of top-scoring protein chains for T0632.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b6eA 146 5.69e-20 d.38.1.5 127986 1sc0A 138 6.28e-20 d.38.1.5 98796 1vh5A 148 9.93e-19 d.38.1.5 100642 1sbkA 144 1.70e-18 d.38.1.5 98791 1vh9A 149 9.18e-18 d.38.1.5 100653 3f5oA 148 1.38e-17 1zkiA 133 1.69e-17 d.38.1.5 125199 1psuA 140 2.21e-17 d.38.1.5 88285 2fs2A 151 2.24e-17 d.38.1.5 134003 2h4uA 145 4.41e-17 d.38.1.5 136082 2cy9A 140 5.14e-17 d.38.1.5 131019 3e1eA 141 3.76e-16 1wluA 136 5.46e-16 d.38.1.5 121015 3dkzA 142 1.18e-15 2dslA 136 1.31e-15 3f1tA 148 1.78e-15 3e29A 144 2.03e-15 1q4uA 151 1.08e-14 d.38.1.5 95828 3e8pA 164 1.61e-14 2qwzA 159 2.53e-14 2pimA 141 1.56e-13 2hboA 158 2.29e-12 d.38.1.5 136319 3hduA 157 3.71e-12 3gekA 146 6.02e-12 2ov9A 216 9.26e-10 d.38.1.5 149034 2prxA 160 1.75e-07 1ixlA 131 1.82e-07 d.38.1.5 90717 2gvhA 288 1.48e-06 d.38.1.1,d.38.1.1 135776,135777 2eisA 133 1.93e-06 1sh8A 154 2.40e-06 d.38.1.5 105549 3d6lA 137 5.90e-06 1yliA 153 6.02e-06 d.38.1.1 123651 1yocA 147 7.62e-06 d.38.1.5 123778 2qq2A 193 1.23e-05 2q2bA 179 1.37e-05 3bjkA 153 7.16e-05 1vpmA 169 7.39e-05 d.38.1.1 113967 3lwgA 145 1.48e-04 3lw3A 145 2.21e-04 1y7uA 174 3.77e-04 d.38.1.1 122722 3kviA 139 4.55e-04 1njkA 156 7.14e-04 d.38.1.1 85818 3kuvA 139 7.64e-04 3lmbA 165 7.73e-04 3kv7A 139 1.50e-03 3bbjA 272 2.99e-03 2v1oA 151 4.00e-03 2cwzA 141 6.95e-03 d.38.1.7 130961 3k67A 159 8.32e-03 1t82A 155 1.26e-02 d.38.1.5 106639 2cyeA 133 1.52e-02 d.38.1.1 131021 2f3xA 157 1.75e-02 d.38.1.5 132901 3b7kA 333 3.00e-02 3ck1A 150 5.06e-02 3ir3A 148 5.31e-02 2f41A 121 8.71e-02 d.38.1.5 132904 1u1zA 168 1.01e-01 d.38.1.6 107602 1q6wA 161 1.70e-01 d.38.1.4 96000 3kg8A 308 1.76e-01 1c8uA 285 2.81e-01 1c8uA d.38.1.3,d.38.1.3 38547,38548 2fujA 137 7.96e-01 d.38.1.1 134175 1qwgA 251 8.24e-01 c.1.27.1 96473 3hm0A 167 1.81e+00 1s5uA 138 2.45e+00 d.38.1.1 98573 3cjyA 259 2.80e+00 2oiwA 136 2.92e+00 d.38.1.1 148794 2qorA 204 2.94e+00 1oypA 245 3.36e+00 d.14.1.4,d.101.1.1 93734,93735 1oysA 245 4.52e+00 d.14.1.4,d.101.1.1 93758,93759 2av9A 147 5.53e+00 d.38.1.1 127365 2o5uA 148 5.56e+00 d.38.1.1 148616 3bnvA 152 5.61e+00 2o6tA 149 5.86e+00 d.38.1.1 148637 1z54A 132 6.37e+00 d.38.1.1 