# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sc0A 138 1.25e-18 d.38.1.5 98796 1o0iA 138 1.26e-18 d.38.1.5 86532 2b6eA 146 1.61e-18 d.38.1.5 127986 1vh5A 148 7.11e-18 d.38.1.5 100642 1zkiA 133 1.90e-16 d.38.1.5 125199 3e1eA 141 3.98e-16 2fs2A 151 6.69e-16 d.38.1.5 134003 1psuA 140 6.72e-16 d.38.1.5 88285 3dkzA 142 1.42e-15 3f5oA 148 1.73e-15 2f0xA 148 1.87e-15 d.38.1.5 132673 2h4uA 145 2.24e-15 d.38.1.5 136082 3e29A 144 4.55e-15 2pimA 141 1.12e-14 1j1yA 136 1.65e-14 d.38.1.5 90776 3f1tA 148 1.78e-14 1wluA 136 2.02e-14 d.38.1.5 121015 1q4uA 151 2.63e-14 d.38.1.5 95828 3e8pA 164 3.66e-14 2ov9A 216 1.01e-13 d.38.1.5 149034 3hduA 157 1.62e-13 2cy9A 140 3.33e-12 d.38.1.5 131019 3gekA 146 2.96e-11 2hboA 158 6.78e-11 d.38.1.5 136319 1yocA 147 2.39e-10 d.38.1.5 123778 2prxA 160 1.28e-09 1ixlA 131 2.15e-09 d.38.1.5 90717 1sh8A 154 2.83e-09 d.38.1.5 105549 2eisA 133 6.22e-09 1yliA 153 5.94e-07 d.38.1.1 123651 2qq2A 193 6.45e-07 1t82A 155 1.23e-06 d.38.1.5 106639 3bjkA 153 1.26e-06 2q2bA 179 1.97e-06 1njkA 156 2.01e-06 d.38.1.1 85818 2cyeA 133 2.54e-06 d.38.1.1 131021 2gvhA 288 2.73e-06 d.38.1.1 135776 d.38.1.1 135777 1u1zA 168 4.90e-06 d.38.1.6 107602 3lwgA 145 7.55e-06 3b7kA 333 8.89e-06 2cwzA 141 8.94e-06 d.38.1.7 130961 3lmbA 165 9.11e-06 1vpmA 169 9.36e-06 d.38.1.1 113967 3lw3A 145 9.44e-06 3kuvA 139 2.47e-05 3bbjA 272 7.14e-05 2fujA 137 1.70e-04 d.38.1.1 134175 3ck1A 150 1.93e-04 3k67A 159 2.14e-04 2b3nA 159 2.16e-04 d.38.1.4 127792 2v1oA 151 2.18e-04 1z54A 132 2.52e-04 d.38.1.1 124450 1s5uA 138 2.97e-04 d.38.1.1 98573 3ir3A 148 4.15e-04 2f41A 121 4.74e-04 d.38.1.5 132904 3kg8A 308 5.39e-04 2oiwA 136 5.96e-04 d.38.1.1 148794 2gllA 171 7.06e-04 3exzA 154 1.24e-03 1c8uA 285 1.63e-03 1c8uA d.38.1.3 38547 d.38.1.3 38548 1iq6A 134 1.69e-03 d.38.1.4 76755 2o5uA 148 2.22e-03 d.38.1.1 148616 2av9A 147 2.70e-03 d.38.1.1 127365 2oafA 151 2.71e-03 d.38.1.1 148695 3hm0A 167 3.70e-03 3esiA 129 4.55e-03 2hljA 157 5.62e-03 d.38.1.1 136570 1z6bA 154 1.06e-02 d.38.1.6 124510 3bnvA 152 1.58e-02 3cjyA 259 2.18e-02 3kg9A 296 2.29e-02 2gf6A 135 2.46e-02 d.38.1.1 135077 1tbuA 118 3.33e-02 d.38.1.3 119223 2ownA 262 4.64e-02 d.38.1.8 149045 d.38.1.8 149046 2essA 248 5.67e-02 d.38.1.8 132346 d.38.1.8 132347 2aliA 158 6.14e-02 d.38.1.1 126976 2pzhA 135 1.05e-01 2q78A 153 1.24e-01 d.38.1.7 150076 2hx5A 152 1.58e-01 d.38.1.1 136837 2egjA 128 1.77e-01 2nujA 163 3.25e-01 d.38.1.1 138608 1lo7A 141 6.15e-01 d.38.1.1 74144 2c2iA 151 7.73e-01 d.38.1.4 129670 3bgaA 1010 7.94e-01 1yycA 174 9.54e-01 1bvqA 141 9.71e-01 1bvqA d.38.1.1 38542 2w3xA 147 1.16e+00 3el6A 313 1.19e+00 3khpA 311 1.23e+00 1g0dA 695 1.39e+00 1f13A b.1.18.9 60166 b.1.5.1 60167 b.1.5.1 60168 d.3.1.4 60169 