# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b6eA 146 3.06e-24 d.38.1.5 127986 1sc0A 138 3.39e-24 d.38.1.5 98796 1o0iA 138 3.80e-24 d.38.1.5 86532 1vh5A 148 1.56e-22 d.38.1.5 100642 2f0xA 148 9.83e-22 d.38.1.5 132673 3f5oA 148 1.48e-21 1psuA 140 3.36e-21 d.38.1.5 88285 2fs2A 151 3.59e-21 d.38.1.5 134003 2h4uA 145 6.43e-21 d.38.1.5 136082 1zkiA 133 1.60e-20 d.38.1.5 125199 3e1eA 141 8.06e-20 3f1tA 148 5.65e-19 3e29A 144 1.14e-18 1j1yA 136 1.21e-18 d.38.1.5 90776 1wluA 136 1.31e-18 d.38.1.5 121015 3dkzA 142 8.63e-18 1q4uA 151 8.68e-18 d.38.1.5 95828 2cy9A 140 1.35e-17 d.38.1.5 131019 3e8pA 164 2.94e-17 2pimA 141 4.11e-16 3hduA 157 7.28e-16 3gekA 146 3.76e-14 2hboA 158 4.55e-14 d.38.1.5 136319 2ov9A 216 4.21e-13 d.38.1.5 149034 1ixlA 131 3.50e-11 d.38.1.5 90717 1sh8A 154 6.53e-11 d.38.1.5 105549 2eisA 133 3.20e-10 1yocA 147 5.11e-10 d.38.1.5 123778 2prxA 160 1.22e-09 1yliA 153 2.80e-09 d.38.1.1 123651 3bjkA 153 1.21e-08 2gvhA 288 2.38e-08 d.38.1.1,d.38.1.1 135776,135777 2q2bA 179 7.29e-08 1t82A 155 7.54e-08 d.38.1.5 106639 2qq2A 193 7.89e-08 3lmbA 165 1.26e-07 1njkA 156 1.36e-07 d.38.1.1 85818 3b7kA 333 7.87e-07 3kuvA 139 1.11e-06 1vpmA 169 1.88e-06 d.38.1.1 113967 2v1oA 151 2.78e-06 3lwgA 145 2.95e-06 3lw3A 145 5.22e-06 2cwzA 141 5.34e-06 d.38.1.7 130961 3bbjA 272 9.78e-06 3kg8A 308 1.90e-05 2cyeA 133 2.12e-05 d.38.1.1 131021 1u1zA 168 5.15e-05 d.38.1.6 107602 3ck1A 150 5.45e-05 3ir3A 148 1.24e-04 2av9A 147 1.51e-04 d.38.1.1 127365 3k67A 159 1.53e-04 2b3nA 159 1.54e-04 d.38.1.4 127792 2o5uA 148 1.68e-04 d.38.1.1 148616 2f41A 121 2.54e-04 d.38.1.5 132904 2fujA 137 3.49e-04 d.38.1.1 134175 1z54A 132 4.28e-04 d.38.1.1 124450 2oiwA 136 5.67e-04 d.38.1.1 148794 1s5uA 138 8.23e-04 d.38.1.1 98573 2hljA 157 1.56e-03 d.38.1.1 136570 3esiA 129 1.80e-03 2gllA 171 5.12e-03 3hm0A 167 5.56e-03 1c8uA 285 5.60e-03 1c8uA d.38.1.3,d.38.1.3 38547,38548 3cjyA 259 6.46e-03 2hx5A 152 1.09e-02 d.38.1.1 136837 2oafA 151 1.10e-02 d.38.1.1 148695 2ownA 262 2.33e-02 d.38.1.8,d.38.1.8 149045,149046 1iq6A 134 2.81e-02 d.38.1.4 76755 1tbuA 118 4.32e-02 d.38.1.3 119223 3exzA 154 4.35e-02 2gf6A 135 4.60e-02 d.38.1.1 135077 3bnvA 152 5.21e-02 2w3xA 147 1.13e-01 2aliA 158 1.31e-01 d.38.1.1 126976 2pzhA 135 1.41e-01 1z6bA 154 1.44e-01 d.38.1.6 124510 3kg9A 296 2.00e-01 2nujA 163 3.37e-01 d.38.1.1 138608 2egjA 128 3.47e-01 3hvnA 508 4.77e-01 3fldA 153 7.38e-01 3lpmA 259 9.54e-01 2q78A 153 1.21e+00 d.38.1.7 150076 1bvqA 141 1.67e+00 1bvqA d.38.1.1 38542 1q7lA 198 1.70e+00 c.56.5.4 96044 3el6A 313 1.72e+00 2c2iA 151 1.73e+00 d.38.1.4 129670 1lo7A 141 1.88e+00 d.38.1.1 74144 3khpA 311 1.91e+00 3ey8A 133 2.13e+00 1mkaA 171 2.14e+00 1mkaA d.38.1.2 38543 2bi0A 337 2.44e+00 d.38.1.4,d.38.1.4 128565,128566 2essA 248 3.78e+00 d.38.1.8,d.38.1.8 132346,132347 2b59A 187 3.92e+00 b.2.2.2 127879 