# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yocA 146 2.116e-23 d.38.1.5 123778 3gekA 133 1.646e-18 1vh5A 139 4.354e-18 d.38.1.5 100642 2ov9A 204 5.633e-17 d.38.1.5 149034 2b6eA 138 6.907e-17 d.38.1.5 127986 2h4uA 122 7.274e-17 d.38.1.5 136082 2pimA 133 2.067e-16 2fs2A 133 3.549e-16 d.38.1.5 134003 1sc0A 138 1.322e-15 d.38.1.5 98796 1psuA 132 4.053e-15 d.38.1.5 88285 3f1tA 137 7.811e-15 1o0iA 138 1.624e-14 d.38.1.5 86532 1q4uA 141 1.741e-14 d.38.1.5 95828 1j1yA 117 4.489e-14 d.38.1.5 90776 1zkiA 127 7.103e-14 d.38.1.5 125199 3dkzA 126 8.394e-14 1ixlA 131 8.714e-14 d.38.1.5 90717 2cy9A 123 2.398e-13 d.38.1.5 131019 3e8pA 154 3.719e-13 3hduA 153 8.381e-13 1sh8A 154 2.383e-12 d.38.1.5 105549 2f0xA 137 7.051e-12 d.38.1.5 132673 3f5oA 139 1.726e-11 2prxA 115 3.053e-10 1vpmA 156 2.809e-09 d.38.1.1 113967 3lwgA 121 2.610e-08 2gvhA 249 1.455e-07 d.38.1.1 135776 d.38.1.1 135777 3lw3A 122 2.858e-07 2qq2A 157 1.262e-04 3bjkA 141 1.948e-04 3bbjA 269 2.630e-04 2cyeA 131 1.542e-03 d.38.1.1 131021 2q2bA 142 2.150e-03 2eisA 122 5.973e-03 2f41A 109 7.949e-03 d.38.1.5 132904 3kuvA 133 1.870e-02 3lmbA 165 3.816e-02 2v1oA 150 9.192e-02 2cwzA 139 1.015e-01 d.38.1.7 130961 1z54A 133 2.014e-01 d.38.1.1 124450 3b7kA 268 3.587e-01 2q78A 136 3.788e-01 d.38.1.7 150076 2nujA 160 3.900e-01 d.38.1.1 138608 2o5uA 145 4.238e-01 d.38.1.1 148616 1lr5A 161 7.456e-01 b.82.1.2 74215 1s5uA 130 9.984e-01 d.38.1.1 98573 2aliA 131 1.029e+00 d.38.1.1 126976 2egjA 127 1.070e+00 1tcoA 353 1.105e+00 1auiA d.159.1.3 42084 3hm0A 127 1.161e+00 1fjmA 295 1.478e+00 1auiA d.159.1.3 42082 2gf6A 135 2.465e+00 d.38.1.1 135077 1njkA 134 2.525e+00 d.38.1.1 85818 2av9A 143 3.342e+00 d.38.1.1 127365 1jyeA 272 3.438e+00 c.93.1.1 67455 2z72A 339 3.439e+00 1s95A 325 3.670e+00 d.159.1.3 105375 1u32A 294 3.779e+00 d.159.1.3 107631 1tlfA 297 3.798e+00 1tlfA c.93.1.1 35687 1g5bA 220 4.375e+00 1g5bA d.159.1.3 60261 2fujA 119 5.022e+00 d.38.1.1 134175 1jk7A 295 5.150e+00 1auiA d.159.1.3 63144 1aep 154 7.121e+00 1aep 2a8aA 406 7.261e+00 3e3mA 271 7.702e+00 1qs2A 402 7.760e+00 1qs1A d.166.1.1 42268 d.166.1.1 42269 3e7aA 294 8.041e+00 3eggA 295 8.234e+00 2wfcA 160 8.580e+00 2iksA 277 9.095e+00 3kgzA 146 9.215e+00 3dzvA 266 9.538e+00 3hpdA 255 1.016e+01 1aepA 154 1.109e+01 a.63.1.1 18139 1efaA 329 1.140e+01 1tlfA a.35.1.5 17106 c.93.1.1 35691 1qpzA 340 1.152e+01 1qpzA a.35.1.5 17097 c.93.1.1 35673 3icfA 317 1.200e+01 1i6xA 202 1.213e+01 a.4.5.4 83673 b.82.3.2 83674 3c8bA 424 1.223e+01 3hcaA 259 1.286e+01 3i7dA 158 1.297e+01 3fseA 338 1.311e+01 3hceA 258 1.338e+01 2yxtA 305 1.404e+01 1g1iA 44 1.408e+01 1g1iA h.1.13.1 45636 3bonA 417 1.410e+01 d.92.1.7 155457 2ioyA 275 1.726e+01 1vpwA 339 1.745e+01 1qpzA a.35.1.5 17087 c.93.1.1 35680 1nedA 181 1.763e+01 1nedA d.153.1.4 41974 3l2hA 159 1.806e+01 1m4yA 172 1.875e+01 d.153.1.4 84802 3mizA 282 1.910e+01 1ekqA 255 1.914e+01 1c3qA c.72.1.2 34941 1cv2A 294 1.919e+01 1bn6A c.69.1.8 34680 2h8eA 121 2.031e+01 3cs3A 267 2.244e+01 1u60A 310 2.277e+01 e.3.1.2 107692 1v73A 332 2.456e+01 2kcaA 110 2.584e+01 3ibmA 146 2.735e+01 1giqA 412 2.750e+01 d.166.1.1 76224 d.166.1.1 76225 3kzqA 207 2.861e+01 2qu7A 275 3.262e+01 2fprA 157 3.264e+01 c.108.1.19 133919 3brqA 272 3.362e+01 1c8uA 286 3.625e+01 1c8uA d.38.1.3 38547 d.38.1.3 38548 1jftA 341 3.634e+01 a.35.1.5 66652 c.93.1.1 66653 2o1kA 44 3.699e+01 3l6uA 275 3.742e+01 3h63A 316 3.810e+01 1ysqA 182 3.850e+01 3czdA 308 3.880e+01 1esjA 285 3.921e+01 1c3qA c.72.1.2 34943