# List of top-scoring protein chains for t2k.100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b6eA 146 3.58e-16 d.38.1.5 127986 1sc0A 138 3.87e-16 d.38.1.5 98796 1o0iA 138 4.03e-16 d.38.1.5 86532 1vh5A 148 1.31e-15 d.38.1.5 100642 1zkiA 133 3.21e-14 d.38.1.5 125199 1psuA 140 3.51e-14 d.38.1.5 88285 2fs2A 151 3.79e-14 d.38.1.5 134003 2f0xA 148 6.56e-14 d.38.1.5 132673 3f5oA 148 6.87e-14 3e1eA 141 8.18e-14 2h4uA 145 8.39e-14 d.38.1.5 136082 3dkzA 142 9.01e-14 3e29A 144 1.84e-13 1j1yA 136 4.27e-13 d.38.1.5 90776 1wluA 136 4.59e-13 d.38.1.5 121015 1q4uA 151 6.13e-13 d.38.1.5 95828 2pimA 141 7.87e-13 3f1tA 148 1.20e-12 3hduA 157 4.67e-12 3e8pA 164 5.16e-12 2ov9A 216 2.44e-11 d.38.1.5 149034 2cy9A 140 1.42e-10 d.38.1.5 131019 3gekA 146 2.50e-10 2hboA 158 1.79e-09 d.38.1.5 136319 1yocA 147 2.13e-09 d.38.1.5 123778 1ixlA 131 7.94e-09 d.38.1.5 90717 2prxA 160 8.62e-09 1sh8A 154 1.66e-08 d.38.1.5 105549 2eisA 133 1.75e-07 1t82A 155 1.34e-06 d.38.1.5 106639 2qq2A 193 2.14e-06 3lwgA 145 2.79e-06 3lw3A 145 3.35e-06 3lmbA 165 4.81e-06 1njkA 156 4.92e-06 d.38.1.1 85818 2cyeA 133 6.24e-06 d.38.1.1 131021 2cwzA 141 9.20e-06 d.38.1.7 130961 1u1zA 168 1.01e-05 d.38.1.6 107602 1yliA 153 1.06e-05 d.38.1.1 123651 3bjkA 153 1.22e-05 2q2bA 179 1.22e-05 3b7kA 333 3.01e-05 3bbjA 272 3.86e-05 3kuvA 139 5.36e-05 1vpmA 169 7.01e-05 d.38.1.1 113967 2gvhA 288 9.44e-05 d.38.1.1 135776 d.38.1.1 135777 2fujA 137 1.12e-04 d.38.1.1 134175 2gllA 171 1.14e-04 1s5uA 138 1.24e-04 d.38.1.1 98573 3ck1A 150 1.29e-04 2v1oA 151 1.70e-04 1z54A 132 2.35e-04 d.38.1.1 124450 3k67A 159 2.63e-04 2b3nA 159 2.71e-04 d.38.1.4 127792 3ir3A 148 3.36e-04 2f41A 121 3.48e-04 d.38.1.5 132904 2oiwA 136 4.02e-04 d.38.1.1 148794 3kg8A 308 4.49e-04 2o5uA 148 6.35e-04 d.38.1.1 148616 2av9A 147 8.72e-04 d.38.1.1 127365 1iq6A 134 1.19e-03 d.38.1.4 76755 1c8uA 285 1.22e-03 1c8uA d.38.1.3 38547 d.38.1.3 38548 3cjyA 259 1.71e-03 2hljA 157 1.83e-03 d.38.1.1 136570 2oafA 151 3.28e-03 d.38.1.1 148695 3exzA 154 3.37e-03 1z6bA 154 4.00e-03 d.38.1.6 124510 3hm0A 167 5.53e-03 3bnvA 152 7.38e-03 2essA 248 1.00e-02 d.38.1.8 132346 d.38.1.8 132347 2aliA 158 1.28e-02 d.38.1.1 126976 2egjA 128 1.64e-02 1tbuA 118 1.90e-02 d.38.1.3 119223 2hx5A 152 2.04e-02 d.38.1.1 136837 2gf6A 135 2.47e-02 d.38.1.1 135077 3esiA 129 3.91e-02 2q78A 153 5.24e-02 d.38.1.7 150076 