2ns9A 157 5.33e+00 d.129.3.10 148382 2bm3A 166 5.68e+00 b.2.2.2 128762 2zvyA 183 5.71e+00 3bgaA 1010 6.03e+00 1yycA 174 6.04e+00 1tjgH 237 6.58e+00 b.1.1.1,b.1.1.2 112446,112447 2pi0A 116 6.58e+00 a.4.5.23 149489 2jksA 315 7.28e+00 1zo2A 129 7.54e+00 d.17.4.2 146021 2zovA 210 7.98e+00 3hn3A 613 8.08e+00 3llsA 475 8.24e+00 2w38A 438 8.28e+00 2rjzA 147 9.04e+00 2z9eA 167 9.34e+00 1bhgA 613 9.34e+00 1bhgA b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 2hjeA 221 9.43e+00 d.110.6.3 147294 2a15A 139 9.52e+00 d.17.4.3 125973 1zhhB 242 9.53e+00 d.110.6.3 144740 1xi1A 575 1.03e+01 c.55.3.5,e.8.1.1 115309,115310 1o9yA 84 1.03e+01 b.139.1.1 92692 1g0dA 695 1.11e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2p2sA 336 1.19e+01 3dkcA 317 1.21e+01 2gr8A 99 1.29e+01 d.24.1.4 135522 3huhA 152 1.36e+01 2np9A 440 1.38e+01 1ohpA 125 1.41e+01 d.17.4.3 118702 2glfA 450 1.50e+01 1xrtA 467 1.54e+01 b.92.1.3,c.1.9.6 122258,122259 3l22A 441 1.61e+01 3hnqA 144 1.64e+01 2eknA 159 1.66e+01 1f2tB 148 1.67e+01 1f2tB 2kdyA 261 1.72e+01 1kjqA 391 1.74e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1eyzA 392 1.79e+01 1ez1A b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2e1hA 235 1.81e+01 3htyA 94 1.81e+01 2py5A 575 1.86e+01 c.55.3.5,e.8.1.1 149928,149929 3d6nA 422 1.92e+01 1xttA 216 1.93e+01 c.61.1.1 122300 2z2mC 125 2.12e+01 d.11.1.1,d.11.1.1 153944,153945 2r2cA 183 2.14e+01 1rf6A 427 2.15e+01 d.68.2.2 97366 3fxtA 113 2.17e+01 1ocvA 125 2.21e+01 d.17.4.3 86810 3gzrA 146 2.25e+01 2zc3C 125 2.35e+01 d.11.1.1,d.11.1.1 154325,154326 3mmhA 167 2.35e+01 3proC 166 2.43e+01 3proC d.52.1.1,d.52.1.1 38812,38813 3h12A 397 2.45e+01 3cfxA 296 2.58e+01 1nkgA 508 2.62e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 2wg6A 109 2.64e+01 2xe1A 354 2.67e+01 2w80C 253 2.68e+01 1zkpA 268 2.74e+01 d.157.1.9 125205 3kldA 384 2.76e+01 2wg5A 109 2.82e+01 3e8vA 82 2.88e+01 2owpA 129 2.89e+01 d.17.4.18 149049 2boyA 254 2.93e+01 3c8cA 240 2.96e+01 3kl2A 226 3.04e+01 2iiaA 131 3.04e+01 1v6iA 232 3.09e+01 b.29.1.1 100383 2bwqA 129 3.10e+01 b.7.1.2 129380 3dpcA 455 3.10e+01 1qtwA 285 3.11e+01 1qumA c.1.15.1 29392 2jigA 224 3.21e+01 3h6jA 438 3.25e+01 1xkrA 206 3.31e+01 d.252.1.1 115421 3g6xA 420 3.35e+01 3lwmA 540 3.43e+01 1ea5A 537 3.44e+01 2bce c.69.1.1 34592 1kyhA 276 3.63e+01 c.72.1.4 73222 3h55A 400 3.66e+01 1h1aA 191 3.70e+01 b.29.1.11 83450 1xnkA 196 3.78e+01 b.29.1.11 122195 1yjrA 75 3.86e+01 1qlmA 316 3.94e+01 1qlmA d.147.1.1 41765 2rfrA 155 3.95e+01 d.17.4.28 152000 1ysqA 193 4.11e+01 2p7jA 287 4.19e+01 d.110.6.2,d.110.6.2 149287,149288 3idgB 237 4.27e+01 1y6vA 449 4.36e+01 c.76.1.1 122674 2bngA 149 4.38e+01 d.17.4.8 146156 1lwjA 441 4.42e+01 b.71.1.1,c.1.8.1 74303,74304 1ed8A 449 4.43e+01 1b8jA c.76.1.1 34988 1txlA 215 4.59e+01 b.60.1.4 107429 3c8dA 403 4.63e+01 