# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b6eA 146 6.63e-22 d.38.1.5 127986 1o0iA 138 8.69e-22 d.38.1.5 86532 1sc0A 138 1.07e-21 d.38.1.5 98796 1vh5A 148 5.41e-21 d.38.1.5 100642 2f0xA 148 2.52e-19 d.38.1.5 132673 3f5oA 148 2.68e-19 1psuA 140 5.68e-19 d.38.1.5 88285 2fs2A 151 5.94e-19 d.38.1.5 134003 2h4uA 145 9.12e-19 d.38.1.5 136082 1zkiA 133 9.42e-19 d.38.1.5 125199 3e1eA 141 7.87e-18 1j1yA 136 2.13e-17 d.38.1.5 90776 1wluA 136 2.28e-17 d.38.1.5 121015 2cy9A 140 6.25e-17 d.38.1.5 131019 3f1tA 148 6.68e-17 1q4uA 151 9.65e-17 d.38.1.5 95828 3e29A 144 1.15e-16 3dkzA 142 1.82e-16 3e8pA 164 3.50e-16 2pimA 141 3.61e-15 3hduA 157 3.76e-14 3gekA 146 1.22e-13 2hboA 158 1.48e-13 d.38.1.5 136319 2ov9A 216 2.38e-12 d.38.1.5 149034 1ixlA 131 1.91e-10 d.38.1.5 90717 1sh8A 154 6.07e-09 d.38.1.5 105549 2prxA 160 2.04e-08 2eisA 133 5.26e-08 1yocA 147 6.86e-08 d.38.1.5 123778 3lwgA 145 9.03e-07 3bbjA 272 2.08e-06 3lw3A 145 2.28e-06 1njkA 156 2.76e-06 d.38.1.1 85818 1yliA 153 4.42e-06 d.38.1.1 123651 2gvhA 288 5.49e-06 d.38.1.1,d.38.1.1 135776,135777 3lmbA 165 7.23e-06 2qq2A 193 8.08e-06 1t82A 155 1.09e-05 d.38.1.5 106639 2q2bA 179 1.42e-05 3b7kA 333 2.56e-05 3kuvA 139 2.87e-05 1vpmA 169 2.90e-05 d.38.1.1 113967 1u1zA 168 3.74e-05 d.38.1.6 107602 2cwzA 141 3.96e-05 d.38.1.7 130961 3bjkA 153 6.33e-05 3kg8A 308 1.83e-04 3k67A 159 3.05e-04 2b3nA 159 3.97e-04 d.38.1.4 127792 3ck1A 150 4.71e-04 2v1oA 151 9.98e-04 3ir3A 148 1.31e-03 1s5uA 138 1.32e-03 d.38.1.1 98573 3cjyA 259 1.43e-03 2cyeA 133 1.72e-03 d.38.1.1 131021 1c8uA 285 2.55e-03 1c8uA d.38.1.3,d.38.1.3 38547,38548 2f41A 121 3.06e-03 d.38.1.5 132904 2oiwA 136 4.76e-03 d.38.1.1 148794 2fujA 137 5.15e-03 d.38.1.1 134175 3hm0A 167 1.02e-02 1z54A 132 1.10e-02 d.38.1.1 124450 2gf6A 135 3.38e-02 d.38.1.1 135077 2oafA 151 4.77e-02 d.38.1.1 148695 2o5uA 148 4.95e-02 d.38.1.1 148616 2hx5A 152 5.11e-02 d.38.1.1 136837 2av9A 147 8.20e-02 d.38.1.1 127365 1tbuA 118 8.53e-02 d.38.1.3 119223 2ownA 262 1.15e-01 d.38.1.8,d.38.1.8 149045,149046 2ns9A 157 4.31e-01 d.129.3.10 148382 1iq6A 134 4.34e-01 d.38.1.4 76755 2hljA 157 5.13e-01 d.38.1.1 136570 3exzA 154 5.22e-01 3e8vA 82 5.68e-01 3bgaA 1010 5.99e-01 3hn3A 613 7.37e-01 2c2iA 151 7.44e-01 d.38.1.4 129670 2gllA 171 8.22e-01 1bhgA 613 9.89e-01 1bhgA b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 2pzhA 135 1.30e+00 2w3xA 147 1.33e+00 3hykA 122 1.55e+00 1f7lA 121 1.76e+00 1f7lA d.150.1.2 59666 1t3tA 1303 2.39e+00 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1r4vA 171 2.56e+00 a.22.1.4 97049 2ffsA 157 2.88e+00 d.129.3.7 133391 3d0fA 106 2.99e+00 1lo7A 141 3.10e+00 d.38.1.1 74144 1dxrH 258 3.16e+00 6prcH b.41.1.1,f.23.10.1 25456,43433 1e0tA 470 3.17e+00 