# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sc0A 138 6.35e-24 d.38.1.5 98796 2b6eA 146 8.24e-24 d.38.1.5 127986 1o0iA 138 8.30e-24 d.38.1.5 86532 1vh5A 148 1.34e-22 d.38.1.5 100642 2f0xA 148 1.89e-21 d.38.1.5 132673 1psuA 140 1.96e-21 d.38.1.5 88285 2fs2A 151 2.06e-21 d.38.1.5 134003 3f5oA 148 2.42e-21 2h4uA 145 1.37e-20 d.38.1.5 136082 1zkiA 133 1.39e-20 d.38.1.5 125199 3e1eA 141 1.90e-19 1j1yA 136 7.24e-19 d.38.1.5 90776 3e29A 144 7.99e-19 1wluA 136 9.30e-19 d.38.1.5 121015 1q4uA 151 4.27e-18 d.38.1.5 95828 3f1tA 148 4.45e-18 3dkzA 142 5.85e-18 3e8pA 164 3.78e-17 2pimA 141 7.58e-17 2cy9A 140 3.51e-16 d.38.1.5 131019 3hduA 157 6.12e-15 3gekA 146 1.08e-14 2ov9A 216 7.48e-14 d.38.1.5 149034 2hboA 158 1.53e-13 d.38.1.5 136319 1ixlA 131 1.31e-11 d.38.1.5 90717 1sh8A 154 5.60e-11 d.38.1.5 105549 1yocA 147 8.96e-11 d.38.1.5 123778 2eisA 133 1.07e-10 2prxA 160 3.97e-10 1yliA 153 1.69e-09 d.38.1.1 123651 3bjkA 153 6.82e-09 1t82A 155 1.41e-08 d.38.1.5 106639 2qq2A 193 3.21e-08 1njkA 156 3.29e-08 d.38.1.1 85818 3lmbA 165 4.62e-08 2gvhA 288 6.53e-08 d.38.1.1,d.38.1.1 135776,135777 3b7kA 333 1.29e-07 2q2bA 179 1.98e-07 1vpmA 169 3.27e-07 d.38.1.1 113967 3kuvA 139 5.13e-07 2cwzA 141 9.36e-07 d.38.1.7 130961 3bbjA 272 1.07e-06 2v1oA 151 1.07e-06 2cyeA 133 1.17e-06 d.38.1.1 131021 3lwgA 145 1.40e-06 3lw3A 145 1.94e-06 3ck1A 150 2.88e-06 2f41A 121 1.64e-05 d.38.1.5 132904 3ir3A 148 2.79e-05 3kg8A 308 3.70e-05 2fujA 137 4.48e-05 d.38.1.1 134175 1z54A 132 4.49e-05 d.38.1.1 124450 1u1zA 168 7.25e-05 d.38.1.6 107602 3k67A 159 7.46e-05 2b3nA 159 7.65e-05 d.38.1.4 127792 2av9A 147 1.43e-04 d.38.1.1 127365 2o5uA 148 2.06e-04 d.38.1.1 148616 2oiwA 136 2.08e-04 d.38.1.1 148794 2hljA 157 2.38e-04 d.38.1.1 136570 1s5uA 138 3.35e-04 d.38.1.1 98573 3esiA 129 5.03e-04 1c8uA 285 7.12e-04 1c8uA d.38.1.3,d.38.1.3 38547,38548 3cjyA 259 9.94e-04 1iq6A 134 1.21e-03 d.38.1.4 76755 1tbuA 118 2.54e-03 d.38.1.3 119223 2oafA 151 3.01e-03 d.38.1.1 148695 3exzA 154 3.32e-03 3bnvA 152 7.24e-03 2gllA 171 7.33e-03 2gf6A 135 8.04e-03 d.38.1.1 135077 2hx5A 152 9.49e-03 d.38.1.1 136837 2ownA 262 1.08e-02 d.38.1.8,d.38.1.8 149045,149046 3hm0A 167 1.26e-02 2aliA 158 1.42e-02 d.38.1.1 126976 2egjA 128 2.45e-02 2essA 248 3.89e-02 d.38.1.8,d.38.1.8 132346,132347 1bvqA 141 5.44e-02 1bvqA d.38.1.1 38542 1lo7A 141 6.61e-02 d.38.1.1 74144 2w3xA 147 6.83e-02 2pzhA 135 7.59e-02 3kg9A 296 1.59e-01 2q78A 153 1.68e-01 d.38.1.7 150076 1z6bA 154 2.99e-01 d.38.1.6 124510 2nujA 163 3.20e-01 