b.1.18.20,c.69.1.2 156025,156026 3h4dA 390 4.64e+01 1o5oA 221 4.67e+01 c.61.1.1 92509 1u6mA 199 4.67e+01 d.108.1.1 113069 2bd0A 244 4.69e+01 c.2.1.2 128321 2vjxA 846 4.74e+01 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153203,153204,153205,153206,153207 2ex2A 458 4.74e+01 e.3.1.3 132497 1f3uA 118 4.86e+01 1f3uA b.65.1.1 27521 1n4wA 504 4.91e+01 c.3.1.2,d.16.1.1 91676,91677 1gxuA 91 4.98e+01 d.58.10.1 76378 3kogA 256 5.00e+01 2dj5A 133 5.05e+01 c.92.1.3 131536 3lidA 295 5.05e+01 1rmg 422 5.10e+01 1rmg 1rmgA 422 5.10e+01 b.80.1.3 28029 1b4vA 504 5.16e+01 1b8sA c.3.1.2,d.16.1.1 30334,37865 2x4zA 296 5.28e+01 2ganA 190 5.44e+01 d.108.1.1 134889 1wqwA 235 5.46e+01 b.34.1.1,d.104.1.2 121179,121180 3iclA 171 5.52e+01 3lq8A 302 5.61e+01 3dczA 207 5.64e+01 2wy3B 158 5.66e+01 2nz8B 313 5.69e+01 a.87.1.1,b.55.1.1 138838,138839 3f95A 193 5.80e+01 2dpiA 420 5.85e+01 d.240.1.1,e.8.1.7 131612,131613 3b8jA 243 5.89e+01 1tiwA 602 5.96e+01 a.176.1.1,c.1.23.2 112430,112431 3fivA 116 6.03e+01 1fmb b.50.1.1 26768 3lm4A 339 6.12e+01 3mtxA 151 6.14e+01 2j0iA 303 6.16e+01 3e2qA 551 6.30e+01 1su8A 636 6.38e+01 e.26.1.2 98999 1j1bA 420 6.42e+01 d.144.1.7 90758 2eyqA 1151 6.46e+01 b.34.18.1,c.37.1.19,c.37.1.19,c.37.1.19,c.37.1.19,d.315.1.1 132590,132591,132592,132593,132594,132595 3kxwA 590 6.48e+01 2dznB 82 6.52e+01 1skoA 143 6.54e+01 d.110.7.1 105676 1tu1A 148 6.55e+01 d.107.1.3 107316 1yz1A 174 6.58e+01 b.88.1.2 124264 3hvwA 176 6.60e+01 3mgaA 407 6.69e+01 3cox 507 6.72e+01 1b8sA 3coxA 507 6.72e+01 c.3.1.2,d.16.1.1 30332,37863 2p3xA 339 6.73e+01 2yx0A 342 6.77e+01 3kmdA 200 6.78e+01 3e18A 359 6.91e+01 1k4nA 192 6.91e+01 d.32.1.5 72059 2qjjA 402 6.92e+01 2pt7A 330 6.94e+01 c.37.1.11 149834 3dlcA 219 7.05e+01 2w37A 359 7.08e+01 3lnnA 359 7.13e+01 2je8A 848 7.13e+01 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 1uu1A 335 7.16e+01 c.67.1.1 99993 2qgqA 304 7.19e+01 2wasA 122 7.20e+01 1g6oA 330 7.20e+01 1g6oA c.37.1.11 32430 2ac0A 200 7.27e+01 b.2.5.2 126539 2d4yA 463 7.27e+01 1k87A 669 7.33e+01 a.176.1.1,c.1.23.2 77286,77287 2vr4A 846 7.34e+01 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153495,153496,153497,153498,153499 2v17L 214 7.40e+01 2j21A 219 7.40e+01 3euhC 234 7.43e+01 1w5dA 462 7.46e+01 e.3.1.3 120642 1f5mA 180 7.50e+01 1f5mB d.110.2.1 40895 2f96A 224 7.51e+01 c.55.3.5 133153 1gsoA 431 7.52e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1te5A 257 7.53e+01 d.153.1.1 106795 2v8pA 271 7.58e+01 1xeuA 263 7.60e+01 2oqzA 223 7.60e+01 b.100.1.1 139255 1tupA 219 7.60e+01 1tupA b.2.5.2 22434 2bw2A 140 7.61e+01 1zs7A 190 7.63e+01 b.122.1.1,d.17.6.4 125593,125594 2cx1A 187 7.65e+01 b.122.1.1,d.17.6.4 130967,130968 2qecA 204 7.66e+01 3khnA 174 7.76e+01 1q52A 314 7.88e+01 c.14.1.3 95846 3gqhA 163 7.89e+01 1bt3A 345 7.95e+01 1bt3A a.86.1.2 18507 3dlaA 680 7.99e+01