2pzhA 135 5.47e-02 2ownA 262 7.14e-02 d.38.1.8 149045 d.38.1.8 149046 1lo7A 141 7.22e-02 d.38.1.1 74144 2nujA 163 1.12e-01 d.38.1.1 138608 1bvqA 141 1.20e-01 1bvqA d.38.1.1 38542 2w3xA 147 1.66e-01 1mkaA 171 1.68e-01 1mkaA d.38.1.2 38543 3kg9A 296 1.95e-01 2c2iA 151 3.32e-01 d.38.1.4 129670 3el6A 313 3.51e-01 3khpA 311 4.96e-01 3bgaA 1010 6.02e-01 2bi0A 337 6.43e-01 d.38.1.4 128565 d.38.1.4 128566 2ns9A 157 1.58e+00 d.129.3.10 148382 1zo2A 129 1.59e+00 d.17.4.2 146021 3b49A 211 1.82e+00 2ffsA 157 1.92e+00 d.129.3.7 133391 3dkcA 317 2.46e+00 3fxtA 113 2.78e+00 2w01A 208 2.88e+00 1g0dA 695 3.92e+00 1f13A b.1.18.9 60166 b.1.5.1 60167 b.1.5.1 60168 d.3.1.4 60169 1yycA 174 4.02e+00 3mtxA 151 4.07e+00 1q7lA 198 4.65e+00 c.56.5.4 96044 3bk5A 237 4.76e+00 2ccvA 101 4.94e+00 b.154.1.1 130258 3hn3A 613 5.94e+00 2w0mA 235 6.07e+00 3lk41 286 6.54e+00 3lq8A 302 7.00e+00 2jkgA 179 7.46e+00 3mmhA 167 8.53e+00 2fs6A 137 8.55e+00 b.60.1.2 134005 3dg6A 367 8.68e+00 1n3gA 113 9.23e+00 d.204.1.1 79962 3lduA 385 9.58e+00 1ygaA 342 9.75e+00 1yjrA 75 9.98e+00 1e0tA 470 1.01e+01 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 2jc7A 244 1.15e+01 3g4pA 244 1.24e+01 2g7bA 137 1.24e+01 1mtpA 323 1.28e+01 e.1.1.1 85107 3a0yA 152 1.30e+01 1n9pA 207 1.33e+01 b.1.18.16 80343 1zthA 258 1.37e+01 2ausA 334 1.39e+01 2vjvA 159 1.40e+01 d.58.57.1 153201 3lm4A 339 1.41e+01 1xocA 520 1.42e+01 c.94.1.1 122201 2ivwA 113 1.47e+01 1qjpA 171 1.49e+01 1bxwA f.4.1.1 43742 1y10A 407 1.50e+01 3dcdA 307 1.51e+01 3f14A 112 1.52e+01 2vjgA 154 1.54e+01 2wqlA 154 1.54e+01 1wzaA 488 1.56e+01 b.71.1.1 121489 c.1.8.1 121490 2f57A 317 1.64e+01 3hbrA 265 1.67e+01 3brbA 313 1.71e+01 3eliA 152 1.75e+01 d.129.3.5 158184 1vrbA 342 1.79e+01 b.82.2.11 120450 2fhfA 1083 1.79e+01 b.1.18.2 147035 b.1.18.2 147036 b.3.1.3 147037 b.71.1.1 147038 c.1.8.1 147039 1vr5A 547 1.82e+01 c.94.1.1 120437 2p19A 149 1.87e+01 d.190.1.2 149156 1g87A 614 1.90e+01 a.102.1.2 83275 b.2.2.2 83276 3mr7A 189 1.91e+01 1ry9A 145 1.92e+01 d.198.1.1 98094 3f95A 193 1.97e+01 3fv7A 244 1.99e+01 3f1vA 366 2.00e+01 1ohpA 125 2.01e+01 d.17.4.3 118702 2q7aA 152 2.02e+01 2cirA 297 2.05e+01 1lwjA 441 2.05e+01 b.71.1.1 74303 c.1.8.1 74304 1aqb 183 2.07e+01 1aqb 1bxwA 172 2.15e+01 1bxwA f.4.1.1 43743 2obdA 476 2.17e+01 3fldA 153 2.19e+01 2hbpA 68 2.20e+01 2gr8A 99 2.21e+01 d.24.1.4 