d.38.1.1 138608 1q7lA 198 4.61e-01 c.56.5.4 96044 1mkaA 171 4.78e-01 1mkaA d.38.1.2 38543 2c2iA 151 5.82e-01 d.38.1.4 129670 3khpA 311 8.55e-01 2bi0A 337 9.90e-01 d.38.1.4,d.38.1.4 128565,128566 3bgaA 1010 1.31e+00 2zvyA 183 1.47e+00 2ns9A 157 1.49e+00 d.129.3.10 148382 2gr8A 99 1.76e+00 d.24.1.4 135522 3hvnA 508 1.83e+00 3hn3A 613 2.02e+00 2zovA 210 2.65e+00 3cfxA 296 2.71e+00 1zo2A 129 2.83e+00 d.17.4.2 146021 2b59A 187 2.88e+00 b.2.2.2 127879 2hjeA 221 3.50e+00 d.110.6.3 147294 1g0dA 695 3.69e+00 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 3proC 166 4.19e+00 3proC d.52.1.1,d.52.1.1 38812,38813 1bhgA 613 4.40e+00 1bhgA b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 2a15A 139 4.58e+00 d.17.4.3 125973 2w38A 438 4.77e+00 2bm3A 166 5.20e+00 b.2.2.2 128762 2np9A 440 5.85e+00 1o9yA 84 5.94e+00 b.139.1.1 92692 1xttA 216 6.20e+00 c.61.1.1 122300 3h12A 397 6.37e+00 3fldA 153 6.47e+00 1zhhB 242 6.73e+00 d.110.6.3 144740 3kldA 384 6.81e+00 1kjqA 391 7.09e+00 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1eyzA 392 7.12e+00 1ez1A b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 3dkcA 317 7.19e+00 3l22A 441 7.61e+00 3euhC 234 8.21e+00 3etrB 305 8.22e+00 3htyA 94 8.42e+00 3cox 507 8.88e+00 1b8sA 3coxA 507 8.88e+00 c.3.1.2,d.16.1.1 30332,37863 3lpmA 259 9.01e+00 1v6iA 232 9.88e+00 b.29.1.1 100383 1yycA 174 1.03e+01 1ohpA 125 1.03e+01 d.17.4.3 118702 2z2mC 125 1.06e+01 d.11.1.1,d.11.1.1 153944,153945 1qlmA 316 1.08e+01 1qlmA d.147.1.1 41765 1fiqB 350 1.11e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 1v97A 1332 1.20e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1f2tB 148 1.22e+01 1f2tB 3huhA 152 1.24e+01 3lwmA 540 1.34e+01 1gxuA 91 1.35e+01 d.58.10.1 76378 2w80C 253 1.36e+01 2rh7A 239 1.39e+01 d.22.1.1 152030 3el6A 313 1.49e+01 2iiaA 131 1.52e+01 2qgqA 304 1.52e+01 3hnqA 144 1.52e+01 2kdyA 261 1.55e+01 1n4wA 504 1.58e+01 c.3.1.2,d.16.1.1 91676,91677 2onsA 314 1.63e+01 c.94.1.1 148914 3cijA 295 1.68e+01 1ea5A 537 1.75e+01 2bce c.69.1.1 34592 3e18A 359 1.83e+01 3fivA 116 1.84e+01 1fmb b.50.1.1 26768 1b4vA 504 1.86e+01 1b8sA c.3.1.2,d.16.1.1 30334,37865 3gzrA 146 1.86e+01 2pi0A 116 1.86e+01 a.4.5.23 149489 2jksA 315 1.87e+01 2owpA 129 1.88e+01 d.17.4.18 149049 3lq8A 302 1.89e+01 2bngA 149 1.90e+01 d.17.4.8 146156 3hvwA 176 1.93e+01 3mmhA 167 1.95e+01 3fxtA 113 1.95e+01 2e1hA 235 2.00e+01 2jigA 224 2.02e+01 2q0yA 153 2.04e+01 2h1eA 177 2.10e+01 3kmdA 200 2.11e+01 1ocvA 125 2.14e+01 d.17.4.3 86810 2zc3C 125 