PFRMAT SS
TARGET T0632
AUTHOR SAM-T02-server
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0632.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1373
METHOD
MODEL 1
M C 0.997
D C 0.589
K H 0.340
R H 0.448
L H 0.519
Q H 0.543
Q H 0.498
D H 0.382
R H 0.596
I H 0.702
V H 0.646
D H 0.653
K H 0.613
M H 0.543
E H 0.498
R H 0.425
F C 0.534
L T 0.307
S T 0.342
T H 0.286
A H 0.370
N H 0.426
E H 0.432
E H 0.482
E H 0.503
K H 0.417
D H 0.311
V T 0.316
L C 0.499
S C 0.650
S H 0.591
I H 0.758
V H 0.813
D H 0.893
G H 0.891
L H 0.892
L H 0.875
A H 0.865
K H 0.766
Q H 0.487
E T 0.345
R C 0.364
R C 0.433
Y C 0.336
A S 0.319
T C 0.369
Y H 0.331
L H 0.447
A H 0.342
S G 0.317
L G 0.251
T T 0.329
Q C 0.367
I E 0.556
E E 0.872
S E 0.942
Q E 0.968
E E 0.954
R E 0.784
E E 0.410
D T 0.879
G T 0.848
R E 0.683
F E 0.970
E E 0.995
V E 0.991
R E 0.978
L E 0.890
P E 0.580
I C 0.491
G C 0.741
P T 0.375
L G 0.423
V G 0.387
N H 0.260
N T 0.349
P C 0.507
L H 0.397
N H 0.548
M H 0.879
V H 0.971
H H 0.978
G H 0.989
G H 0.992
I H 0.998
T H 0.998
A H 0.996
T H 0.991
L H 0.991
L H 0.990
D H 0.991
T H 0.986
A H 0.985
M H 0.967
G H 0.962
Q H 0.958
M H 0.961
V H 0.913
N H 0.783
R H 0.594
Q H 0.382
L C 0.540
P C 0.738
D T 0.729
G T 0.694
Q C 0.487
S E 0.605
A E 0.828
V E 0.879
T E 0.915
S E 0.946
E E 0.973
L E 0.963
N E 0.949
I E 0.923
H E 0.927
Y E 0.951
V E 0.930
K E 0.886
P E 0.654
G C 0.539
M T 0.518
G T 0.744
T S 0.405
Y E 0.610
L E 0.954
R E 0.989
A E 0.992
V E 0.993
A E 0.987
S E 0.985
I E 0.960
V E 0.917
H E 0.728
Q T 0.818
G T 0.836
K S 0.345
Q E 0.628
R E 0.938
I E 0.980
V E 0.988
V E 0.989
E E 0.989
G E 0.982
K E 0.987
V E 0.978
Y E 0.952
T E 0.593
D T 0.873
Q T 0.945
G S 0.477
E E 0.562
T E 0.938
V E 0.972
A E 0.986
M E 0.986
G E 0.989
T E 0.989
G E 0.972
S E 0.972
F E 0.969
F E 0.971
V E 0.934
L E 0.750
R C 0.473
S C 0.554
R C 0.689
G C 0.916
END