124450 2oafA 151 7.57e+00 d.38.1.1 148695 3hykA 122 7.89e+00 3idqA 369 1.19e+01 1f80A 120 1.46e+01 1f7lA d.150.1.2 59683 1v9jA 113 1.71e+01 d.52.6.1 100542 2yxlA 450 1.78e+01 2pifA 276 1.82e+01 d.382.1.1 149509 1g0hA 252 1.83e+01 1dk4A e.7.1.1 60171 2rhrA 277 1.87e+01 3csdA 281 1.89e+01 3m7nG 259 1.90e+01 2ra8A 362 1.94e+01 1f7lA 121 1.94e+01 1f7lA d.150.1.2 59666 2hljA 157 1.94e+01 d.38.1.1 136570 1iq6A 134 1.97e+01 d.38.1.4 76755 3fm3A 358 1.98e+01 3m85G 259 1.98e+01 1bykA 255 1.98e+01 1bykA c.93.1.1 35706 1f7tA 122 2.16e+01 1f7lA d.150.1.2 59667 2wjnH 258 2.17e+01 2conA 79 2.19e+01 g.41.15.1 130680 3g7fH 258 2.22e+01 2dp9A 124 2.48e+01 b.122.1.5 131609 2rauA 354 2.51e+01 1ve3A 227 2.54e+01 c.66.1.43 120010 3gqwA 576 2.56e+01 3i94A 248 2.59e+01 3d6xA 146 2.73e+01 3f0jA 248 2.77e+01 1ftsA 295 2.77e+01 a.24.13.1,c.37.1.10 16968,32279 3hrsA 214 2.81e+01 1wk2A 121 2.83e+01 b.122.1.5 114720 3f0lA 248 2.87e+01 2qy9A 309 3.23e+01 a.24.13.1,c.37.1.10 151469,151470 3dd6A 255 3.33e+01 2ffsA 157 3.61e+01 d.129.3.7 133391 2ijzA 428 3.74e+01 3i95A 248 3.90e+01 3a36A 362 4.06e+01 2ew0A 192 4.19e+01 d.310.1.1 132445 3e8vA 82 4.39e+01 2o0yA 260 4.52e+01 3hctA 118 4.77e+01 3d6nA 422 4.87e+01 3exzA 154 4.95e+01 2ielA 138 5.01e+01 c.26.2.4 147649 2w2dB 431 5.08e+01 2dm9A 198 5.19e+01 d.81.4.1 146544 3fldA 153 5.23e+01 3ey8A 133 5.30e+01 1xfrA 128 5.31e+01 2jxmB 249 5.37e+01 i.4.1.1 148236 3hbaA 334 5.38e+01 2p71A 132 5.43e+01 a.39.2.1 139516 1dqeA 137 5.58e+01 1dqeA a.39.2.1 17388 3hn3A 613 5.62e+01 2b44A 133 5.66e+01 2b0pA 134 5.68e+01 2fjyA 142 5.73e+01 a.39.2.1 133626 2ownA 262 6.00e+01 d.38.1.8,d.38.1.8 149045,149046 3l51A 161 6.05e+01 2wojA 354 6.37e+01 2pn5A 1325 6.43e+01 2hrkA 207 6.69e+01 2dloA 81 6.69e+01 g.39.1.3,g.39.1.3 131560,131561 2cofA 107 6.79e+01 b.55.1.1 130676 2fmlA 273 6.91e+01 a.4.5.68,d.113.1.6 133778,133779 2azoA 232 6.92e+01 1azo c.52.1.14 33330 2hraA 209 6.97e+01 1azoA 232 7.01e+01 c.52.1.14 33329 2j3hA 345 7.03e+01 1zxfA 155 7.20e+01 d.129.3.5 125771 1zlyA 203 7.24e+01 c.65.1.1 125271 1sy7A 715 7.31e+01 c.23.16.3 112161 1meoA 209 7.32e+01 c.65.1.1 79035 3esiA 129 7.55e+01 3bkxA 275 7.68e+01 1mejA 223 7.68e+01 c.65.1.1 79029 3edmA 259 7.90e+01