2.15e+01 d.11.1.1,d.11.1.1 154325,154326 3h6jA 438 2.20e+01 2eknA 159 2.20e+01 3iclA 171 2.25e+01 2oqzA 223 2.30e+01 b.100.1.1 139255 2wg5A 109 2.32e+01 2gqrA 237 2.34e+01 1ysqA 193 2.39e+01 3mtxA 151 2.40e+01 2qjjA 402 2.45e+01 2wg6A 109 2.47e+01 2vukA 219 2.48e+01 2w9iA 586 2.49e+01 3b8fA 142 2.50e+01 1uolA 219 2.57e+01 b.2.5.2 99695 2glfA 450 2.60e+01 2v8pA 271 2.65e+01 1w9hA 427 2.73e+01 c.55.3.10 120785 3klqA 141 2.74e+01 2vg0A 227 2.74e+01 1txlA 215 2.76e+01 b.60.1.4 107429 3llsA 475 2.79e+01 2nz8B 313 2.79e+01 a.87.1.1,b.55.1.1 138838,138839 2bwqA 129 2.81e+01 b.7.1.2 129380 2hahA 116 2.82e+01 2bw2A 140 2.83e+01 2ex2A 458 2.86e+01 e.3.1.3 132497 3b9jB 350 2.90e+01 d.87.2.1,d.145.1.3 155002,155003 1kt6A 183 2.94e+01 b.60.1.1 84466 3ey8A 133 2.95e+01 1xi1A 575 2.99e+01 c.55.3.5,e.8.1.1 115309,115310 1zxiC 288 3.03e+01 d.87.2.1,d.145.1.3 125776,125777 2rjzA 147 3.10e+01 1h1aA 191 3.10e+01 b.29.1.11 83450 3hn9A 123 3.12e+01 3brbA 313 3.13e+01 3eerA 148 3.14e+01 1nnxA 109 3.17e+01 b.40.10.1 92013 1hnf 182 3.27e+01 1qa9A 1hnfA 182 3.27e+01 b.1.1.1,b.1.1.3 19741,21680 1xeuA 263 3.27e+01 2anuA 255 3.28e+01 c.6.3.1 127058 1xnkA 196 3.31e+01 b.29.1.11 122195 3hyqA 184 3.38e+01 1kkhA 317 3.47e+01 d.14.1.5,d.58.26.3 72645,72646 2oklA 185 3.48e+01 3cptA 143 3.57e+01 d.110.7.1 156903 1xkrA 206 3.60e+01 d.252.1.1 115421 2iccA 119 3.60e+01 3gy1A 408 3.67e+01 3g4pA 244 3.70e+01 2jc7A 244 3.71e+01 2p3xA 339 3.71e+01 1skoA 143 3.75e+01 d.110.7.1 105676 2dznB 82 3.86e+01 2uubK 129 3.94e+01 c.55.4.1 139942 1kutA 230 3.97e+01 d.143.1.1 73017 2pcxA 220 3.98e+01 2r2cA 183 4.02e+01 2fg1A 158 4.03e+01 c.50.1.2 133400 2f96A 224 4.03e+01 c.55.3.5 133153 3fv7A 244 4.05e+01 1yz1A 174 4.06e+01 b.88.1.2 124264 3ga2A 246 4.07e+01 1o5oA 221 4.10e+01 c.61.1.1 92509 3laoA 258 4.15e+01 2ganA 190 4.17e+01 d.108.1.1 134889 2p2sA 336 4.17e+01 1qtwA 285 4.22e+01 1qumA c.1.15.1 29392 2jisA 515 4.23e+01 2j21A 219 4.30e+01 1meoA 209 4.30e+01 c.65.1.1 79035 4fiv 113 4.30e+01 1fmb 4fivA 113 4.30e+01 b.50.1.1 26762 3hrqA 357 4.32e+01 1winA 143 4.33e+01 d.43.2.1 114678 2bjqA 345 4.35e+01 b.169.1.1,b.169.1.1 128626,128627 2fyxA 143 4.39e+01 d.58.57.1 134411 3bjsA 428 4.44e+01 1zkpA 268 4.45e+01 d.157.1.9 125205 2vw9A 134 4.48e+01 2ac0A 200 4.48e+01 b.2.5.2 126539 3dg6A 367 4.48e+01 1lqyA 184 4.54e+01 d.167.1.1 74212 1zthA 258 4.57e+01 1rmg 422 4.60e+01 1rmg 1rmgA 422 4.60e+01 b.80.1.3 28029 2geyA 158 4.65e+01 d.17.4.9 147114 2py5A 575 4.68e+01 c.55.3.5,e.8.1.1 149928,149929 2wasA 