1mkaA 171 1.40e+00 1mkaA d.38.1.2 38543 1zo2A 129 1.64e+00 d.17.4.2 146021 3dkcA 317 1.89e+00 3hn3A 613 1.97e+00 1q52A 314 2.24e+00 c.14.1.3 95846 2w80C 253 2.52e+00 2jkgA 179 2.86e+00 3b49A 211 3.10e+00 2gr8A 99 3.41e+00 d.24.1.4 135522 3mmhA 167 3.44e+00 3mtxA 151 4.10e+00 2qq5A 260 4.22e+00 2bi0A 337 4.22e+00 d.38.1.4 128565 d.38.1.4 128566 3bwlA 126 4.33e+00 3kldA 384 4.71e+00 1q7lA 198 4.79e+00 c.56.5.4 96044 3fldA 153 4.83e+00 2ns9A 157 5.18e+00 d.129.3.10 148382 2oklA 185 5.52e+00 1o0wA 252 5.87e+00 a.149.1.1 80751 d.50.1.1 80752 2r78A 117 6.48e+00 3htyA 94 6.87e+00 2kdyA 261 7.16e+00 3lzfH 230 7.26e+00 2fhxA 246 7.64e+00 1kt6A 183 7.69e+00 b.60.1.1 84466 2w01A 208 9.19e+00 1xnb 185 9.24e+00 1axkA 2dcyA 185 9.29e+00 b.29.1.11 131388 2z79A 185 9.31e+00 1bhgA 613 9.39e+00 1bhgA b.1.4.1 22161 b.18.1.5 23766 c.1.8.3 28889 3lq8A 302 9.44e+00 2polA 366 9.85e+00 2polA d.131.1.1 41356 d.131.1.1 41357 d.131.1.1 41358 3hvnA 508 9.90e+00 1n3gA 113 1.01e+01 d.204.1.1 79962 1yjrA 75 1.05e+01 2np9A 440 1.08e+01 1q7fA 286 1.10e+01 b.68.9.1 96036 3eerA 148 1.14e+01 3brbA 313 1.15e+01 2rh7A 239 1.17e+01 d.22.1.1 152030 3cox 507 1.22e+01 1b8sA 3coxA 507 1.22e+01 c.3.1.2 30332 d.16.1.1 37863 3fbuA 168 1.25e+01 1xvqA 175 1.29e+01 c.47.1.10 116094 2jksA 315 1.29e+01 3fxtA 113 1.30e+01 3l95B 227 1.30e+01 1aqb 183 1.31e+01 1aqb 3d1gA 366 1.32e+01 d.131.1.1 157200 d.131.1.1 157201 d.131.1.1 157202 1ok7A 366 1.33e+01 d.131.1.1 103992 d.131.1.1 103993 d.131.1.1 103994 1wz8A 264 1.39e+01 c.14.1.3 121483 1voqa 90 1.42e+01 2r2cA 183 1.44e+01 1dmhA 311 1.45e+01 1dmhA b.3.6.1 22633 3dg6A 367 1.47e+01 3cfxA 296 1.47e+01 2g7bA 137 1.48e+01 1l4sA 112 1.52e+01 d.204.1.1 77693 3proC 166 1.53e+01 3proC d.52.1.1 38812 d.52.1.1 38813 2k75A 106 1.59e+01 3hnqA 144 1.59e+01 1ad9B 219 1.60e+01 1gc1H b.1.1.1 20215 b.1.1.2 21227 2vw9A 134 1.61e+01 1hbq 183 1.65e+01 1aqb 2owpA 129 1.67e+01 d.17.4.18 149049 3f1vA 366 1.67e+01 1mtpA 323 1.68e+01 e.1.1.1 85107 1vrbA 342 1.68e+01 b.82.2.11 120450 1ohpA 125 1.68e+01 d.17.4.3 118702 2wnwA 447 1.69e+01 2dj5A 133 1.69e+01 c.92.1.3 131536 1ry9A 145 1.69e+01 d.198.1.1 98094 2boyA 254 1.70e+01 2p19A 149 1.71e+01 d.190.1.2 149156 1n4wA 504 1.71e+01 c.3.1.2 91676 d.16.1.1 91677 1zhhB 242 1.73e+01 d.110.6.3 144740 2ganA 190 1.78e+01 d.108.1.1 134889 2fs6A 137 1.78e+01 b.60.1.2 134005 3husC 311 1.79e+01 3l22A 441 1.82e+01 1pmi 440 1.83e+01 1pmi 1pmiA 440 1.83e+01 b.82.1.3 28114 3huhA 152 1.90e+01 1b4vA 504 1.91e+01 1b8sA c.3.1.2 30334 d.16.1.1 37865 1w6nA 134 1.92e+01 b.29.1.3 114275 3dlrA 202 1.95e+01 1b8sA 504 1.96e+01 1b8sA c.3.1.2 30335 d.16.1.1 37866 1lqyA 184 1.96e+01 d.167.1.1 74212 3holA 509 2.04e+01 2ffsA 157 2.14e+01 d.129.3.7 133391 