# List of top-scoring protein chains for t2k.w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b6eA 146 8.40e-15 d.38.1.5 127986 1sc0A 138 8.41e-15 d.38.1.5 98796 1vh5A 148 5.88e-14 d.38.1.5 100642 1sbkA 144 7.82e-14 d.38.1.5 98791 1zkiA 133 1.75e-13 d.38.1.5 125199 1vh9A 149 1.98e-13 d.38.1.5 100653 3e1eA 141 2.90e-13 3dkzA 142 6.93e-13 1psuA 140 1.62e-12 d.38.1.5 88285 2fs2A 151 1.65e-12 d.38.1.5 134003 3e8pA 164 3.61e-12 3e29A 144 4.28e-12 3f1tA 148 4.40e-12 2h4uA 145 6.10e-12 d.38.1.5 136082 3f5oA 148 7.34e-12 2f0xA 148 7.34e-12 d.38.1.5 132673 1wluA 136 1.64e-11 d.38.1.5 121015 1j1yA 136 1.64e-11 d.38.1.5 90776 2cy9A 140 1.66e-11 d.38.1.5 131019 2pimA 141 2.03e-11 2dslA 136 3.20e-11 1q4uA 151 1.44e-10 d.38.1.5 95828 2ov9A 216 2.42e-10 d.38.1.5 149034 3hduA 157 3.24e-10 2hboA 158 3.40e-09 d.38.1.5 136319 3gekA 146 1.21e-08 2qwzA 159 2.35e-08 2prxA 160 1.33e-07 1yocA 147 8.32e-07 d.38.1.5 123778 1ixlA 131 1.34e-06 d.38.1.5 90717 1sh8A 154 3.68e-06 d.38.1.5 105549 2eisA 133 9.81e-06 2gvhA 288 3.16e-05 d.38.1.1 135776 d.38.1.1 135777 3d6lA 137 3.53e-05 1yliA 153 5.36e-05 d.38.1.1 123651 2qq2A 193 7.55e-05 2q2bA 179 8.34e-05 1vpmA 169 2.78e-04 d.38.1.1 113967 3lwgA 145 4.78e-04 3bjkA 153 5.87e-04 3lw3A 145 6.92e-04 3kviA 139 1.11e-03 2cyeA 133 1.48e-03 d.38.1.1 131021 1njkA 156 1.70e-03 d.38.1.1 85818 3kuvA 139 2.73e-03 1y7uA 174 3.29e-03 d.38.1.1 122722 3kv7A 139 4.06e-03 3lmbA 165 7.10e-03 2cwzA 141 9.79e-03 d.38.1.7 130961 1t82A 155 1.15e-02 d.38.1.5 106639 1u1zA 168 1.18e-02 d.38.1.6 107602 3bbjA 272 1.90e-02 2v1oA 151 2.86e-02 3b7kA 333 2.90e-02 3k67A 159 3.56e-02 1q6wA 161 4.57e-02 d.38.1.4 96000 2f3xA 157 5.01e-02 d.38.1.5 132901 2f41A 121 5.03e-02 d.38.1.5 132904 3ir3A 148 8.50e-02 3ck1A 150 1.09e-01 3d6xA 146 1.25e-01 1s5uA 138 2.19e-01 d.38.1.1 98573 2fujA 137 2.88e-01 d.38.1.1 134175 1c8uA 285 2.95e-01 1c8uA d.38.1.3 38547 d.38.1.3 38548 1z54A 132 4.02e-01 d.38.1.1 124450 2oiwA 136 8.28e-01 d.38.1.1 148794 2rhrA 277 8.64e-01 3csdA 281 8.68e-01 3hm0A 167 9.71e-01 2oafA 151 1.09e+00 d.38.1.1 148695 1iq6A 134 1.10e+00 d.38.1.4 76755 3kg8A 308 1.37e+00 1f80A 120 2.01e+00 1f7lA d.150.1.2 59683 1x7gA 261 2.06e+00 c.2.1.2 114929 2rhcA 277 2.14e+00 c.2.1.2 152048 1w4zA 281 2.15e+00 c.2.1.2 114195 1f7lA 121 2.37e+00 1f7lA d.150.1.2 59666 1f7tA 122 2.52e+00 1f7lA d.150.1.2 59667 3exzA 154 2.83e+00 1oypA 245 2.95e+00 d.14.1.4 93734 d.101.1.1 93735 1oysA 245 3.22e+00 d.14.1.4 93758 d.101.1.1 93759 2gllA 171 4.87e+00 1bykA 255 5.22e+00 1bykA c.93.1.1 35706 3b49A 211 