122 4.75e+01 1u6mA 199 4.79e+01 d.108.1.1 113069 2w42A 427 4.85e+01 1oejA 193 4.86e+01 b.60.1.4 92798 3d06A 200 4.92e+01 1gc0A 398 4.94e+01 c.67.1.3 70168 3lm4A 339 4.99e+01 3c96A 415 5.00e+01 c.3.1.2,d.16.1.2 156122,156123 3mcrA 213 5.05e+01 2ejcA 280 5.11e+01 1eu1A 780 5.18e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1aqb 183 5.22e+01 1aqb 1ji0A 240 5.23e+01 c.37.1.12 71665 2ffsA 157 5.27e+01 d.129.3.7 133391 1j1bA 420 5.28e+01 d.144.1.7 90758 1yjrA 75 5.35e+01 2qq5A 260 5.36e+01 1iv3A 152 5.37e+01 d.79.5.1 76828 3b49A 211 5.40e+01 1q52A 314 5.45e+01 c.14.1.3 95846 3kxwA 590 5.50e+01 3e8vA 82 5.53e+01 1p0zA 131 5.59e+01 d.110.6.1 93882 2q35A 243 5.59e+01 2k5wA 117 5.80e+01 b.40.13.1 148275 2oz3A 404 5.82e+01 3lduA 385 5.95e+01 3i8bA 515 5.95e+01 3hz7A 87 5.95e+01 3dlcA 219 5.98e+01 3ip3A 337 6.00e+01 1yx1A 264 6.05e+01 c.1.15.7 124169 3k9dA 464 6.08e+01 2boyA 254 6.08e+01 3kogA 256 6.20e+01 3kl2A 226 6.29e+01 2wnwA 447 6.38e+01 3c3jA 384 6.41e+01 3k6kA 322 6.46e+01 1nslA 184 6.46e+01 d.108.1.1 86137 1tupA 219 6.53e+01 1tupA b.2.5.2 22434 3iavA 530 6.56e+01 2v1rA 80 6.59e+01 b.34.2.1 152411 1fjgK 129 6.61e+01 1fjfK c.55.4.1 33733 1tjgH 237 6.66e+01 b.1.1.1,b.1.1.2 112446,112447 3mjdA 232 6.68e+01 3iglA 200 6.70e+01 3ekgA 404 6.75e+01 2aqpA 164 6.78e+01 3h55A 400 6.78e+01 3l95B 227 6.79e+01 2aqqA 164 6.82e+01 1r2zA 274 6.87e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 3fib 249 6.88e+01 3fib 3fibA 249 6.88e+01 d.171.1.1 42455 1t11A 392 6.92e+01 a.223.1.1,d.241.2.1,d.26.1.1 106236,106237,106238 3dczA 207 6.93e+01 2v17L 214 6.99e+01 2fibA 269 7.01e+01 3fib d.171.1.1 42457 1l1zA 274 7.03e+01 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 3c8cA 240 7.06e+01 1g7sA 594 7.06e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1jilA 420 7.06e+01 c.26.1.1 66745 1l2tA 235 7.10e+01 c.37.1.12 73514 2bf6A 449 7.13e+01 1sltA 134 7.26e+01 1c1lA b.29.1.3 24186 1xynA 178 7.28e+01 b.29.1.11 24322 3f4sA 226 7.32e+01 2c92A 160 7.39e+01 2fl4A 149 7.42e+01 d.108.1.1 133706 3gpuA 256 7.43e+01 3pcgM 238 7.46e+01 3pchM b.3.6.1 22742 3dpcA 455 7.52e+01 1o6vA 466 7.59e+01 b.1.18.15,c.10.2.1 81099,81100 3gfzA 413 7.60e+01 3i0tA 179 7.66e+01 1h4pA 408 7.73e+01 c.1.8.3 90617 3f4tA 226 7.73e+01 1bt3A 345 7.73e+01 1bt3A a.86.1.2 18507 1pn2A 280 7.78e+01 d.38.1.4,d.38.1.4 94930,94931 3khnA 174 7.82e+01 2wwkO 109 7.82e+01 2qecA 204 7.85e+01 2ia1A 178 7.89e+01 d.359.1.1 147583 2hztA 107 7.90e+01 a.4.5.69 147462 2pc8A 400 7.94e+01 2bjbA 462 7.98e+01