# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hbwA	235	0.002076		
2evrA	246	0.002352	b.34.11.3,d.3.1.16	132440,132441
3gt2A	142	0.002823		
3h41A	311	0.009062		
3m1uA	434	0.7270		
3ebqA	170	4.867		
2if6A	186	5.662	d.3.1.21	147651
2a19A	175	12.48		
1q46A	175	13.17	a.60.14.1,b.40.4.5	111594,111595
2q4zA	312	20.44		
3a2yA	197	27.58		
1am2	199	30.03		
1kl9A	182	33.60	a.60.14.1,b.40.4.5	111574,111575
2gc1A	188	36.46	b.82.1.7	134928
1l7lA	121	38.41	b.18.1.16	77790
1go3E	187	40.86	b.40.4.5,d.230.1.1	83054,83055
1i8dA	213	41.36	b.43.4.3,b.43.4.3	61953,61954
1mi8A	158	43.98	b.86.1.2	91279
3l42A	130	45.98		
1am2A	199	47.02	b.86.1.2	28381
1fbnA	230	47.20	c.66.1.3	34181
1hxrA	115	54.09	b.88.1.1	28392
2hd9A	145	54.85	b.122.1.8	147268
1q8kA	308	55.85	d.58.51.1,a.60.14.1,b.40.4.5	104557,111596,111597
2ww4A	283	58.07		
3a2zA	197	60.75		
1auk	489	62.64		
1wy0A	342	69.55		
2g64A	140	79.13	d.96.1.2	134694
1h3zA	109	79.58	b.34.9.2	83471
3f1tA	148	80.08		
3ddyA	186	83.44		
1yozA	116	83.53	a.253.1.1	123796
2z0tA	109	86.54		
1hjdA	101	88.87	b.34.2.1	65846