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2qy9A 309 3.27e+00 a.24.13.1,c.37.1.10 151469,151470 2iiaA 131 3.39e+00 3bnvA 152 3.58e+00 2jmkA 111 3.75e+00 3cfxA 296 4.88e+00 2pifA 276 4.96e+00 d.382.1.1 149509 2vqeK 129 5.05e+00 c.55.4.1 153435 1yjrA 75 5.52e+00 1bvqA 141 5.71e+00 1bvqA d.38.1.1 38542 3esiA 129 6.02e+00 2wg5A 109 7.04e+00 2o2zA 323 7.27e+00 2hzbA 333 7.48e+00 c.143.1.1 136911 2q78A 153 8.29e+00 d.38.1.7 150076 1namB 113 8.40e+00 b.1.1.1 85489 3klqA 141 8.46e+00 1fjgK 129 8.53e+00 1fjfK c.55.4.1 33733 2boyA 254 8.87e+00 2fhxA 246 8.88e+00 1fo0B 112 8.89e+00 1kb5B b.1.1.1 20631 1ve3A 227 8.97e+00 c.66.1.43 120010 3hoaA 509 9.05e+00 2geyA 158 9.68e+00 d.17.4.9 147114 1o0wA 252 9.79e+00 a.149.1.1,d.50.1.1 80751,80752 2w0pA 94 1.01e+01 b.1.18.10 153738 2uubK 129 1.03e+01 c.55.4.1 139942 2wg6A 109 1.04e+01 2jr7A 89 1.09e+01 2conA 79 1.18e+01 g.41.15.1 130680 2p26A 280 1.22e+01 1wgzA 510 1.23e+01 3k7cA 114 1.28e+01 1z6bA 154 1.34e+01 d.38.1.6 124510 1d2fA 390 1.45e+01 1d2fA c.67.1.3 34411 1su8A 636 1.54e+01 e.26.1.2 98999 2pi0A 116 1.59e+01 a.4.5.23 149489 3h3zA 235 1.66e+01 3iswA 99 1.67e+01 2aliA 158 1.67e+01 d.38.1.1 126976 2hdwA 367 1.76e+01 2f05A 105 1.80e+01 a.59.1.1 132651 3khpA 311 1.80e+01 3ipfA 71 1.80e+01 2azqA 311 1.84e+01 2vvmA 495 1.85e+01 2essA 248 1.95e+01 d.38.1.8,d.38.1.8 132346,132347 2fyxA 143 2.02e+01 d.58.57.1 134411 3h0gE 210 2.02e+01 3f8mA 248 2.04e+01 2bypA 214 2.10e+01 2f1wA 158 2.11e+01 1tqgA 105 2.13e+01 a.24.10.3 107224 2bynA 227 2.14e+01 2brqA 97 2.14e+01 b.1.18.10 129008 3jpwA 363 2.15e+01 3guaA 217 2.18e+01 2ew0A 192 2.21e+01 d.310.1.1 132445 3c5vA 316 2.23e+01 1n6zA 105 2.28e+01 d.263.1.1 85369 2nvnA 122 2.28e+01 d.18.1.3 138633 3kg9A 296 2.30e+01 2f86B 143 2.32e+01 d.17.4.7 146998 2egjA 128 2.34e+01 2ausA 334 2.40e+01 1gnxA 479 2.42e+01 c.1.8.4 76241 1r3eA 309 2.45e+01 b.122.1.1,d.265.1.2 96907,96908 3fcdA 134 2.46e+01 2exnA 136 2.47e+01 b.165.1.1 132562 3a7rA 337 2.52e+01 2bw2A 140 2.53e+01 1wgeA 83 2.53e+01 g.41.17.1 120972 2h1eA 177 2.60e+01 2bolA 314 2.76e+01 2j3hA 345 2.79e+01 3lywA 90 2.82e+01 2qorA 204 2.82e+01 3dmqA 968 2.94e+01 3hn9A 123 3.01e+01 1s7oA 113 3.02e+01 a.4.13.3 105354 2f5gA 133 3.04e+01 d.58.57.1 132991 2buwB 241 3.07e+01 b.3.6.1 145016 1xf1A 926 3.10e+01 3f3qA 109 3.21e+01 2e8iA 392 3.26e+01 1dmhA 311 3.30e+01 1dmhA b.3.6.1 22633 2kpuA 96 3.37e+01 2i5nH 258 3.62e+01 b.41.1.1,f.23.10.1 137064,137065 1nnxA 109 3.63e+01 b.40.10.1 92013 2avdA 219 3.63e+01 c.66.1.1 127377 2pk8A 103 3.67e+01 d.274.1.1 139707 3d7lA 202 3.73e+01 1p9eA 331 3.74e+01 d.157.1.5 104088 1llnA 262 3.75e+01 d.165.1.1 84625 1yz1A 174 3.80e+01 b.88.1.2 124264 2rk9A 145 3.82e+01 1wybA 392 3.84e+01 