135522 3dy0A 336 2.27e+01 1j1bA 420 2.38e+01 d.144.1.7 90758 3htyA 94 2.42e+01 2fm8A 135 2.43e+01 d.198.1.1 133767 1kn0A 212 2.44e+01 d.50.1.3 77444 1xttA 216 2.45e+01 c.61.1.1 122300 3c96A 415 2.51e+01 c.3.1.2 156122 d.16.1.2 156123 2v94A 107 2.53e+01 d.12.1.3 152795 1f1sA 814 2.55e+01 a.102.3.2 64928 b.1.18.2 64929 b.24.1.1 64930 b.30.5.2 64931 2polA 366 2.58e+01 2polA d.131.1.1 41356 d.131.1.1 41357 d.131.1.1 41358 1u5rA 348 2.60e+01 d.144.1.7 113050 3d1gA 366 2.63e+01 d.131.1.1 157200 d.131.1.1 157201 d.131.1.1 157202 1ab8A 220 2.65e+01 1azsA d.58.29.1 39414 1h2iA 209 2.69e+01 d.50.1.3 76550 3a4pA 319 2.70e+01 1ok7A 366 2.71e+01 d.131.1.1 103992 d.131.1.1 103993 d.131.1.1 103994 2pa8L 92 2.76e+01 3dxoA 121 2.77e+01 d.17.4.19 157933 1y9wA 140 2.79e+01 d.108.1.1 122783 1xkpB 124 2.81e+01 d.198.1.1 122087 2ac3A 316 2.83e+01 3fiqA 157 2.84e+01 1voqa 90 2.84e+01 1ckiA 317 2.89e+01 1csn d.144.1.7 41660 3fcdA 134 2.91e+01 3d0fA 106 2.91e+01 1v8bA 479 2.92e+01 c.2.1.4 113564 c.23.12.3 113565 3dhuA 449 2.92e+01 3klqA 141 2.93e+01 2wb7A 526 2.96e+01 3luqA 114 2.98e+01 3cox 507 2.99e+01 1b8sA 3coxA 507 2.99e+01 c.3.1.2 30332 d.16.1.1 37863 3bwlA 126 3.00e+01 2r6vA 191 3.00e+01 1xkpC 143 3.06e+01 d.198.1.1 122088 2aqpA 164 3.07e+01 1kutA 230 3.11e+01 d.143.1.1 73017 1kt6A 183 3.11e+01 b.60.1.1 84466 2grvA 621 3.20e+01 3k9dA 464 3.22e+01 2r41A 110 3.27e+01 1iznA 286 3.27e+01 e.43.1.1 83847 1f2hA 169 3.31e+01 1f3vA d.58.22.1 59612 2aj6A 159 3.31e+01 d.108.1.1 126841 2kdyA 261 3.41e+01 1pn2A 280 3.47e+01 d.38.1.4 94930 d.38.1.4 94931 1r3eA 309 3.50e+01 b.122.1.1 96907 d.265.1.2 96908 2vgpA 284 3.52e+01 1tf4A 605 3.53e+01 1tf4A a.102.1.2 18827 b.2.2.2 22393 1l4sA 112 3.54e+01 d.204.1.1 77693 3cfxA 296 3.60e+01 2hi2A 158 3.64e+01 2wd6A 349 3.65e+01 2aqqA 164 3.66e+01 2nv4A 147 3.67e+01 1do6A 124 3.69e+01 1do6A b.1.13.1 22361 3ctrA 101 3.70e+01 2vgoA 284 3.72e+01 1hbq 183 3.73e+01 1aqb 1jzuA 157 3.76e+01 b.60.1.1 84271 1r0pA 312 3.79e+01 d.144.1.7 96734 3proC 166 3.81e+01 3proC d.52.1.1 38812 d.52.1.1 38813 3lywA 90 3.84e+01 2fhxA 246 3.86e+01 2gv8A 447 3.88e+01 c.3.1.5 135759 c.3.1.5 135760 1k8wA 327 3.88e+01 b.122.1.1 83094 d.265.1.2 90388 1ocvA 125 3.91e+01 d.17.4.3 86810 1z45A 699 3.92e+01 b.30.5.4 124427 c.2.1.2 124428 3kewA 241 3.94e+01 2x4zA 296 3.97e+01 2bfxA 284 3.98e+01 3khnA 174 3.99e+01