# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b6eA 146 5.48e-22 d.38.1.5 127986 1o0iA 138 6.42e-22 d.38.1.5 86532 1sc0A 138 6.59e-22 d.38.1.5 98796 1vh5A 148 1.30e-20 d.38.1.5 100642 2f0xA 148 6.30e-19 d.38.1.5 132673 3f5oA 148 7.27e-19 2fs2A 151 2.36e-18 d.38.1.5 134003 1psuA 140 3.18e-18 d.38.1.5 88285 1zkiA 133 9.04e-18 d.38.1.5 125199 2h4uA 145 9.93e-18 d.38.1.5 136082 3e1eA 141 5.93e-17 1q4uA 151 9.54e-17 d.38.1.5 95828 3f1tA 148 1.72e-16 3dkzA 142 4.30e-16 3e29A 144 5.14e-16 2cy9A 140 5.96e-16 d.38.1.5 131019 1j1yA 136 7.56e-16 d.38.1.5 90776 1wluA 136 8.04e-16 d.38.1.5 121015 3e8pA 164 3.81e-15 2pimA 141 1.85e-14 2hboA 158 7.02e-13 d.38.1.5 136319 3hduA 157 8.38e-13 3gekA 146 1.43e-11 2ov9A 216 8.74e-11 d.38.1.5 149034 1ixlA 131 3.30e-08 d.38.1.5 90717 1sh8A 154 4.48e-07 d.38.1.5 105549 2prxA 160 2.30e-06 3bbjA 272 5.24e-06 1yocA 147 1.27e-05 d.38.1.5 123778 3kg8A 308 2.53e-05 3lwgA 145 3.92e-05 2eisA 133 5.04e-05 3b7kA 333 5.20e-05 3lw3A 145 1.06e-04 1njkA 156 1.83e-04 d.38.1.1 85818 1u1zA 168 3.96e-04 d.38.1.6 107602 1t82A 155 7.37e-04 d.38.1.5 106639 1yliA 153 8.02e-04 d.38.1.1 123651 3lmbA 165 1.12e-03 2gvhA 288 2.69e-03 d.38.1.1,d.38.1.1 135776,135777 1c8uA 285 2.82e-03 1c8uA d.38.1.3,d.38.1.3 38547,38548 3cjyA 259 3.07e-03 3bjkA 153 3.34e-03 3k67A 159 7.34e-03 2cwzA 141 8.96e-03 d.38.1.7 130961 2b3nA 159 9.49e-03 d.38.1.4 127792 2qq2A 193 1.24e-02 2q2bA 179 3.61e-02 1vpmA 169 5.16e-02 d.38.1.1 113967 3kuvA 139 5.84e-02 2cyeA 133 7.40e-02 d.38.1.1 131021 2fujA 137 9.44e-02 d.38.1.1 134175 1s5uA 138 1.35e-01 d.38.1.1 98573 3ck1A 150 1.71e-01 3ir3A 148 2.75e-01 2oiwA 136 6.58e-01 d.38.1.1 148794 3c5vA 316 9.89e-01 3kg9A 296 1.34e+00 2hdwA 367 1.39e+00 2o5uA 148 1.42e+00 d.38.1.1 148616 3hm0A 167 1.56e+00 2gllA 171 1.77e+00 1t3tA 1303 2.26e+00 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 2ffsA 157 2.33e+00 d.129.3.7 133391 2j3hA 345 2.36e+00 2w2dB 431 2.39e+00 2ownA 262 2.48e+00 d.38.1.8,d.38.1.8 149045,149046 3d7rA 326 2.85e+00 2hx5A 152 2.86e+00 d.38.1.1 136837 2av9A 147 2.92e+00 d.38.1.1 127365 3khpA 311 3.22e+00 1f7lA 121 3.40e+00 1f7lA d.150.1.2 59666 3h3zA 235 3.46e+00 3e8vA 82 3.78e+00 2oafA 151 3.95e+00 d.38.1.1 148695 3hykA 122 4.42e+00 2f41A 121 5.95e+00 d.38.1.5 132904 3edmA 259 6.28e+00 1tbuA 118 6.32e+00 d.38.1.3 119223 2wirA 313 6.39e+00 1ve3A 227 9.10e+00 c.66.1.43 120010 2v1oA 151 9.94e+00 2f05A 105 1.15e+01 a.59.1.1 132651 1iq6A 134 1.16e+01 d.38.1.4 76755 1lzlA 323 1.19e+01 c.69.1.2 78306 3cfxA 296 1.19e+01 1z6gA 218 1.22e+01 1vlbA 907 1.25e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 3l22A 441 1.31e+01 1uedA 406 1.38e+01 a.104.1.1 99256 1bhgA 613 1.43e+01 1bhgA b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 