e.3.1.1 145837 2d4yA 463 3.84e+01 2reuA 258 3.99e+01 2gpyA 233 4.01e+01 3fyfA 176 4.08e+01 3h43A 85 4.19e+01 2wd6A 349 4.25e+01 1ezm 301 4.32e+01 1hyt 1yy6A 155 4.33e+01 2okxA 956 4.33e+01 3edmA 259 4.37e+01 2burB 241 4.41e+01 b.3.6.1 129228 3ip3A 337 4.42e+01 2ashA 381 4.42e+01 1voqa 90 4.46e+01 2jksA 315 4.56e+01 2p3hA 101 4.57e+01 d.145.1.4 149177 3idqA 369 4.62e+01 3gy9A 150 4.70e+01 1k4nA 192 4.85e+01 d.32.1.5 72059 3goaA 387 5.01e+01 1g0dA 695 5.17e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 1t5eA 360 5.22e+01 f.46.1.1 106436 3fxtA 113 5.30e+01 1lw7A 365 5.37e+01 c.26.1.3,c.37.1.1 74295,74296 2hraA 209 5.41e+01 1z6gA 218 5.42e+01 1lzlA 323 5.48e+01 c.69.1.2 78306 3dkcA 317 5.49e+01 2dp9A 124 5.54e+01 b.122.1.5 131609 2diuA 96 5.55e+01 3bkxA 275 5.59e+01 2pgzA 230 5.66e+01 3eo8A 219 5.83e+01 2v17L 214 5.84e+01 3fx7A 94 5.85e+01 2je8A 848 5.95e+01 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 1l4sA 112 5.98e+01 d.204.1.1 77693 3ey8A 133 5.98e+01 1mkaA 171 6.08e+01 1mkaA d.38.1.2 38543 2q03A 138 6.09e+01 b.159.2.1 149979 3mqtA 394 6.12e+01 1fnyA 237 6.16e+01 1led b.29.1.1 59920 2dd7A 216 6.17e+01 3eggC 170 6.17e+01 1i84S 1184 6.21e+01 1lvk i.15.1.1 61940 1wk2A 121 6.29e+01 b.122.1.5 114720 3mtxA 151 6.33e+01 2d81A 318 6.33e+01 c.69.1.37 146471 2zvyA 183 6.35e+01 2zsiA 351 6.35e+01 2fojA 155 6.56e+01 3gi7A 122 6.58e+01 1ikpA 613 6.59e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1ej8A 140 6.61e+01 1qupA b.1.8.1 22300 2grrA 161 6.62e+01 3khnA 174 6.68e+01 1lddA 74 6.69e+01 a.4.5.34 73841 2ahoB 266 6.72e+01 a.60.14.1,b.40.4.5,d.58.51.1 126770,126771,126772 2dbhA 102 6.74e+01 3ftqA 274 6.75e+01 1pg6A 243 6.77e+01 b.82.5.2 94673 1rlkA 117 6.80e+01 c.131.1.1 97651 2vr4A 846 6.85e+01 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153495,153496,153497,153498,153499 1f2tB 148 6.85e+01 1f2tB 3k2kA 403 6.85e+01 3ex4A 260 6.92e+01 3pcgM 238 6.96e+01 3pchM b.3.6.1 22742 2vjxA 846 6.97e+01 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153203,153204,153205,153206,153207 3i5gC 159 6.97e+01 2o36A 674 7.06e+01 2qn6B 93 7.08e+01 d.58.51.1 150914 2rauA 354 7.12e+01 3ku3B 174 7.23e+01 2wp8B 246 7.24e+01 1h1oA 183 7.25e+01 a.3.1.4,a.3.1.4 83454,83455 2nz8B 313 7.29e+01 a.87.1.1,b.55.1.1 138838,138839 1v6iA 232 7.31e+01 b.29.1.1 100383 3f3xA 144 7.32e+01 2q5wD 77 7.35e+01 3hbaA 334 7.36e+01 3htyA 94 7.37e+01 2gujA 155 7.43e+01 b.106.1.3 147180 1kt6A 183 7.47e+01 b.60.1.1 84466 2bm8A 236 7.50e+01 c.66.1.50 128771 3ingA 325 7.53e+01 2ftxA 90 7.56e+01 d.300.1.1 134085 1y9wA 140 7.63e+01 d.108.1.1 122783 1hbq 183 7.66e+01 1aqb 1oapA 109 7.87e+01 d.79.7.1 92706 1s4bP 674 7.88e+01 d.92.1.5 105252 2jgyA 279 7.90e+01 2f57A 317 7.93e+01