5.45e+00 1qwgA 251 5.59e+00 c.1.27.1 96473 2av9A 147 5.60e+00 d.38.1.1 127365 2o5uA 148 5.62e+00 d.38.1.1 148616 2o6tA 149 5.73e+00 d.38.1.1 148637 3dp1A 159 5.76e+00 2glvA 171 5.77e+00 2ielA 138 5.88e+00 c.26.2.4 147649 2dp9A 124 6.28e+00 b.122.1.5 131609 2w2dB 431 6.56e+00 1z6bA 154 6.89e+00 d.38.1.6 124510 2hljA 157 7.80e+00 d.38.1.1 136570 1wk2A 121 8.37e+00 b.122.1.5 114720 2yxlA 450 8.61e+00 3cjyA 259 1.01e+01 3bnvA 152 1.05e+01 3hctA 118 1.10e+01 3esiA 129 1.18e+01 3hykA 122 1.20e+01 2kgtA 72 1.21e+01 2rauA 354 1.24e+01 2fmlA 273 1.25e+01 a.4.5.68 133778 d.113.1.6 133779 1zba3 221 1.25e+01 1v9jA 113 1.32e+01 d.52.6.1 100542 1oc2A 348 1.35e+01 c.2.1.2 92765 1sy7A 715 1.44e+01 c.23.16.3 112161 1llnA 262 1.54e+01 d.165.1.1 84625 3fm3A 358 1.57e+01 3d6nA 422 1.59e+01 3fldA 153 1.60e+01 2c2iA 151 1.62e+01 d.38.1.4 129670 1g0hA 252 1.92e+01 1dk4A e.7.1.1 60171 1dk4A 252 1.92e+01 1dk4A e.7.1.1 42970 2wjnH 258 1.93e+01 1dxrH 258 1.93e+01 6prcH b.41.1.1 25456 f.23.10.1 43433 2i5nH 258 1.93e+01 b.41.1.1 137064 f.23.10.1 137065 2h8qA 217 1.94e+01 3g7fH 258 1.95e+01 2nyyA 1295 2.07e+01 2ffsA 157 2.09e+01 d.129.3.7 133391 1bhdA 118 2.25e+01 1bkrA a.40.1.1 17398 2ep6A 133 2.25e+01 b.7.1.1 146970 3dd6A 255 2.28e+01 1udoA 255 2.28e+01 d.14.1.4 99215 d.101.1.1 99216 2qs8A 418 2.28e+01 b.92.1.9 151311 c.1.9.18 151312 1udnA 255 2.29e+01 d.14.1.4 99213 d.101.1.1 99214 1ys5A 164 2.32e+01 f.4.1.3 123956 1kjqA 391 2.33e+01 b.84.2.1 72616 c.30.1.1 72617 d.142.1.2 72618 1eyzA 392 2.33e+01 1ez1A b.84.2.1 28246 c.30.1.1 31653 d.142.1.2 41498 1ez1A 392 2.33e+01 1ez1A b.84.2.1 28248 c.30.1.1 31655 d.142.1.2 41500 3bgaA 1010 2.34e+01 1udsA 255 2.34e+01 d.14.1.4 99219 d.101.1.1 99220 3goaA 387 2.36e+01 2c4xA 260 2.36e+01 2gf6A 135 2.46e+01 d.38.1.1 135077 2jxmB 249 2.56e+01 i.4.1.1 148236 2conA 79 2.57e+01 g.41.15.1 130680 1xrtA 467 2.61e+01 b.92.1.3 122258 c.1.9.6 122259 2ownA 262 2.63e+01 d.38.1.8 149045 d.38.1.8 149046 3idqA 369 2.64e+01 3cl3A 183 2.78e+01 3edmA 259 2.79e+01 3cm0A 186 2.79e+01 2boyA 254 2.99e+01 3lnnA 359 3.17e+01 1zgpA 223 3.18e+01 2pzhA 135 3.19e+01 2ra8A 362 3.21e+01 2b0pA 134 3.51e+01 2b44A 133 3.51e+01 2q78A 153 3.62e+01 d.38.1.7 150076 2o5xH 227 3.65e+01 3hn3A 613 3.69e+01 1bhgA 613 3.69e+01 1bhgA b.1.4.1 22161 b.18.1.5 23766 c.1.8.3 28889 2qorA 204 3.72e+01 3iteA 562 3.73e+01 1azoA 232 3.78e+01 c.52.1.14 33329 2azoA 232 3.79e+01 1azo c.52.1.14 33330 1v1aA 309 3.89e+01 c.72.1.1 100249 2pn5A 1325 3.94e+01 2cofA 107 3.95e+01 b.55.1.1 130676 1zhgA 139 3.99e+01 d.38.1.6 125093