PFRMAT SS
TARGET T0632
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0632.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1373
METHOD
MODEL 1
M C 0.728
D H 0.556
K H 0.758
R H 0.830
L H 0.778
Q H 0.753
Q H 0.766
D C 0.436
R H 0.560
I H 0.788
V H 0.800
D H 0.838
K H 0.811
M H 0.721
E H 0.654
R H 0.493
F C 0.428
L T 0.495
S T 0.434
T H 0.442
A H 0.545
N H 0.558
E H 0.574
E H 0.476
E H 0.504
K H 0.425
D T 0.359
V T 0.369
L C 0.434
S C 0.537
S H 0.643
I H 0.760
V H 0.795
D H 0.823
G H 0.878
L H 0.861
L H 0.796
A H 0.814
K H 0.774
Q H 0.730
E H 0.396
R C 0.393
R T 0.346
Y T 0.414
A T 0.419
T T 0.468
Y T 0.389
L H 0.458
A H 0.465
S H 0.455
L H 0.434
T C 0.334
Q C 0.765
I E 0.466
E E 0.904
S E 0.973
Q E 0.968
E E 0.942
R E 0.778
E T 0.753
D T 0.925
G T 0.902
R E 0.704
F E 0.964
E E 0.991
V E 0.989
R E 0.965
L E 0.775
P C 0.455
I C 0.731
G C 0.567
P G 0.479
L G 0.525
V G 0.511
N T 0.358
N T 0.495
P T 0.661
L T 0.667
N T 0.557
M E 0.517
V E 0.667
H E 0.385
G H 0.533
G H 0.821
I H 0.927
T H 0.964
A H 0.972
T H 0.946
L H 0.946
L H 0.916
D H 0.883
T H 0.927
A H 0.918
M H 0.934
G H 0.935
Q H 0.942
M H 0.956
V H 0.929
N H 0.849
R H 0.804
Q H 0.475
L C 0.621
P T 0.834
D T 0.899
G T 0.926
Q T 0.709
S E 0.646
A E 0.896
V E 0.929
T E 0.955
S E 0.948
E E 0.971
L E 0.960
N E 0.957
I E 0.945
H E 0.873
Y E 0.839
V E 0.803
K E 0.781
P E 0.575
G T 0.525
M T 0.709
G T 0.878
T T 0.608
Y E 0.774
L E 0.966
R E 0.985
A E 0.991
V E 0.990
A E 0.987
S E 0.988
I E 0.983
V E 0.969
H E 0.875
Q T 0.515
G T 0.873
K T 0.742
Q E 0.774
R E 0.962
I E 0.983
V E 0.993
V E 0.992
E E 0.994
G E 0.991
K E 0.987
V E 0.960
Y E 0.924
T T 0.590
D T 0.983
Q T 0.991
G T 0.953
E E 0.646
T E 0.962
V E 0.991
A E 0.993
M E 0.990
G E 0.984
T E 0.986
G E 0.984
S E 0.987
F E 0.988
F E 0.971
V E 0.933
L E 0.648
R C 0.506
S C 0.696
R C 0.761
G C 0.825
END