1wzaA 488 2.16e+01 b.71.1.1 121489 c.1.8.1 121490 3l6iA 181 2.20e+01 3laoA 258 2.21e+01 2z8vA 335 2.26e+01 1sdjA 310 2.27e+01 d.21.1.2 98807 d.21.1.2 98808 1n9pA 207 2.32e+01 b.1.18.16 80343 3g4pA 244 2.36e+01 2w38A 438 2.36e+01 3k9dA 464 2.37e+01 1o9yA 84 2.39e+01 b.139.1.1 92692 2vgpA 284 2.39e+01 2jc7A 244 2.40e+01 3fib 249 2.46e+01 3fib 3fibA 249 2.46e+01 d.171.1.1 42455 2fibA 269 2.46e+01 3fib d.171.1.1 42457 2vgoA 284 2.48e+01 1ijhA 504 2.57e+01 c.3.1.2 66161 d.16.1.1 66162 1gmiA 136 2.59e+01 b.7.1.1 65309 1sq9A 397 2.60e+01 b.69.4.1 105889 2fwvA 226 2.61e+01 3eyrA 178 2.62e+01 3dczA 207 2.62e+01 3dy0A 336 2.65e+01 1r9cA 139 2.66e+01 d.32.1.2 97255 1v6iA 232 2.72e+01 b.29.1.1 100383 1mqkH 127 2.74e+01 b.1.1.1 85053 2fm8A 135 2.75e+01 d.198.1.1 133767 3dhuA 449 2.76e+01 1vfrA 218 2.77e+01 1vfrA d.90.1.1 40247 1axkA 394 2.78e+01 1axkA b.29.1.2 24181 b.29.1.11 24315 1su8A 636 2.81e+01 e.26.1.2 98999 1xttA 216 2.81e+01 c.61.1.1 122300 2jmkA 111 2.84e+01 2vg0A 227 2.90e+01 3cdzA 754 2.93e+01 3ih8A 456 2.94e+01 3if5A 456 3.01e+01 3hyqA 184 3.05e+01 2w0mA 235 3.07e+01 1u0qA 125 3.11e+01 2bfxA 284 3.12e+01 1r3eA 309 3.13e+01 b.122.1.1 96907 d.265.1.2 96908 1kzfA 230 3.14e+01 d.108.1.3 73354 1ocvA 125 3.17e+01 d.17.4.3 86810 3iavA 530 3.19e+01 1l4iA 206 3.22e+01 b.1.11.1 73564 b.7.2.1 73565 1ju3A 583 3.23e+01 b.18.1.13 67300 c.69.1.21 67301 1tjgH 237 3.26e+01 b.1.1.1 112446 b.1.1.2 112447 3ey8A 133 3.30e+01 3k1lA 381 3.31e+01 3dlcA 219 3.41e+01 1t3tA 1303 3.44e+01 a.5.10.1 106381 c.23.16.1 106382 d.284.1.2 106383 d.79.4.1 106384 d.79.4.1 106385 d.139.1.1 106386 d.139.1.1 106387 1u6mA 199 3.45e+01 d.108.1.1 113069 2a15A 139 3.47e+01 d.17.4.3 125973 2wwkO 109 3.58e+01 2aqpA 164 3.59e+01 1f89A 291 3.62e+01 d.160.1.1 64988 2hjeA 221 3.68e+01 d.110.6.3 147294 3ivkA 224 3.71e+01 1sltA 134 3.73e+01 1c1lA b.29.1.3 24186 3dzvA 273 3.74e+01 2fhfA 1083 3.74e+01 b.1.18.2 147035 b.1.18.2 147036 b.3.1.3 147037 b.71.1.1 147038 c.1.8.1 147039 3fv7A 244 3.76e+01 2p4oA 306 3.77e+01 b.68.6.3 149216 1tmxA 293 3.88e+01 1kjqA 391 3.89e+01 b.84.2.1 72616 c.30.1.1 72617 d.142.1.2 72618 1nkgA 508 3.89e+01 b.3.1.2 103859 b.18.1.25 103860 b.30.5.10 103861 1eyzA 392 3.89e+01 1ez1A b.84.2.1 28246 c.30.1.1 31653 d.142.1.2 41498 1ez1A 392 3.89e+01 1ez1A b.84.2.1 28248 c.30.1.1 31655 d.142.1.2 41500 1xeuA 263 3.90e+01 3brcA 156 3.91e+01 2b59A 187 3.91e+01 b.2.2.2 127879 2hi2A 158 3.92e+01 1kxqE 120 3.93e+01 b.1.1.1 73171 1dvfD 120 3.95e+01 1mfa b.1.1.1 20107 1meoA 209 3.96e+01 c.65.1.1 79035 1gnxA 479 3.96e+01 c.1.8.4 76241 1vrmA 325 3.96e+01 d.96.2.1 120472 2onsA 314 3.97e+01 c.94.1.1 148914 1qyaA 307 3.97e+01 d.21.1.2 104653 d.21.1.2 104654 2r6iA 284 4.00e+01 d.381.1.1 151612