2o23A 265 1.48e+01 c.2.1.2 138884 2ns9A 157 1.48e+01 d.129.3.10 148382 3hn3A 613 1.48e+01 3exzA 154 1.51e+01 2yx0A 342 1.53e+01 1z54A 132 1.54e+01 d.38.1.1 124450 3k6kA 322 1.83e+01 2dd7A 216 1.90e+01 1c7qA 445 1.93e+01 2pgi c.80.1.2 35307 2gpyA 233 2.00e+01 1ezm 301 2.07e+01 1hyt 3bgaA 1010 2.08e+01 2hljA 157 2.08e+01 d.38.1.1 136570 3a7rA 337 2.48e+01 1u4gA 301 2.58e+01 d.92.1.2 107670 3c8wA 255 2.62e+01 d.347.1.1 156053 3k2iA 422 2.62e+01 3fcdA 134 2.70e+01 1sjdA 368 2.81e+01 c.1.11.2,d.54.1.1 105632,105633 2wp8B 246 3.02e+01 1e0tA 470 3.07e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 3mgxA 415 3.08e+01 2d81A 318 3.15e+01 c.69.1.37 146471 3dnmA 336 3.18e+01 2pifA 276 3.25e+01 d.382.1.1 149509 2nvnA 122 3.35e+01 d.18.1.3 138633 1ek6A 348 3.36e+01 1xel c.2.1.2 29800 2fl4A 149 3.62e+01 d.108.1.1 133706 1su8A 636 3.83e+01 e.26.1.2 98999 3juuA 280 3.85e+01 2h7cA 542 3.88e+01 c.69.1.1 136207 3hoaA 509 3.91e+01 2fs6A 137 3.98e+01 b.60.1.2 134005 3fx3A 237 4.03e+01 3el6A 313 4.10e+01 2higA 487 4.11e+01 2ql8A 143 4.12e+01 1gnxA 479 4.12e+01 c.1.8.4 76241 3goaA 387 4.24e+01 1w5dA 462 4.35e+01 e.3.1.3 120642 1yz1A 174 4.38e+01 b.88.1.2 124264 1n6zA 105 4.41e+01 d.263.1.1 85369 3lapA 170 4.52e+01 3guaA 217 4.55e+01 3i5aA 334 4.60e+01 3lg6A 235 4.66e+01 2zvyA 183 4.68e+01 2pjsA 119 4.72e+01 d.32.1.2 149573 1u60A 310 4.73e+01 e.3.1.2 107692 2avdA 219 4.85e+01 c.66.1.1 127377 1yavA 159 5.04e+01 d.37.1.1 144629 3es4A 116 5.06e+01 1pn2A 280 5.11e+01 d.38.1.4,d.38.1.4 94930,94931 1m1zA 513 5.14e+01 c.26.2.1,d.153.1.1 78457,78458 2vvlA 495 5.44e+01 1lddA 74 5.55e+01 a.4.5.34 73841 3craA 265 5.56e+01 3da0A 136 5.58e+01 2qy9A 309 5.66e+01 a.24.13.1,c.37.1.10 151469,151470 2c4xA 260 5.71e+01 2icyA 469 5.72e+01 b.81.1.4,c.68.1.5 137257,137258 2f57A 317 5.87e+01 3h0gE 210 5.96e+01 2ftxA 90 5.97e+01 d.300.1.1 134085 2xdhA 163 6.03e+01 3ebmA 180 6.08e+01 3n5oA 235 6.10e+01 2v40A 459 6.20e+01 2drhA 361 6.21e+01 2vvmA 495 6.22e+01 1wloA 136 6.25e+01 1gp0A 143 6.26e+01 b.64.1.1 70300 1t90A 486 6.31e+01 3idqA 369 6.38e+01 1oa8A 133 6.44e+01 b.145.1.1 92698 3cox 507 6.46e+01 1b8sA 3coxA 507 6.46e+01 c.3.1.2,d.16.1.1 30332,37863 1z90A 469 6.51e+01 b.81.1.4,c.68.1.5 124732,124733 3d2lA 243 6.53e+01 2f1wA 158 6.66e+01 2po1B 277 6.67e+01 1yy6A 155 6.72e+01 1wohA 305 6.78e+01 c.42.1.1 109446 1zs7A 190 6.80e+01 b.122.1.1,d.17.6.4 125593,125594 3ea0A 245 6.91e+01 3gdpA 521 7.01e+01 1ju2A 536 7.01e+01 c.3.1.2,d.16.1.1 77169,77170 2p26A 280 7.16e+01 2ppwA 216 7.34e+01 2o9pA 454 7.58e+01 2wzpA 266 7.65e+01 3proC 166 7.75e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1wdkC 390 7.76e+01 c.95.1.1,c.95.1.1 109258,109259 3lq0A 235 7.81e+01 1q5dA 419 7.92e+01 a.104.1.1 95891 3lqnA 150 7.98e+01