# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2evrA	246	0.000689	b.34.11.3,d.3.1.16	132440,132441
3gt2A	142	0.000704		
2hbwA	235	0.000722		
3h41A	311	0.003034		
3m1uA	434	0.08222		
3ebqA	170	1.971		
2if6A	186	3.503	d.3.1.21	147651
1q46A	175	6.916	a.60.14.1,b.40.4.5	111594,111595
2a19A	175	8.359		
3f1tA	148	10.48		
1am2	199	18.05		
1kl9A	182	22.54	a.60.14.1,b.40.4.5	111574,111575
3ddyA	186	24.97		
1wy0A	342	25.98		
1am2A	199	26.10	b.86.1.2	28381
2hd9A	145	27.86	b.122.1.8	147268
3lyiA	126	27.89		
1yozA	116	28.38	a.253.1.1	123796
3l42A	130	31.45		
1i8dA	213	31.67	b.43.4.3,b.43.4.3	61953,61954
2q4zA	312	35.45		
1hxrA	115	36.00	b.88.1.1	28392
1mi8A	158	36.49	b.86.1.2	91279
1l7lA	121	37.25	b.18.1.16	77790
3a2yA	197	38.00		
1cx4A	305	39.05	b.82.3.2,b.82.3.2	59099,59100
2gc1A	188	45.22	b.82.1.7	134928
1go3E	187	54.69	b.40.4.5,d.230.1.1	83054,83055
3a2zA	197	60.86		
1wmmA	145	61.12	b.122.1.8	121049
1h3zA	109	62.12	b.34.9.2	83471
1fbnA	230	65.73	c.66.1.3	34181
1v8qA	85	68.80	b.84.4.1	108428
2g64A	140	69.27	d.96.1.2	134694
1q8kA	308	74.11	d.58.51.1,a.60.14.1,b.40.4.5	104557,111596,111597
2xdvA	442	81.30		
1kzlA	208	85.54	b.43.4.3,b.43.4.3	77635,77636
3lljA	126	86.67